LOC122325145 (selt1a,selenot,LOC107681817,LOC107708642,LOC106599070)


Basic Information

Item Value
gene id LOC122325145
gene name selt1a,selenot,LOC107681817,LOC107708642,LOC106599070
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 233507 ~ 237593 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220061.1
CAGTTCACTTAACAATCGTCGTGGGGGAAGATGCGTTTGTTACCTCTCTCGGTGGTAATATTATGGGCCTGTTTTCTTTACAGTGCCTCTGCGGATAACAGCGGCGTAAAGAAAATGAAGGTTCAATTTGCCACGGGTCCACTTCTCAAATTCCAGATTTGtGTCTCCTGAGGATACAAGCGGGTGTTTGAGGAGTACACGCAGGCTTTGTACCAGCGGTACCCAGACATCCGCATAGAAGGAGAAAACTACCTTCCTCTGCCTATCTACAGGCACATTGCTTCCTTTCTGTCTATGTTTAAGCTGTTGTTAATTGGTGTGATCATTGTGGGCAAGGATCCATTTGCTCTATTTGGCATGCAGGCTCCAGGTCTCTGGGTTTGGAGTCAGGAGAATAAGatatatgcCTGTATGATGGTGTTCTTCTTCAGCAATATGATTGAAAATCAGTGTATGTCTACAGGTGCTTTTGAAATCACGCTCAATGatGTTCCAGTCTGGTCTAAGCTGGAGTCAGGCCACCTGCCTTCCATGCAGCAGTTAGTCCAAATTCTGGAGAATGAGATGAAGATGAACGTGCACATGGACACACTTTCACACCATCGCTCATAACCTTGCCTCTGATTCACTGAACGGAGCCGACGACCCCTCCATTTCTGCGGTGAAGCTCTCCTGCGGTTGTAAGGTGACGTTTATGAAGGTTTGCGCTGAAAGTAGAGACTCTACTAGCGCACGCCAGATGTCCTTGCGTTCTCCTCAACGTGCCTCTCGAGATGCATCACCAACAGATGCTGGTGTGGGATCTACGGCAACAACAGTGGCCATATAATTAAGATCGCATCCCATCTCTTGTGCAATAACCATTTGGTTCTGATCACAATGACTccgattttcattttagttcagaTGGCTCAGTCAACAGAATTAACgatggcatatatatatttttccacatCATACTGTATGGCTAACTCTCGGTATACGTTTTATTTAGTAGATGTGAGAAGCTCCTAACTTATACATCCAACCCCCAATCATGATAATTTAACAACTAAGTAACATTATATTTCTGAGCCCTGGATTTTATATTGCTTTGTATAGCttaaaatgtttactaaaagaagaataaaatgtaatactaaA

Function

symbol description
selenot Predicted to enable thioredoxin-disulfide reductase activity. Involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane.

NR:

description
PREDICTED: selenoprotein T1a-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0008430 selenium binding molecular_function

KEGG:

id description
K22366 SELENOT; thioredoxin reductase-like selenoprotein T

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220061.1 True 1143 mRNA 0.43 6 233507 237593

Neighbor

gene id symbol gene type direction distance location
LOC122360735 NA coding downstream 10470 214664 ~ 223037 (-)
LOC122360720 NA coding downstream 28157 204050 ~ 205350 (-)
LOC122360711 NA coding downstream 38149 192500 ~ 195358 (-)
LOC122325049 LOC107566471,LOC107552291,LOC107691105,LOC107681831,LOC107747512 coding upstream 56876 294469 ~ 316685 (-)
LOC122325182 NA coding upstream 195075 432668 ~ 445573 (-)
LOC122325042 LOC107708546,LOC107681784,LOC107747514,LOC107691124 coding upstream 231003 468596 ~ 515724 (-)
LOC122325126 c1ql3b,LOC107747511,LOC107599856,LOC107566459,LOC107681760,LOC107691085,LOC107708591,LOC107691073 coding upstream 327070 564663 ~ 566800 (-)
LOC122325065 gpt2l,LOC107599855,LOC107708598,LOC107691046,LOC107747508 coding upstream 342180 579773 ~ 594221 (-)
LOC122325194 NA non-coding downstream 9619 223256 ~ 223888 (-)
G8257 NA non-coding upstream 53813 291406 ~ 369448 (-)
LOC122325225 NA non-coding upstream 160533 398126 ~ 403822 (-)
G8273 LOC107681831,LOC107552291,LOC107708861 non-coding upstream 310441 548034 ~ 551702 (-)
G8279 NA non-coding upstream 382159 619752 ~ 635841 (-)
G8280 NA non-coding upstream 382834 620427 ~ 637790 (-)
G8237 LOC107599853,LOC107708895 other downstream 9573 142744 ~ 223934 (-)
dipk2aa dia1a,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108437525,LOC108268022 other upstream 942352 1179945 ~ 1202987 (-)
mfsd8l2 si:ch211-38m6.6,LOC107681768,LOC107656858,LOC107565819,LOC107722537,LOC107599859,LOC108437504,LOC105026921 other upstream 1093837 1331430 ~ 1337998 (-)
colgalt2a LOC107593860,LOC107681694,LOC107715500 other upstream 1288155 1525748 ~ 1532557 (-)
gng5 NA other upstream 1684702 1922295 ~ 1940721 (-)
slc1a7a slc1a7a,slc1a7,LOC107722044,LOC107671767,LOC107681716,LOC107593788 other upstream 1778815 2016408 ~ 2038705 (-)

Expression


Co-expression Network