LOC122325065 (gpt2l,LOC107599855,LOC107708598,LOC107691046,LOC107747508)


Basic Information

Item Value
gene id LOC122325065
gene name gpt2l,LOC107599855,LOC107708598,LOC107691046,LOC107747508
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 579773 ~ 594221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219924.1
AGAGCCTTAGTCAACATGGGAGGAGCTGGCGTGCTTTATTCTCAGTTATTGGATCAATGGGAGGAGGTTCGCTGCGAAGGGAAGTTTTACACCGGTCAAAGTTTTGAGCCGCTTCAGACGCTTCACACGGGTCGATCGTTGCCGTCTGTCGTCTCGGTAACCGAGGAAGCTCCCTTTCTTCACTTCTGGAATCTTTCTGCATTCCCGGCGGCCCAAAGCGAACATCTGCACCAGAAGATGACCGAAAACGGAGCGTTACCCCTTCGGGGGAAAGTGCTCACCGTTGACACCATGAACGCCAACGTCAAAAAGGTGGACTACGCGGTTCGCGGACCAATCGTTCAGCGCGCGGTTCAGATCGAGAAGGAGCTGAAAGAGGGGGTAAAGAAGCCTTTTGAAGAGGTCATTAAAGCAAACATCGGAGATGCTCATGCTATGGGCCAACGACCAATCACCTTTTTTCGACAGGTGATGGCATTGTGCACTTATCCACCACTACTTGATGACAACAAGTTTCCAGAAGATGCCAAAAATCGAGCGAGGCGTATTTTGCAATCATGTGGAGGAAACAGCATCGGTGCATACACAACCAGTCAGGGCATTGACTGTGTGAGGCACGATGTTGCCAGCTACATACAGCGCCGTGACGGCGGTATTCCTTCTGATCCTGATAACATCTACCTCACGACGGGAGCCAGTGACGGCATTGTGACCATACTAAAGCTGTTGACTGCTGGGGAGGGTCGTACACGGACGGGGGTCATGATTTCTATTCCTCAGTACCCTCTTTACTCTGCATCTATAGCAGAGCTGGGTGCTGTTCAGATCAATTACTACTTGAATGAGGAGAAGTGCTGGAGTCTGGACATTAGTGAGCTACAGCGCTCTCTACAGACAGCCAGGGAGCATTGCAACCCCCGTGTGCTGTGCATCATCAACCCCGGCAACCCCACTGgTCAGGTACAAAGCAGACAATGTATCGAAGATGTAATCCGATTTGCAGCTAAAGAAAACCTCTTCCTAATGGCTGATGAGGTATATCAGGATAATGTGTATGCAGAGGGCTGTGAGTTTCACTCCTTCAAGAAAGTGCTTTTTGAGATGGGTCCAAAATATTCAAGCAAAGTAGAGCTGGCATCATTTCACTCCACCTCCAAGTGCTACATGGGAGAATGTGGTTTTCGAGGGGGATACATGGAGGTCATCAACATGGACCCAGAGGTGAAGGCTCAGCTCACCAAGCTGGTCTCGGTGCGTCTGTGCCCGCCTGCTCCTGGACAAGCCCTCATGGATCTGGTGGTCAACTCCCCTCAACCTGGAGAACCCTCCTACCAAACCTTTGTGAAGGAAAGAACGGCCGTTCTGAGTGCCTTGGCTGAAAAAGCCAAACTGACCGAGGAGATTCTGAATACAGTGCCAGGCATCAGCTGTAACCCTGTGCAGGGAGCCATGTACTCTTTCCCCCGTATCACCCTACCCGAGCGCGCCATCAACGAAGCAAAGGCGAAGGGTCAGGCTCCAGACATGTTCTACTGCATGAGACTTCTGGAAGAAACCGGCATCTGTCTCGTTCCTGGCAGTGGTTTTGGTCAACGAGAAGGCACTTATCACTTcagGATGACCATCCTTCCTCCGACAGACAAGCTTAAGATCATGCTCAACAAACTGAAGGAATTCCACCAGAAGTTCACCCAGCAGTATTCTTGACTCAGTTCAACTCAACCAATCGCGGCCCTTCTGCCACAACTGACT

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: alanine aminotransferase 2-like

GO:

id name namespace
GO:0006103 2-oxoglutarate metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004021 L-alanine molecular_function

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219924.1 True 1752 mRNA 0.51 13 579773 594221

Neighbor

gene id symbol gene type direction distance location
LOC122325126 c1ql3b,LOC107747511,LOC107599856,LOC107566459,LOC107681760,LOC107691085,LOC107708591,LOC107691073 coding downstream 12973 564663 ~ 566800 (-)
LOC122325042 LOC107708546,LOC107681784,LOC107747514,LOC107691124 coding downstream 64049 468596 ~ 515724 (-)
LOC122325182 NA coding downstream 134200 432668 ~ 445573 (-)
LOC122325049 LOC107566471,LOC107552291,LOC107691105,LOC107681831,LOC107747512 coding downstream 263088 294469 ~ 316685 (-)
LOC122325145 selt1a,selenot,LOC107681817,LOC107708642,LOC106599070 coding downstream 342180 233507 ~ 237593 (-)
LOC122325090 fuz,LOC107708997,LOC107691039 coding upstream 2991 597212 ~ 601234 (-)
gipc2 gipc2,LOC107681828,LOC107690984 coding upstream 74079 668300 ~ 680383 (-)
dnajb4 dnajb4,LOC107681825,LOC107599850,LOC107751861,LOC107690981,LOC107566472,LOC108430719 coding upstream 86454 680675 ~ 685013 (-)
pigk LOC106594017,LOC104946057 coding upstream 248994 843215 ~ 875227 (-)
zzz3 zzz3,LOC107681788,LOC107599843,LOC107703198,LOC107708932,LOC107703238 coding upstream 359495 953716 ~ 973343 (-)
G8273 LOC107681831,LOC107552291,LOC107708861 non-coding downstream 28071 548034 ~ 551702 (-)
LOC122325225 NA non-coding downstream 175951 398126 ~ 403822 (-)
G8257 NA non-coding downstream 210325 291406 ~ 369448 (-)
LOC122325194 NA non-coding downstream 355885 223256 ~ 223888 (-)
G8279 NA non-coding upstream 25531 619752 ~ 635841 (-)
G8280 NA non-coding upstream 26206 620427 ~ 637790 (-)
G8296 NA non-coding upstream 99359 693580 ~ 694370 (-)
G8309 NA non-coding upstream 180038 774259 ~ 776958 (-)
G8375 NA non-coding upstream 404148 998369 ~ 999689 (-)
G8237 LOC107599853,LOC107708895 other downstream 355839 142744 ~ 223934 (-)
dipk2aa dia1a,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108437525,LOC108268022 other upstream 585724 1179945 ~ 1202987 (-)
mfsd8l2 si:ch211-38m6.6,LOC107681768,LOC107656858,LOC107565819,LOC107722537,LOC107599859,LOC108437504,LOC105026921 other upstream 737209 1331430 ~ 1337998 (-)
colgalt2a LOC107593860,LOC107681694,LOC107715500 other upstream 931527 1525748 ~ 1532557 (-)
gng5 NA other upstream 1328074 1922295 ~ 1940721 (-)
slc1a7a slc1a7a,slc1a7,LOC107722044,LOC107671767,LOC107681716,LOC107593788 other upstream 1422187 2016408 ~ 2038705 (-)

Expression


Co-expression Network