gpaa1 (gpaa1,LOC107671733,LOC107693589)


Basic Information

Item Value
gene id gpaa1
gene name gpaa1,LOC107671733,LOC107693589
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4232659 ~ 4241076 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224133.1
CAGGAAGTTGGTCCGCACCGTATTACTTCCGGATGGAACACGGAACAGCACTGTGAACGATTGTACAGCAGCGGCAgatcaaactgtattttaacgTTTCCTATCTTAAAGAGATGCAGAGCTAGCGTCTCCATTCGCGTCAGTTCCGCTGCAACCTTCTGATTCTGCAGGTCTGTTGAAGCAGAGCGCCAGGTCATCATCATGGGTCTGTTGTCTGACCCGAATCGCAGAAAAGCCCTGACCAGCCTCCTGACCCGCCTCAACACACCCATATGCGTTGTGTGCTACCTGGCGGGAATAGTGTGGTTCATGGGTCTGGCGTTCGAGCCCTTCACTCTGCGCACGTACATGTCGGAGAACGCCATGGGCTCTACCATGGTGGAGGAGCGCTTCTCGTCTGGGGAGCGAGCGCTGGGCCTCGCCAAGGAGTTCGACGCTCACAAAAGAAAGGCGGGGGGGATGCCGGTGGAGTGGTTGGTTAAGAGCATGCAGGCCAGAGGACTGGAGGTGTTCACTCAGAGCTTCTCCCGCAAGCTGCCCTTCCCTGACGAGAACAAAGAGAGATACatGGTTCGAGGCACGAATGTTTACGGGATCTTGCGAGCTCCTCGCGCTCCTCGGACAGAAGCTCTGGTCATCACAGCTCCCTGCAGTCCTGGACACAGCAACAACCAGGCGGTCGGCCTCCTGCTGGCTCTCGCTCAGTATTTCAGGAACCAGATTTACTGGGCCAAGGACATCATCTTCTTGGTGAACGAGCACGATCTGATCGGCACGCAGGCCTGGCTGGAAGGCTACCACCACACCAACATCACAGGAATGGAGTACTCGCCGCTGCAGGGTCGCGCCGGGTCGATTCAAGCCGCGCTCTCATTGGAGCTCAGCAGTGATGTCATCACCAGCCTGGACCTGATTCTAGAAGGACTCAACGGCCAGCTGCCAAACCTGGACCTGGCCAATCTCTTCTATGCCTTCTGTCAGAAGCTAGGAGTCCTGTGCACCATTCAGGGAAAGCTCCAGAGGAACGACTGGGACACGGCCGAGGGCTACACTCACGCGGCGCAGACCATGATGCTGATGGTGTTGAAACAAGCTTGTGGCCGGTCCTGGGGAGATCACGGCCTCTTCCTGCGCTATCACATCGAAGCCGCTTCCATTCGAGGAATCAACAGTTTCAGACACTACAAAATGGACGCCACTACTACCGGCAGATTGCTGGAGGGAATGATCCGTAAACTCAACAATCTCCTGGAGCGTCTTCATCAGTCATATTTCTTCTACCTCTTGCCTTCCCTCTCTCGCTTTGTCTCCATTGGTTATTACATGCCGGCATTTGGCCTCCTGGCTGTCATCTTACTGCTTCGAGCGCTGGATCTCTGGGTTCATCTGGGATCACCAGCTCTGGCAGCAGTGGATGGAGTTACTGAAGCAGAGCAACCGTCCAGTCCGGGCGTGTTGACGGTGTTGACCCCGGTGGTGATCAGTCACCTGACAGGTGTGGCGCTGTACCTGCTTCCTGTTCATCTGCAGGAAATGGCTGTGGAGCACTTCCCCGTGTCTGAAACCGAAGCTGTGGTGCTCACCGCCATAGCCATCTATACCGCAGGCCTGGCTCTGCCACACAACACACAGCGGCTGCTGTCTGGAGAGGGCACTGAGCAGGGCTGGAAGGTGCTGAAGCTGACGGCTTTGCTCTATCTAGCTGTGTTGTTGGGCTGCACGGCCCTTATTAACTTCTCTCTGGGGTTCATCTTGGCGGTTACGCTGGTGCCGATCACCGCCAGCATCACGCCGCACATGCCCAAAGTTCTGTGCGCTCTGGCCATGGTGCTGCTCAGCCCTGCCTTCAGCATCCTCTACTGCGTCTTCATCTACCAGGAGCTGGTGGAAGCGCCCGTCGGCCTCGGCGAGGGCTGGATGCTCTTCCTCTCGGTCATCTCGCAGGGCATCCTGGATCACGCGCTCTACGGCTCGCTCGTGTATCCGCTCCTAGCCCTCTTCATTTATCCCTGCTGGCTAATGTTCTGGAACATTCTCTTCTGGAATTAACTTGTCTCAGATGGCTTTCTCGGGTAGCTTCGGATGGAGCCGTTTGCAAAACCAATCCCGCTTTGTGCCAATCACGGAGAGTTATTGTCCACCTGTGGGCGTTATCTGCCGTTAGGGATTGGCTGAAGGAAGATCTAGGAGGATGTCAGGCCCAGATAAAGAGGATTTAATGGCGAGGCTCCAGCGGGAAGAGTACTCTGGACAAAGTATTGAGGGTTTGGGTTCTGGGGAAAGGGGTTTGCATGAAGACAGAGGGATTACGATAAGATCCGATATTACCAGATGTGtggactttttacatttttcactggACACTGGAAGCTTATTTAATATGGTTTGATACTGAAAATTGAACAAAAGGAttgtttgtttgctcattttaaaatgacattacaaaagacagaaacaagacGAGTCTCCAAGActtatttctttaatgaattatatccgaattattacatttgtttcaGGCAACACTGGATTTATATGCTCTGATTAAGCACATgggtattaaatataattaaaatgcttgtttgtgtgcatttataataaagcCTTCCTGCCTTCCCTTCAA

Function

symbol description
gpaa1 Predicted to be involved in attachment of GPI anchor to protein. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human GPAA1 (glycosylphosphatidylinositol anchor attachment 1).

NR:

description
glycosylphosphatidylinositol anchor attachment 1 protein-like

GO:

id name namespace
GO:0042765 GPI-anchor transamidase complex cellular_component

KEGG:

id description
K05289 GAA1; GPI-anchor transamidase subunit GAA1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224133.1 True 2623 mRNA 0.53 14 4232659 4241076

Neighbor

gene id symbol gene type direction distance location
si:ch211-188c16.1 LOC107708601,LOC107562847 coding upstream 305 4224724 ~ 4232354 (+)
LOC122361024 dab1,c8b,LOC107671700,LOC107562846 coding upstream 15651 4179454 ~ 4217008 (+)
prkacbb prkacbb,LOC107600310,LOC107705125,LOC107660409,LOC108411205,LOC103034112,LOC106599750,LOC108267323 coding upstream 60912 4160156 ~ 4171747 (+)
LOC122323258 LOC107660407,LOC107671708,LOC107705103,LOC107562845 coding upstream 82872 4054024 ~ 4149787 (+)
tubb2 LOC101473957,LOC100702414,LOC107660405,LOC108239677,LOC103371147 coding upstream 234933 3993391 ~ 3997726 (+)
rpe65a rpe65a,rpe65,LOC107705134,LOC107708597,LOC107693590,LOC108436856 coding downstream 2032 4243108 ~ 4249001 (+)
ss18 ss18,LOC107671692,LOC107671559 coding downstream 46942 4288018 ~ 4295033 (+)
LOC122360677 znf521,LOC107562851,LOC107705137,LOC107708595,LOC107573008 coding downstream 64525 4305601 ~ 4376997 (+)
LOC122323876 LOC107565530 coding downstream 162705 4403781 ~ 4415800 (+)
LOC122323886 LOC107671547,LOC107565518 coding downstream 174848 4415924 ~ 4422167 (+)
G9362 NA non-coding upstream 8548 4223591 ~ 4224111 (+)
G9304 NA non-coding upstream 171683 4015450 ~ 4060976 (+)
G9302 LOC107600331,LOC107705102 non-coding upstream 211343 4013106 ~ 4021316 (+)
G9305 NA non-coding upstream 212944 4019339 ~ 4019715 (+)
G9241 NA non-coding upstream 316176 3886082 ~ 3916483 (+)
G9356 LOC107600323,LOC107671560,LOC107705133 non-coding downstream 19692 4260768 ~ 4266016 (+)
G9379 NA non-coding downstream 138500 4379576 ~ 4379832 (+)
G9382 LOC107671550,LOC107705116,LOC107671683,LOC107562856,LOC107708586,LOC107565517 non-coding downstream 145851 4386927 ~ 4387444 (+)
G9391 rpb4,polr2d,LOC106612892 non-coding downstream 218017 4459093 ~ 4462842 (+)
G9397 NA non-coding downstream 237233 4478309 ~ 4520645 (+)
G9361 NA other upstream 9547 4222239 ~ 4223112 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other upstream 442320 3756171 ~ 3790339 (+)
G9173 NA other upstream 553725 3676425 ~ 3678934 (+)
G9154 rock1,LOC107671690 other upstream 615616 3615482 ~ 3617043 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 1067836 3123124 ~ 3164823 (+)
G9416 wrnip1 other downstream 322821 4563897 ~ 4570094 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other downstream 331869 4572945 ~ 4589827 (+)
LOC122361055 LOC107565287,LOC107667819 other downstream 657296 4898372 ~ 4899380 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other downstream 668053 4909129 ~ 4911176 (+)
G9630 LOC107705308,LOC107564255,LOC107728403 other downstream 1367251 5608327 ~ 5609276 (+)

Expression


Co-expression Network