sft2d3 (sft2d3,LOC107705299,LOC107653510,LOC107737414)


Basic Information

Item Value
gene id sft2d3
gene name sft2d3,LOC107705299,LOC107653510,LOC107737414
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 5807171 ~ 5808548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223424.1
tttagtacACGAGCTATTTCccataaaaggtgtttattcTCCacctgtaaataataaatacattattgattcaaaagtttacattatTTGTGATTATGGATTGTAGTAGCGCACGCCTCGACTTCTGTGATCAACACAAACAACTTTCACAAACCATGTAGGAAAAGGACACGCCGTTTTAAAGTGTGTAAAGTCAcacaaaccattttttaaattaaccatattaaacaaaaaatagtcTCTTCATTCTTCCTCCTAGAGATCGAAGTCTCTTATTCCTTTGAACTTTTCACATATTCCAGTCATGGAAAGTAGTTTTAAATTAAGTatcttttaaatacagaaaaataaggGGTCATTGTACCACGTGGGCGTATATCCGTCGCATACAGCAACGTCACAGTAAATCGTTGTCATCGCAATGCCACAACTTCCTGTTTGCGATCCACACATTAAATAATGGCTGAATTAAACAGACAGCTCCAGGAATATTTGGCTCAATCTAAAAGCGGCGCAAAGACGATATCACAGTCCAGTTCCAGCACTGCAATAGACATCGATGAATCCACCTCGGTGCCGGGGAGCTGGTTCGGCAGGTGGTCGAGTCCGTTCTCTGGATCCAGCAGCCGTGGACCGTCATCAGGCCAAGGATCGAGCAGCGGCTTCTCGTGGCCGTGGTCATCAGAGCCTGACCCGTGTTTGCCGGGCATGAGTCGTTCCCAGCGGCTGATCGCGTTCGGAACGTGTATTTTCTTCTCTGCTCTGTGCTTTGGACTGTCGGCGCTTTACGCTCCTTTACTCTTACTGAAAGCGCGTAAGTTCGCTCTGCTGTGGTCGCTCGGATCCGTGTTCGCTCTCCTCGGGGCGGCGATCCTCCGCGGACCCAGTAAACTCATTGCGACTCCTACACCGGGAGCCGCGGTGTACCTGTGCTCTCTGGTGGGCACTCTGTATGCGGCGCTGAACCTTCACAGCACGCTGCTCACAGCGCTTGGAGCCTGTTTTCAGATCGCTGCTATTGTCGGTTACATCGTGGCTTTGTTGCCGGGTGGGAGTGCTGGGATGAGGTTCGTCGGTGGCATGGCAGCGTCCGCTATTAAAAGAACTGTGACTGGTAAAGCCATGCCTATATAATAAGGCATTTCACGCACTGGGACTTTTGTAAATCACGGAAGATACTCTGTTTTCGCACATTTTTTGAGTGACTGGTCTGGAGTTCAGCGTAAACCGCATTCTGTGGATGGGGACATCTAAATGTGTTGTGACTTCCACTGTGACAGGGACCATACCTATGACCAAGACATCAAATACTACTTAccttttaatgtttctgaactGTTCTTGATAGTtaactttttgtaaataaacttaaacatta

Function

symbol description
sft2d3 Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human SFT2D3 (SFT2 domain containing 3).

NR:

description
vesicle transport protein SFT2C

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223424.1 True 1378 mRNA 0.46 1 5807171 5808548

Neighbor

gene id symbol gene type direction distance location
si:ch1073-184j22.1 si:ch1073-184j22.1,LOC107564249,LOC107653514,LOC107705312,LOC107660327,LOC107550431,LOC107724751,LOC108440865 coding upstream 6300 5794226 ~ 5800871 (+)
gnb4a LOC107705311,LOC107653516,LOC107564248,LOC108440866,LOC107724752,LOC107660315,LOC103030165,LOC107550449 coding upstream 27578 5765068 ~ 5779593 (+)
pex5lb pex5lb,LOC107564246,LOC107653517,LOC107660316,LOC107550448,LOC107724753 coding upstream 43312 5730605 ~ 5763859 (+)
foxf2a LOC107671725,LOC107745889,LOC107563086,LOC107685282,LOC107724048 coding upstream 915410 4888123 ~ 4891761 (+)
LOC122328338 foxq1,LOC107685281,LOC107745888,LOC107563088,LOC107671726,LOC107724052 coding upstream 921206 4884610 ~ 4885965 (+)
LOC122361161 NA coding downstream 28100 5836648 ~ 5838633 (+)
trnag-gcc_1 NA coding downstream 161102 5969650 ~ 5969724 (+)
trnag-gcc_2 NA coding downstream 162971 5971519 ~ 5971593 (+)
trnag-gcc_3 NA coding downstream 166167 5974715 ~ 5974786 (+)
trnag-gcc_4 NA coding downstream 169367 5977915 ~ 5977989 (+)
G9671 NA non-coding upstream 82155 5724701 ~ 5725016 (+)
G9663 NA non-coding upstream 89765 5717178 ~ 5717406 (+)
G9660 NA non-coding upstream 101286 5702617 ~ 5705885 (+)
LOC122357632 NA non-coding upstream 199746 5604474 ~ 5607425 (+)
G9632 tfr1a,LOC107705306,LOC107653522,LOC107564243,LOC107728405 non-coding upstream 215584 5577466 ~ 5591587 (+)
G9690 NA non-coding downstream 23809 5832357 ~ 5832690 (+)
G9692 cldn15la,LOC107737418,LOC107550432,LOC107695160 non-coding downstream 43721 5852269 ~ 5859952 (+)
G9697 NA non-coding downstream 333494 6142042 ~ 6142865 (+)
G9758 NA non-coding downstream 567595 6376143 ~ 6376597 (+)
G9825 NA non-coding downstream 693842 6502390 ~ 6502594 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other upstream 197895 5608327 ~ 5609276 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other upstream 895995 4909129 ~ 4911176 (+)
LOC122361055 LOC107565287,LOC107667819 other upstream 907791 4898372 ~ 4899380 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other upstream 1217344 4572945 ~ 4589827 (+)
G9416 wrnip1 other upstream 1237077 4563897 ~ 4570094 (+)
dusp28 dusp28,LOC107737412,LOC107695162,LOC107653509,LOC107705300,LOC107564257 other downstream 15445 5823993 ~ 5826286 (+)
trnag-gcc_20 NA other downstream 411878 6220426 ~ 6220500 (+)
trnag-gcc_21 NA other downstream 413897 6222445 ~ 6222519 (+)
sst2 LOC107549725,LOC107710806 other downstream 558629 6367177 ~ 6367954 (+)
G9887 NA other downstream 881824 6690372 ~ 6690779 (+)

Expression


Co-expression Network