rpap2 (rpap2,LOC107716948,LOC107716950)


Basic Information

Item Value
gene id rpap2
gene name rpap2,LOC107716948,LOC107716950
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 7176935 ~ 7185014 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043221692.1
GTCGCTGGCCGCTTGCCGTAGTGCTGTGACGTAGGCGGAAGGAGTTTTGTTTTGAGAAGACGAGCATGGAAACGACCGGAAAGATTCAAGCCtcaaaatcaaaaaagaaagGTGGTAAAGGAACCAAGGTGATTTCAGCAGCGGATGAGGCGAGAAAGAGGGAAGCTATTAAAGAGGCGCTTAGAAAGAAACTAGAGTTGGAGCGCAAAGCCCTGCAGGTGGTTGAGCGACTGCTGGAGGACAGCGTGACAGAGGAGTTTCTCATTGACTGTGCGTGGCACATCACTCCTGCCAACTACAAAGATACAGTGGAAGAACGGTCCATTGCTAAACAGTGTGGATATCCTAGGTGTCCAAATAAACTAACAAATgtACCCACTCAGCAGTTTAAAATATCCACCAAAACTAACAGAGTCTATGACATTACAGAGCGCAAGtgtttttgcagTAATTTCTGCTACAAAGCCTCCAAATGTTTTGAGCTCCAGCTCTCAAAAACTCCACTTTGGCTCAGAAAGGAGGAGGGaccacCTGAAGTTAAGCTGATGAAAGAAGGAGAGGGAGGCAGCTCTGGACAGGAAATAAAGCTGGTAGACAGGCCTGTGACAGAAGCTGACATTGAAAATCCTGTCCCAGACGTTCCTGAATCTCACAATGACTCCCCTCCTCACAACCCGAGCGACCACAGTGACATTGAGCAAGACTTTGTCTCCAGTGTGGTGTCCAAACAGCATAAACACGTGAGGGTACACTGGGGAAAACTGCCAAAGAGGGACGAAGTCAGTGAGGAAAGGtcaaatactgaaaataagCAACATCCAGAACCTACAGGAACACTAGATGGAGAAAACAATGATGAAAATAGATCTTCAATAACCCCTCAACCACAGATGGACCCAACTGCCAATCTGTCTATACCAAATAAAACCACATCTGCTGTATCTGATGTTGAAGGAACTCTGGATCTTTTGAATCAGTGTAGCCTAAAGGACATTGCAATCGACCAGGAAACCAACCTTTCTTCACAGCCTGAGATTGGAAACTCCACCCCTCCCGCTAGTGGTCTGCACATCACTCAGGTGAGCATGAGTAAGAGAGGAGCTGCCAGCCTCAAAGGCTTGTTGAAGGACCATAACAAAGCTAAAACAACTACATCCATCAGTGTGTGCCTTCTAGAGCATCTAAAGCAAACGTTTATAGAGTGGAGAACTGAGGAAACCACAAAGTTTCTTTATGGGCCTGATTATGCCTCTGGTACAGAGGTTTCTGCACAGGAAGTGGAGGAACTGGATGAAGATGACCTGGATGAGGCTGAGGTGGAAATGAGCTTAGACAGAACAGTGGATGTTCTTCCGGACCCCTGTGCTTCAGCTCCTGATTTTCAAACTCTGCGGAAGGAGACCGAGTTGCTGGAGCTGAGAGTGAGAGAGTTTTATAATGGAGTATATGTTCTGCCTGAAGATGTCAAGGCAGATGCTATCAAAGACATTCAAGACAAACAGGACAGTGGGAAGGACCCTCCTCTACCTTTGGTTGATTCTCATGCGCAGCATCTGATTCAGAAACGCATTGCTGTGGAGAAGCTCAGCCAGAGcTTGAGAGATGTTGTGGGACCTCTGCATCTAACGATGAATGATGTAATCAATGACATAAATAATCTGGTCAGGACATTCAGGTTTACAAGCGTTAATATCATTCACAAAAGGCCAGAATGGACTTTAATTGCTGTGGTTCTTCTGTCAGTATTAACAGAAGTGTCACCGTTGCTCAGAGAGTCATTGGCAAGTCCATCTTCATTGGAGTACATCTCCTCTCTCATGAGAGAGCTGAAACTGGAGGACAAAGATCTACACAACCTCGTGCTGCTCTTCAAACCGTGTTTTACTTCACAAACATAATGTACCACATGCACATTTAGAGTTTATATTAAAAGTGAAACAATGA

Function

symbol description
rpap2 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain and snRNA transcription. Predicted to be located in cytoplasm and nucleus. Predicted to be part of RNA polymerase II, holoenzyme. Orthologous to human RPAP2 (RNA polymerase II associated protein 2).

NR:

description
putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X1

GO: NA

KEGG:

id description
K20827 RPAP2; RNA polymerase II-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043221692.1 True 1944 mRNA 0.45 13 7176935 7185014

Neighbor

gene id symbol gene type direction distance location
cdc7 cdc7,LOC107579524 coding upstream 6820 7164705 ~ 7170115 (+)
cdcp2 cdcp2 coding upstream 15743 7157934 ~ 7161192 (+)
ssbp3a ssbp3,ssbp3a coding upstream 25164 7126271 ~ 7151771 (+)
fam151a fam151a coding upstream 65663 7106211 ~ 7111272 (+)
cryz cryz,LOC107553670 coding upstream 78759 7084134 ~ 7098176 (+)
rpl5a rpl5,LOC107568084,LOC107694375,LOC107743362,LOC107716952,LOC103368809 coding downstream 18287 7203301 ~ 7206402 (+)
mtf2 mtf2,LOC107743365,LOC107568093 coding downstream 40076 7225090 ~ 7236113 (+)
ccdc18 ccdc18,LOC107716953,LOC107658134,LOC107568077 coding downstream 51925 7236939 ~ 7254571 (+)
scinlb LOC107588891,LOC107700536,LOC107658127,LOC107568091,LOC107743367,LOC108280481,LOC106568976 coding downstream 72150 7257164 ~ 7268405 (+)
wls wls,LOC107684934 coding downstream 84701 7269715 ~ 7283810 (+)
G9940 NA non-coding upstream 125941 7050725 ~ 7050994 (+)
LOC122325829 NA non-coding upstream 133847 7042831 ~ 7043088 (+)
LOC122324999 NA non-coding upstream 140437 7036056 ~ 7036498 (+)
G9930 NA non-coding upstream 166341 7009360 ~ 7010594 (+)
G9928 NA non-coding upstream 175456 7001060 ~ 7001479 (+)
G10012 NA non-coding downstream 4641 7189655 ~ 7196400 (+)
G10013 NA non-coding downstream 12076 7197090 ~ 7199537 (+)
G10020 fam69a,fam69aa,LOC107716951,LOC107568082,LOC107694372,LOC108436064 non-coding downstream 21493 7206507 ~ 7209934 (+)
G10021 NA non-coding downstream 25724 7210738 ~ 7210938 (+)
G10094 NA non-coding downstream 235428 7420442 ~ 7421878 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 71143 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 189816 6986298 ~ 6987119 (+)
G9889 NA other upstream 484560 6691668 ~ 6692375 (+)
G9887 NA other upstream 486156 6690372 ~ 6690779 (+)
sst2 LOC107549725,LOC107710806 other upstream 808981 6367177 ~ 6367954 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other downstream 100656 7285670 ~ 7300101 (+)
G10108 NA other downstream 319608 7504622 ~ 7582385 (+)
G10212 NA other downstream 921851 8106865 ~ 8107777 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 1977597 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 2561556 9746570 ~ 9751212 (+)

Expression


Co-expression Network