foxf2a (LOC107671725,LOC107745889,LOC107563086,LOC107685282,LOC107724048)


Basic Information

Item Value
gene id foxf2a
gene name LOC107671725,LOC107745889,LOC107563086,LOC107685282,LOC107724048
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4888123 ~ 4891761 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223961.1
GGGGATGATAGGGGTCCGGGACGGTAAACCGACACTGCGCTGTGTGTGGTATCCGAGCCCTGGCGCAGCGGCTGATGGAAAAAGCCTGCTTCCACTCATGTCAAAATCATTTATCCAGAACAGCCCTTTACAAGAACTTGTATACACTCGGAGACGGGCTTTTTTTTCTCGCCCACCCCCATCACGCGCGCTCGACGAGATGCGCGCGCGGGTCACCGCCTTACGGGCTCGCGCTCTTCGCTCTTAGGCGAGGAGATGGACTCGTTCCCTCGACGGCCGAGCGCGCCATTACACCGTGCCACTCACTAGAAGTGCTTTTCAGCTTCGACCTCCCGTCCTCCAGCGCCAGAACTCTCACCAAAGCACGCCATTAATTACTGGAGCCCTGACAGCCTTCGCCCCGGTGTTTGGCGTGTGGCGCTGTTGATTGAAACGTCGGACTAGGCTTGATAAATGGCGTTATTGCGTGTATTTAGGCTGTCAGAGGGGAGGTGGGGAGTCTCTCTGCTCGGACTCTGCACAGCCTCCTGCCAGACCGATAGCTGGAGGCATGCCAGACATGGAAAAGGGGTGGGTCTCCGCAGTTTGAGGAGATTTCTTGGAGGAATTTAGCGGGGATCTAGGGGCAGAGAGAGATTTACGAATTGATAGGTGGTCGCGTTTTGTTTGGCCGCACGTCTTTGCGCCAGAGGACTCTGGAGCATTGAGTTTCCTTCTCTTAAAGGATTAGTCTTCGCGATGGCCACCAAGAGACTAAGGAGGGGTCGCTATCCTGGCGACACACAGCTGGTGGCTTCAACCGGGAGCACAATTGTGGCGCACTGACCTCGGACAGACGCTGGCTTTTAGCAGAGATTTGCTCGGAGTACGCGCGGTTTCCTCCCGTATTTTTAGCCCCAGACTCTTACTCCCTGAAGACCGAACCCGTCTTTTAACGTCCGTCCAGCTTCCTCCGCGATGACGACCGAGAGCTCCCAGCAGCCGCTGGACACGCCGGCTCCCATCAGGTCCAGCCCCGCGTCCAGCGCCATGCACTCGGCGCTTCAGAGCACGCAGACGGCGCTGGAGAGCACGGCCGCCACCGGCAGCAAGGGCAAGAAGTCCAACTCGGGCATGAGGCGCCCCGAAAAGCCCCCGTACTCGTACATCGCCCTCATAGTCATGGCGATACAGAGCTCTCCGACCAAAAGGTTAACGCTGAGCGAGATCTATCAGTTCCTCCAGGCGCGCTTCCCGTTTTTTCGGGGCTCCTACCAGGGCTGGAAAAACTCGGTCAGACACAATTTGTCTCTTAACGAGTGCTTCATCAAGCTCCCCAAAGGCCTCGGGCGGCCGGGGAAAGGCCACTACTGGACCATCGACCCCGGCAGCGAGTTCATGTTCGAGGAGGGCTCCTTCCGACGCAGGCCCCGGGGTTTCCGAAGGAAATGCCAGGCGCTCAAACCCATGTACCGCATGATGAACGGCATCGGCTTCGGCGCCTCCATGCTGCCCCAGAACTTCGACTTCCAGTCGCCCTCCGCGTCCCTGGCCTGCCACGCCAACGGCTACAACCTGGACATGATGAGCAACCCGGTGCCCGGCGTCCACGCGGGATACGACAGCCTCGGCACGGGCCACCACGTCTCCCACATGTCGCCCAGCTCGGGCTCCACGTACATGACGGCGTGCCAGGTCGCTTCCAACGGCGAGTACGGCCCGGAAAACAGCAACAGCCCGCTGCACTCTCCCCCGAGCGGCATGAGCGGCTCCCTGGAGTGCCACTCTCCGTACGGGGCCGCCTCGGCGCACTGGGCTTCTTCAGGCGTGTCTCCTTACATTAAACAGCAGCCGCTGGCCTCCAGCAGCCCGAACTCCTCTGGACTACACTCGAGCATGCCTCCTTACTCTCTGGAGCAGGGCTACCTGCATCACAACGGCAGAGAATCGGCGGACATCTCAGCAGGAATGTCTCGATACCAGAGCCACTCATCGCCGGTCTGCGACAGAAAAGACTTTGTGCTGAACTTCAACGGCATCACGTCGTTTCACCCGTCCGGCAGCGGGTCCTACTACCaccaccagctccatcaccaaggaGTCTGCCAAGACGTGAAGCCCTGCGTGATGTAACCGAACTCTGAGcggccaaaataaaaataatacacccGAGAGTACGGAGCGAACTCTGAAGTCCCGAAGAACGCGTGAAACGAGCGGAAGTCGATCTGAGAAActacgaagaagaagaagaagaagaagaagaagaagaagaagaagaagtcgAGTGACCGCAGCAGAGGAAAGCGTTCGGGCTTCTgcttcttttcttgtttttgttttctttggaaaGATTATGACGTATATTTACtatctgggaaaaaaaaaaaaacctcgaAATGTCCGCGACGTTGTTTTAATCCAAGCCGTTTATCGAGTCCGCGAGCGTTTGGTTCGAGCGCGTttccaaagagagagagaggatacTACGGGAAAGCGCTCAGAAGCCGAGGATCAGGACACAGCCCGTGCATGTCGATCAAAGAAGTATCTCGTTTGTCTAaaccttctgtgtgtgtgtttctgacgGCTCTTATATCTTCAGGGGTCAATGGGGCCTACGAAAACCGTATTAGAATAATAATGATTGCACTTTTGTTAGTTTAAAAAGTTGACAAATTACAGTTATGTACAGTACAATAAAACTATgtattctcaaaaaaaaaa
>XM_043223968.1
ATGATAGGGGTCCGGGACGGTAAACCGACACTGCGCTGTGTGTGGTATCCGAGCCCTGGCGCAGCGGCTGATGGAAAAAGCCTGCTTCCACTCATGTCAAAATCATTTATCCAGAACAGCCCTTTACAAGAACTTGTATACACTCGGAGACGGGCTTTTTTTTCTCGCCCACCCCCATCACGCGCGCTCGACGAGATGCGCGCGCGGGTCACCGCCTTACGGGCTCGCGCTCTTCGCTCTTAGGCGAGGAGATGGACTCGTTCCCTCGACGGCCGAGCGCGCCATTACACCGTGCCACTCACTAGAAGTGCTTTTCAGCTTCGACCTCCCGTCCTCCAGCGCCAGAACTCTCACCAAAGCACGCCATTAATTACTGGAGCCCTGACAGCCTTCGCCCCGGTGTTTGGCGTGTGGCGCTGTTGATTGAAACGTCGGACTAGGCTTGATAAATGGCGTTATTGCGTGTATTTAGGCTGTCAGAGGGGAGGTGGGGAGTCTCTCTGCTCGGACTCTGCACAGCCTCCTGCCAGACCGATAGCTGGAGGCATGCCAGACATGGAAAAGGGGTGGGTCTCCGCAGTTTGAGGAGATTTCTTGGAGGAATTTAGCGGGGATCTAGGGGCAGAGAGAGATTTACGAATTGATAGGTGGTCGCGTTTTGTTTGGCCGCACGTCTTTGCGCCAGAGGACTCTGGAGCATTGAGTTTCCTTCTCTTAAAGGATTAGTCTTCGCGATGGCCACCAAGAGACTAAGGAGGGGTCGCTATCCTGGCGACACACAGCTGGTGGCTTCAACCGGGAGCACAATTGTGGCGCACTGACCTCGGACAGACGCTGGCTTTTAGCAGAGATTTGCTCGGAGTACGCGCGGTTTCCTCCCGTATTTTTAGCCCCAGACTCTTACTCCCTGAAGACCGAACCCGTCTTTTAACGTCCGTCCAGCTTCCTCCGCGATGACGACCGAGAGCTCCCAGCAGCCGCTGGACACGCCGGCTCCCATCAGGTCCAGCCCCGCGTCCAGCGCCATGCACTCGGCGCTTCAGAGCACGCAGACGGCGCTGGAGAGCACGGCCGCCACCGGCAGCAAGGGCAAGAAGTCCAACTCGGGCATGAGGCGCCCCGAAAAGCCCCCGTACTCGTACATCGCCCTCATAGTCATGGCGATACAGAGCTCTCCGACCAAAAGGTTAACGCTGAGCGAGATCTATCAGTTCCTCCAGGCGCGCTTCCCGTTTTTTCGGGGCTCCTACCAGGGCTGGAAAAACTCGGTCAGACACAATTTGTCTCTTAACGAGTGCTTCATCAAGCTCCCCAAAGGCCTCGGGCGGCCGGGGAAAGGCCACTACTGGACCATCGACCCCGGCAGCGAGTTCATGTTCGAGGAGGGCTCCTTCCGACGCAGGCCCCGGGGTTTCCGAAGGAAATGCCAGGCGCTCAAACCCATGTACCGCATGATGAACGGCATCGGCTTCGGCGCCTCCATGCTGCCCCAGAACTTCGACTTCCAGTCGCCCTCCGCGTCCCTGGCCTGCCACGCCAACGGCTACAACCTGGACATGATGAGCAACCCGGTGCCCGGCGTCCACGCGGGATACGACAGCCTCGGCACGGGCCACCACGTCTCCCACATGTCGCCCAGCTCGGGCTCCACGTACATGACGGCGTGCCAGGTCGCTTCCAACGGCGAGTACGGCCCGGAAAACAGCAACAGCCCGCTGCACTCTCCCCCGAGCGGCATGAGCGGCTCCCTGGAGTGCCACTCTCCGTACGGGGCCGCCTCGGCGCACTGGGCTTCTTCAGGCGTGTCTCCTTACATTAAACAGCAGCCGCTGGCCTCCAGCAGCCCGAACTCCTCTGGACTACACTCGAGCATGCCTCCTTACTCTCTGGAGCAGGGCTACCTGCATCACAACGGCAGAGAATCGGCGGACATCTCAGGAATGTCTCGATACCAGAGCCACTCATCGCCGGTCTGCGACAGAAAAGACTTTGTGCTGAACTTCAACGGCATCACGTCGTTTCACCCGTCCGGCAGCGGGTCCTACTACCaccaccagctccatcaccaaggaGTCTGCCAAGACGTGAAGCCCTGCGTGATGTAACCGAACTCTGAGcggccaaaataaaaataatacacccGAGAGTACGGAGCGAACTCTGAAGTCCCGAAGAACGCGTGAAACGAGCGGAAGTCGATCTGAGAAActacgaagaagaagaagaagaagaagaagaagaagaagaagaagaagtcgAGTGACCGCAGCAGAGGAAAGCGTTCGGGCTTCTgcttcttttcttgtttttgttttctttggaaaGATTATGACGTATATTTACtatctgggaaaaaaaaaaaaacctcgaAATGTCCGCGACGTTGTTTTAATCCAAGCCGTTTATCGAGTCCGCGAGCGTTTGGTTCGAGCGCGTttccaaagagagagagaggatacTACGGGAAAGCGCTCAGAAGCCGAGGATCAGGACACAGCCCGTGCATGTCGATCAAAGAAGTATCTCGTTTGTCTAaaccttctgtgtgtgtgtttctgacgGCTCTTATATCTTCAGGGGTCAATGGGGCCTACGAAAACCGTATTAGAATAATAATGATTGCACTTTTGTTAGTTTAAAAAGTTGACAAATTACAGTTATGTACAGTACAATAAAACTATgtattctcaaaaaaaaaa

Function

NR:

description
forkhead box protein F2-like

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007389 pattern specification process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09399 FOXF; forkhead box protein F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223961.1 True 2706 mRNA 0.56 2 4888123 4891761
XM_043223968.1 False 2699 mRNA 0.56 2 4888127 4891761

Neighbor

gene id symbol gene type direction distance location
LOC122328338 foxq1,LOC107685281,LOC107745888,LOC107563088,LOC107671726,LOC107724052 coding upstream 2158 4884610 ~ 4885965 (+)
si:ch211-241e1.3 LOC107671555,LOC107705144,LOC107708592,LOC107565521,LOC107671659 coding upstream 338520 4540052 ~ 4549603 (+)
LOC122323895 LOC107565531,LOC107708594,LOC107671745,LOC100331149,LOC108436854 coding upstream 455404 4423377 ~ 4432719 (+)
LOC122323886 LOC107671547,LOC107565518 coding upstream 465956 4415924 ~ 4422167 (+)
LOC122323876 LOC107565530 coding upstream 472323 4403781 ~ 4415800 (+)
pex5lb pex5lb,LOC107564246,LOC107653517,LOC107660316,LOC107550448,LOC107724753 coding downstream 838844 5730605 ~ 5763859 (+)
gnb4a LOC107705311,LOC107653516,LOC107564248,LOC108440866,LOC107724752,LOC107660315,LOC103030165,LOC107550449 coding downstream 873307 5765068 ~ 5779593 (+)
si:ch1073-184j22.1 si:ch1073-184j22.1,LOC107564249,LOC107653514,LOC107705312,LOC107660327,LOC107550431,LOC107724751,LOC108440865 coding downstream 902465 5794226 ~ 5800871 (+)
sft2d3 sft2d3,LOC107705299,LOC107653510,LOC107737414 coding downstream 915410 5807171 ~ 5808548 (+)
LOC122361161 NA coding downstream 944887 5836648 ~ 5838633 (+)
G9550 NA non-coding upstream 100754 4787046 ~ 4787369 (+)
G9536 NA non-coding upstream 233953 4653956 ~ 4654170 (+)
G9516 NA non-coding upstream 260953 4624762 ~ 4627170 (+)
G9397 NA non-coding upstream 367478 4478309 ~ 4520645 (+)
G9568 NA non-coding downstream 21234 4912995 ~ 4913362 (+)
G9596 crhr2,LOC107660401,LOC107593817,LOC107671670,LOC100335005 non-coding downstream 183088 5074849 ~ 5111570 (+)
G9613 NA non-coding downstream 551773 5443534 ~ 5537567 (+)
G9632 tfr1a,LOC107705306,LOC107653522,LOC107564243,LOC107728405 non-coding downstream 685705 5577466 ~ 5591587 (+)
LOC122357632 NA non-coding downstream 712713 5604474 ~ 5607425 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other upstream 298296 4572945 ~ 4589827 (+)
G9416 wrnip1 other upstream 318029 4563897 ~ 4570094 (+)
G9361 NA other upstream 665011 4222239 ~ 4223112 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other upstream 1097784 3756171 ~ 3790339 (+)
G9173 NA other upstream 1209189 3676425 ~ 3678934 (+)
LOC122361055 LOC107565287,LOC107667819 other downstream 6611 4898372 ~ 4899380 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other downstream 17368 4909129 ~ 4911176 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other downstream 716566 5608327 ~ 5609276 (+)
dusp28 dusp28,LOC107737412,LOC107695162,LOC107653509,LOC107705300,LOC107564257 other downstream 932232 5823993 ~ 5826286 (+)
trnag-gcc_20 NA other downstream 1328665 6220426 ~ 6220500 (+)

Expression


Co-expression Network