dvl3a (dvl3a,LOC107681796,LOC107671749,LOC107559372,LOC108430757)


Basic Information

Item Value
gene id dvl3a
gene name dvl3a,LOC107681796,LOC107671749,LOC107559372,LOC108430757
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2620842 ~ 2632556 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220789.1
ACTCGGCGTCAATGAAAGCAATACAAAACCCGCTGCAAGGAGAGCGCAGGGAAGCTCTCCGAGGAGCCGCGGCATTCCTGACCAAAATAAGCTTCTTCATCGCGCGTTTCACGCACTGTCCTCCGCTCCCACACGGCGGGACGCGGCGAAATAAGAGCATGGGTCGCTGATCGCCTTTCGGACCCGTCGGCTCATGGGATATTCGCGCTGATACAGAAGATTCCTGGGAACTCCGGAGGAAGgcgaagaaagaaagagagaacgggattaaccaaaaaaaagtcaactgGCGGGCGAAAGCGAGCAGAAGCCCACTGTGGAGGGGCATCAGGGTCGCCCCTGCGCCGGATGACCGCCGTTCACTTCTCCCCAGCGGTCTGCGATGGGGGAGACCAAAGTTATCTACCACCTCGACGACCAGGAAACTCCATACCTGGTCAAACTGCCCATCCCTGCCGAAAGGGTCACCCTTTTGGACCTGAAAAATGCCCTCAAGAAACCAAACTacaagtttttctttaaatccaTGGACGATGACTTTGGGGTGGTCAAGGAGGAAATCACTGACGACAATGCGAAACTTCCCTGTTACAATGGCCGCGTGATTTGCTGGCTGGTGTCGTCAGACGGCTCCCACTCAGACGGATGCTCGGTGGCGGAGAGTCAGTCCGAGCGACCGCCGTCTCACGAGAGAAGCCAAGGCATTGGAGATTCCAGACCCCCGTCCTTCCATCCAAAGGCTGCAGGCAGCCGGCACGGTGTGGACGATGAAACGGAGACTGATTCGGTCGTGTCGCACAGAAGGGAGAGGGACAGATCGCGCAGGAAACACTCACATGAGCACTCTGGAGGAAGGCAGAATGGCTACTCGCGAGGCGGCAGAGGCATGGATCTGGGAGGTTATGACATCTGTGACAGCCGTTCTTCCCTCATGAGCAGTGAACTGGAATCAAGCAGCTGTTTTGACTCGGATGACGGCTCCACCAGCCGTTTCAGCAGTGTTACAGAGCAAAGCGGCTCGTCCAGGCTGATGAGAAGACACCGCCGGCGGAGACGCAGACCCAAAGCCCAGCAAATGGAGAGGTCTTCATCTTTCAGTAGCATCACTGACTCCACTATGTCACTGAATATCatcactgtcactttaaatatgGAGAAGTATAACTTCCTGGGCATCAGTATCGTGGGTCAGAGCAACGAGCGCGGAGATGGAGGCATCTACATCGGCTCTATAATGAAGGGTGGAGCGGTGGCAGCCGACGGGCGGATCGAGCCGGGTGACATGCTGCTGCAGgtGAATGACATTAACTTCGAGAACATGTGCAACGACGATGCCGTACGAGTGCTGAGGGAGATCGTGCATAAGCCTGGacccGTGTCGCTCACTGTGGCCAAATGCTGGGACCCAAACCCAAACAGTTGCTTTGCTTTGCCGAGGAGCGAGCCCATCCGGCCCATTGACCCTGCAGCCTGGGTGTCCCATACGGCAGCCATGACGGGTGTCTATCCTCCCTACGGCATGAGTCCCTCCATGAGCACGGTCACCTCCACCAGCTCTTCCATCTCCAGCTCCATCCCAGAGACGGAGAGATTTGATGACTACCACCTGTCCGTCCACAGCGACATGGCAACAGTTGCAAAAGCAATGGCCTGTCCAGACTCGGGACTGGAAGTTCGAGACAGAATGTGGCTGAAGATCACTATAGCCAATGCTTTCATAGGCTCTGATGTGGTTGACTGGTTGTTTCATCACGTGGAGGGCTTTGCAGATCGCCGTGAAGCACGAAAGTACGCCAGCAACCTGCTGAAGGCCGGCTTCATCCGCCACACGGTCAACAAAATCACTTTCTCAGAGCAGTGCTACTACATTTTTGGAGATCTTTCTGGCAACATGGCCCATCTCTCTCTGCATGACCATGACGGATCCAGCGGCGCGTCCGATCAGGACACTCTGGCTCCCTTGCTTCACCCCGCTGAAGCTCCCTGGCCGACCGCGTTCCCTTACCAGTACCCGCCGGCCCATTCCCTCCCGGATGCGGCTCACAGCTACTCTGAAGCCGGTGGAGGAAGCGCAGGCAGCCAGCACAGCGAAGGGAGCAGCGGTTCAAACTGCAGCTGGAGCAGGACTGAGGGGAAACCCGCGGCCGGAGACTTCAGGTTAGGAGGAGGAAGCGAAATGGGCGACGCTCATGACTTTGACTTCCGCAGAGACCGAGCCCCCAGCGAGCGCTCGGTGCCGCCCAGCGAGGGCAGCGTGCGCAGCTCCCGATCTCACAGCTACAGCCTGAAACAGGGGTCCGCGCGGGCCGGCCCGGGGTCGCCGTCCGGACGCCATCTTGCCAGCATTCCCCCCGAACTCACGGGCTCCCGGCGCTCGTGCAACACAGCCAACGGGGAGTTCTTCGTCGACATCATGTGACTTGCAAGCAGAAGTGCCCAGAACTGTTTTTTGCCTTacgaattacaaaaaaaaaaaaaaaaacgtggccTACTAGTGCAGCCGATTAGAATTAGGATTAGTGCTGACCTAAAATTCAGTAGCTTGTGAGCCCCCGACATCACTTAGGTCTTAGAAATTAGTCTAATGAAGCATAAGCGAGCAATTCGTGCTTACGATAACAGATCAAGACGTTTTACTAAATGTACTATATCACCTCAAAATAACTGGGACATGTGCTGTTGGAGAAAATGGAAtgatgggagaaaaaaagagcgAGGTTTTGAGAGAAATAGCAATAATTGAATGGGATTTAGTTACTACACTATATGGGTGTGAGGATTCATGGTGAATGTAGTCCAGCCAAGGACATAAATGTCAAATTTCCAAATTTCTGTTGCCCTTGTATTTGGAGGttcttaaccttttttttttgcccttttaAATTTTTACTCTCTGTAAATGTCTCCTGCAGATATTTCATTATTCATGAATCTTGTTTTTACTGAgaatatatttttcagtgtttgtcaGCTATATTGTATTGGGAGAAATTTTTGAAGTACCACGttaaggagatttttttttttttttttaatttataaatatagttttattgtgACCTGCTTGGAGTA

Function

symbol description
dvl3a Predicted to enable frizzled binding activity. Acts upstream of or within canonical Wnt signaling pathway; convergent extension involved in axis elongation; and post-anal tail morphogenesis. Located in cell cortex and spindle. Is expressed in liver. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 3. Orthologous to human DVL3 (dishevelled segment polarity protein 3).

NR:

description
PREDICTED: segment polarity protein dishevelled homolog DVL-3-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0003148 outflow tract septum morphogenesis biological_process
GO:0090103 cochlea morphogenesis biological_process
GO:0023051 regulation of signaling biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0090179 planar cell polarity pathway involved in neural tube closure biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005819 spindle cellular_component
GO:0005938 cell cortex cellular_component
GO:0005109 frizzled binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220789.1 True 3072 mRNA 0.53 15 2620842 2632556

Neighbor

gene id symbol gene type direction distance location
ap2m1a ap2m1a,ap2m1b,ap2m1,LOC107671693,LOC107593770,LOC107709357,LOC107602122 coding upstream 13986 2598768 ~ 2606856 (+)
abi1b abi1b,LOC107671751,LOC107559371,LOC107681778 coding upstream 39577 2563177 ~ 2581265 (+)
imp3 imp3,LOC107671714,LOC107681808 coding upstream 76279 2541915 ~ 2544563 (+)
LOC122360938 LOC107593781,LOC107719259,LOC107709351,LOC107671695,LOC107559342 coding upstream 110832 2495943 ~ 2510010 (+)
LOC122360901 NA coding upstream 159620 2453850 ~ 2461222 (+)
LOC122328513 LOC107727546,LOC107671763,LOC107559376,LOC107709337 coding downstream 12439 2644995 ~ 2657785 (+)
ahsg2 LOC107727545,LOC107681805,LOC107577584,LOC107559377 coding downstream 25847 2658403 ~ 2661029 (+)
LOC122323799 LOC107681838,LOC107709342,LOC107593839,LOC108430687,LOC103043726,LOC105899208 coding downstream 62865 2695421 ~ 2701972 (+)
vps4b vps4b,LOC107710065,LOC107681797,LOC107727524,LOC107671729 coding downstream 85017 2717573 ~ 2729493 (+)
bcl2b bcl2b,LOC107727540,LOC107593762,LOC107671740,LOC107711715,LOC107559382 coding downstream 110159 2742715 ~ 2780678 (+)
G8764 NA non-coding upstream 7738 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 11323 2511622 ~ 2609519 (+)
G8737 NA non-coding upstream 175642 2443588 ~ 2445200 (+)
G8716 NA non-coding upstream 299655 2288286 ~ 2321187 (+)
G8717 NA non-coding upstream 330802 2288825 ~ 2290040 (+)
G8794 NA non-coding downstream 186516 2819072 ~ 2872749 (+)
G8816 NA non-coding downstream 279735 2912291 ~ 2912787 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding downstream 484292 3116848 ~ 3121053 (+)
G9130 ipp non-coding downstream 890714 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 931152 3563708 ~ 3564239 (+)
LOC122329004 NA other upstream 2393 2618316 ~ 2618449 (+)
LOC122328998 NA other upstream 2708 2618002 ~ 2618134 (+)
G8760 NA other upstream 28084 2591634 ~ 2592758 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other upstream 65521 2548066 ~ 2555321 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other upstream 200887 2406742 ~ 2419955 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other downstream 2685 2635241 ~ 2636586 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other downstream 42814 2675370 ~ 2689627 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other downstream 97080 2729636 ~ 2739907 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other downstream 490568 3123124 ~ 3164823 (+)
G9154 rock1,LOC107671690 other downstream 982926 3615482 ~ 3617043 (+)

Expression


Co-expression Network