ss18 (ss18,LOC107671692,LOC107671559)


Basic Information

Item Value
gene id ss18
gene name ss18,LOC107671692,LOC107671559
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4288018 ~ 4295033 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220452.1
TCTGATTTCGCGGCTCAGCGCGTTCGTTCTcgctcagtgtgtgtttgtgcgtcgGCTCTAGCGGTGATCTCAATTAACGATTAACGAACATGTCTGTGGCGTTCGCACCGCACCGGCAGCGCGCTAAAGGCGATATAACGCCCGCCGGGATACAGAAGTTGCTGGATGAAAACAACCAGTTGATTCAGTGCATCATGGATTTCCAGAGTAAAGGGAAAACAGCTGAATGTTCACACTACCAACAGATGCTCCACAGAAATCTAGTGTATCTGGCAACAATAGCAGACTCCAATCAGAACATGCAGTCTCTGCTTCCCGCCCCGCCCACTCAGAACATGCCCATGAATCAGAGCGGAGCGACTCCGCAGCTGCCCCACGGTCACAGCATGCCGTCAGACGGGCCGCCCGCTCCACACATGCAGAGCCAGATGAACGGACAGATGCAAGGTCCGACTCACATGTCCATGCAGGGCCCCGGGCCCAACCAGACCCCCAGCATACCCAGCGGCACCATGAACATGCCACCCAGCAGCCACGGCACCATGGGGGCTTATAACCACACAGTGCCCTCCTCGCAGGGAATACAGTCGCAGGGGCAGATAAACATGAGCCAGGGGCAGCCCATGGGCAACTACGGCCCTCGGCCCAGCATTAACATGCAGCCCAATCAGGGGCCTATGATGCACCAGCAGGCTCCTTCCCAGCAGTACAACATGCCCCCTTCTGGTGGCAGCGGGCAGCATTTCCAAGGGCAGCAGAACCCCATGGGCATGATGGGTCAAGGCAATCACGTGATGGGACAGAGGCCCATGCCTCCCTACAGGCCACCGCATCAAGGACCTCCTCAGCAATATCCTGGTCAAGAGGAATACTACACGGAGCAATACAGCCACGGAGGACAGGGGGCGCCGGAGGGAAACGCACAGTATGGTCAGCAGCAAGAGGCGTATCAGCAGGGTCCGCCGCAGCAGCAGGGTTACCCTCCGCAGCAGCAGTACACGGGTCAGCAGGGATACCCTGGACAGCAGCAGGCCTATGGTCCGTCTCAGGGCGCTCCGAGTCAGTATCCGAACTACCCCCAGAGTCAAGGGCAGCAGTATTCAGCCTACAGACCGCCACAGCCTGGACCTCCACAAGGACAGCCGCAGCGCCCCTATGCTTTTGACCAGGGCCAGTATGGCAACTACCAGCAGTAGATGACGAGTGTTAGACTTCCCACCCTAGCATTTCCGGTTTGGAGCTGTGTGTGATCTGATGAAGGGCTACAGCGCTCTCAAAATCTCTATACATCACCTACGAAGAGATGAATCTTCCCTGCTAACGTAGACTGAACTCTTCATTCGGCCACAAGCATTTGAACTAACCGATCAACGATTGGCTCGATTCTCAGCACAGGTGATCTAATTGTGAAACGCCTATAAAACTCATTTGACGAAAAAAGAGAAAGCGTACACATTAAGAATTTCCTGTCAACTCGTACGTGTTAACAGAGAAGCGATTTCACAGCAGCAATGCCTTAAGTGAAACGGCTGCCTTATTTACAGCAACTTACGAAATCagtgaaaatacagaaacacacacagcagtggaacgtgttttgtttttctaataaaattcATTGtgcgttgttgttttttttgtttttgttttgtttttacattttctcctCTCCCTCAAACGTCAGAGAAGCAATAATGCTGAGGTGCGAATGAAGGCTGGTGGAGAGGTGGAAATGGTTTTCAGGTTAAAAACTATGCTatgatgtataaatgtattttatgctttATCAAATAGAGCTCAGATTGAGTCCAGGTGTTGAACAGTAGCTCAAAGTGTCGTCCCGTGTGCTTATTGACTGTATTAAATTTGTTATCTTTCGTTTTTGAAGGTGGGAcgttccattttaaaatgacgtGTATGTCTTGCTGAAATTTGATTAAACCGATCTGGTACTGTA

Function

symbol description
ss18 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in synovial sarcoma. Orthologous to human SS18 (SS18 subunit of BAF chromatin remodeling complex).

NR:

description
protein SSXT isoform X6

GO: NA

KEGG:

id description
K15623 SS18, SSXT, SYT; protein SSXT

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220452.1 True 1957 mRNA 0.51 10 4288018 4295033

Neighbor

gene id symbol gene type direction distance location
rpe65a rpe65a,rpe65,LOC107705134,LOC107708597,LOC107693590,LOC108436856 coding upstream 39017 4243108 ~ 4249001 (+)
gpaa1 gpaa1,LOC107671733,LOC107693589 coding upstream 46942 4232659 ~ 4241076 (+)
si:ch211-188c16.1 LOC107708601,LOC107562847 coding upstream 55664 4224724 ~ 4232354 (+)
LOC122361024 dab1,c8b,LOC107671700,LOC107562846 coding upstream 71010 4179454 ~ 4217008 (+)
prkacbb prkacbb,LOC107600310,LOC107705125,LOC107660409,LOC108411205,LOC103034112,LOC106599750,LOC108267323 coding upstream 116271 4160156 ~ 4171747 (+)
LOC122360677 znf521,LOC107562851,LOC107705137,LOC107708595,LOC107573008 coding downstream 10568 4305601 ~ 4376997 (+)
LOC122323876 LOC107565530 coding downstream 108748 4403781 ~ 4415800 (+)
LOC122323886 LOC107671547,LOC107565518 coding downstream 120891 4415924 ~ 4422167 (+)
LOC122323895 LOC107565531,LOC107708594,LOC107671745,LOC100331149,LOC108436854 coding downstream 128344 4423377 ~ 4432719 (+)
si:ch211-241e1.3 LOC107671555,LOC107705144,LOC107708592,LOC107565521,LOC107671659 coding downstream 245019 4540052 ~ 4549603 (+)
G9356 LOC107600323,LOC107671560,LOC107705133 non-coding upstream 22002 4260768 ~ 4266016 (+)
G9362 NA non-coding upstream 63907 4223591 ~ 4224111 (+)
G9304 NA non-coding upstream 227042 4015450 ~ 4060976 (+)
G9302 LOC107600331,LOC107705102 non-coding upstream 266702 4013106 ~ 4021316 (+)
G9305 NA non-coding upstream 268303 4019339 ~ 4019715 (+)
G9379 NA non-coding downstream 84543 4379576 ~ 4379832 (+)
G9382 LOC107671550,LOC107705116,LOC107671683,LOC107562856,LOC107708586,LOC107565517 non-coding downstream 91894 4386927 ~ 4387444 (+)
G9391 rpb4,polr2d,LOC106612892 non-coding downstream 164060 4459093 ~ 4462842 (+)
G9397 NA non-coding downstream 183276 4478309 ~ 4520645 (+)
G9398 NA non-coding downstream 184444 4479477 ~ 4482624 (+)
G9361 NA other upstream 64906 4222239 ~ 4223112 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other upstream 497679 3756171 ~ 3790339 (+)
G9173 NA other upstream 609084 3676425 ~ 3678934 (+)
G9154 rock1,LOC107671690 other upstream 670975 3615482 ~ 3617043 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 1123195 3123124 ~ 3164823 (+)
G9416 wrnip1 other downstream 268864 4563897 ~ 4570094 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other downstream 277912 4572945 ~ 4589827 (+)
LOC122361055 LOC107565287,LOC107667819 other downstream 603339 4898372 ~ 4899380 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other downstream 614096 4909129 ~ 4911176 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other downstream 1313294 5608327 ~ 5609276 (+)

Expression


Co-expression Network