st6galnac3 (st6galnac3,LOC107599847,LOC107681790,LOC107558185)


Basic Information

Item Value
gene id st6galnac3
gene name st6galnac3,LOC107599847,LOC107681790,LOC107558185
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 706551 ~ 776800 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224288.1
TCAGGGATAGAGCATGAATAACGGTACTCCACAATATTTACTGAAATGTTTCATCGCCACACCAACGTCGGACATCCATGGCGCATGTAAATAAACCATTAAGCAGCCAACGCTGGCCTCTCCGTCTATAGATAGGCACGAACACTTCAGCACTGCGAGCTATTATTCAGTCTTAAGATGGCCTGGATCTGGAAGAAGAAGTCAATCATAGTGACCAGTCTGATTGTAGCGgtgtctctgtttttgttggTGATTAATTACTCAGAGAAACCCTACTTCCTGCTGCAGCCGGTGTTCGGCCAGAGCTTCAGTAGAAACTGGATGTTCTCTCGTCTGCCGCACAAAGCCTTCAAACCCCATCGCGGCTACCTCGGTGTCCCCGACCAGGAGccGTTGAAGCTGCACTGCGAGGTTTGCAGTATAGTGTCCAGCTCTGGCCAGATGCTGGGGCGTGAGGCGGGAGCAGAGATCGACCAATCCTCCTGCATCTGGAGAATGAACAACGCACCCACCCGTGGCTTTGAGAGGGACGTGGGCCGCAGGACAGACCTGAGAGTGGTGTCTCACACCAGTGTTCCTCTGCTAATTCAAAAACCCCAGCACTTCTTTGGCCAGGGGAATGAGACAGTTTATGTGGTGTGGGGACCCTTGCGCAACATGAGGCAGGATGGCAAGGGCATTGTGTATAACATGCTGCGGCAAGCGGTGGAAAACTACCCACACGCGCGCATCTACGTCACCACCGAGGACCGCATGAATTACTGCGACACTGTTTTCAAGAAGGAAACGGGCAAAGACAGGATTCAGTCGGGGTCGTATCTCAGCACCGGTTGGTTCACACTCATTCTGGCCATGGACATGTGCAAGGAGATCCGAGTCTACGGCATGATCAATGACACGTACTGCAAatcAGAAGGCTACAGGAAGGTGCCGTACCACTACTATGAAGCAGGAAGTCGTGACGAATGTGCCGAATACCTCTTGCACGAGAGCGCCCCTTATGGCGGCCACCGATTCATCACAGAGAAGGCTGTTTTCGCGAAATGGGCTAAGTCGCACCCCATCAAGTTTTTCAGCCCGGAGTGGCAGCTGTCATGACCAAGACTCCCATTCGTTCAGAATATCCCTTGATACTACAGCTCTGTTGGCTCGTTTCCCCTACATCGTAAAGTAATGTATTGGCTAAACGAATCATTCCAAATGCGATTTCAAATGGCAGTTGTTTGAGTGAAGTAAGTAGCCCATTGTGACCGCGAGGAGAGTTGTTAATGAACCTCGTGTTGATCCTGGTGTGATCAAATAGTGGATTTTGCATGTTGTCATTTTATTCTCATCTGGACAATCAAGTAGTGTATGTCGAGGCACACGTATTGCAGAAGAGATCTACAAAGAACGTCACATCCTTGCTTTAGCTTTCATTACCTTAAGTGGGCTCACTTTAGGGCTGGCAgatataacaaattatttttcaagTTATATTTCAATACCCTTCAGctttttgattatatttgaatatattttcgtttatatatatatatttttgaatatatgatGTATATGATTTTTCCCCACTGTTGGTTATATTATCGGTGAAGTAAATTCATACAACTTGCTAAAGAAACATTAGCAGCAACAACAGTACCACATACTCCATTGTGGCGTATGTTTGTTTGCGCTCGCCTAGACACTTACTAAGCACACACAGGACATCACCGGAAACGATAACGgtggcattttcaaaaatacacactttctaacatttttttaaaaaatacgtGTTTTCAGTCCCCAAAACACAGTTTTCATGTAAACGAAAAGTCAAAACGTTAATAAACTCTAATACAGTTTAGATTTTAGTAATGCTGCTAAATCAGATTTCACAGACTTTAGAAAACTTAATAGctatattaagttatttttttaattcctgcAGCATAATAATCGTGATAATTTGATATATCTTCCAGCCCTAgtttcatgtattattatttggcggttatttttattataatattattattgttattcttgTCTCATAGGTGAGCATTGGACTGAAACAGATCTTAGGAAAACAGTCACAGTcaaacattttacttaaataaaaaaaaacacaaaaatcgtAAACAATTTTCGCTACACCTCTGACATCCCTTTGGAAGCGTAACATTGAAAGCATCCTTTGAGCAGCTTAATAGGTCATTCAGGAACGTATTACTCcggttttttatttattccctGAACAAAAGAACACATATGCATTTGTTCATCTGAGACTGTAGAATACAAAGCGATATTCTGTTGTACGTGCCATGACAAGAACGCAGCATTGCTTACGATATCTAGGTCTGCTGTCGACAAAAGACTTGAAGAACGATTCAGAATGACTCAATTCAGATGTCAAGAACGTGCCTGTATGAAGTGTAGCGTATGTTGACTGTGCAAAGTAACCAATCCTTCATTTTTTATGccttatttgcttatttaaaaatgacactcCTGTCCACCACCCGTCAGCATCCTGAATTCCCGTGAGATGAAGCTACACCGCCTCTGTTGTCAGATCAGCAGGTTAATTTGATCAGCTGCTGTAGCTAAGTGTCGTAGCATCATATAAACCAGCAGACAATGCAGCGCTCTTGGGGCTCCCCTACCGCTTCGAGTCATCCGTTGTGCTTcaccttgtttttttcccccccatcaAACTAAGCATGCACTCTTTTTGCATGTATATCAAGAACATTTATCATCGCCGAAACAGTACGTAACAAGTTTTCACATCAGTTTGTGATTCTGACATCATCTGGCAGCTCAGCCCGGACAGCCTTTCTCTTCTAATGCACCACTCTGTGCATGTTTGACTAGCACTGCGACATCGTGTGAGCACCGTcacagctttttttccccaggaGAAGAAGATGGATGCACTGGCTGCGTGAAGGGAGAATTATATATGGCATGAGAATATGAGACTGATACACTGAACGGGAGGCAGGCGCCAGTTATGGAGCACTTTGATGAGATACTGCTCACGCCTCTGGCCAACCTGTTCATTAAAACAATTGATGTCAGCTCAATTTCTCAGAGTGCTGACCCAGGATCGTCATTTCCTGGCCTCTGTATTGATTTTGTTCACCGTGTGACATAAACCAGAGCTGTTCAAGAAATGGCACTTTcacattttcatgtatttttgactTTAGCTTGTGTTGTTCATGCCTCAGTCATACTTGATACTGTTAGGATATACACTTCATGACCAAAAGTATGTGGACAATACAGGgttttttgcagtatttttgtcttggtttttcttaaaaatttaattactttcGTATGTTTCTTAGcccatatatttatacatgaagCAGCGCCAAAAATGTTGCTAAAggtatgagattttttttaacaacattaacaataataaaagtttacactactgtatatatactatatactatactatatat
>XM_043224296.1
TCAGGGATAGAGCATGAATAACGGTACTCCACAATATTTACTGAAATGTTTCATCGCCACACCAACGTCGGACATCCATGGCGCATGTAAATAAACCATTAAGCAGCCAACGCTGGCCTCTCCGTCTATAGATAGGCACGAACACTTCAGCACTGCGAGCTATTATTCAGTCTTAAGATGGCCTGGATCTGGAAGAAGTCAATCATAGTGACCAGTCTGATTGTAGCGgtgtctctgtttttgttggTGATTAATTACTCAGAGAAACCCTACTTCCTGCTGCAGCCGGTGTTCGGCCAGAGCTTCAGTAGAAACTGGATGTTCTCTCGTCTGCCGCACAAAGCCTTCAAACCCCATCGCGGCTACCTCGGTGTCCCCGACCAGGAGccGTTGAAGCTGCACTGCGAGGTTTGCAGTATAGTGTCCAGCTCTGGCCAGATGCTGGGGCGTGAGGCGGGAGCAGAGATCGACCAATCCTCCTGCATCTGGAGAATGAACAACGCACCCACCCGTGGCTTTGAGAGGGACGTGGGCCGCAGGACAGACCTGAGAGTGGTGTCTCACACCAGTGTTCCTCTGCTAATTCAAAAACCCCAGCACTTCTTTGGCCAGGGGAATGAGACAGTTTATGTGGTGTGGGGACCCTTGCGCAACATGAGGCAGGATGGCAAGGGCATTGTGTATAACATGCTGCGGCAAGCGGTGGAAAACTACCCACACGCGCGCATCTACGTCACCACCGAGGACCGCATGAATTACTGCGACACTGTTTTCAAGAAGGAAACGGGCAAAGACAGGATTCAGTCGGGGTCGTATCTCAGCACCGGTTGGTTCACACTCATTCTGGCCATGGACATGTGCAAGGAGATCCGAGTCTACGGCATGATCAATGACACGTACTGCAAatcAGAAGGCTACAGGAAGGTGCCGTACCACTACTATGAAGCAGGAAGTCGTGACGAATGTGCCGAATACCTCTTGCACGAGAGCGCCCCTTATGGCGGCCACCGATTCATCACAGAGAAGGCTGTTTTCGCGAAATGGGCTAAGTCGCACCCCATCAAGTTTTTCAGCCCGGAGTGGCAGCTGTCATGACCAAGACTCCCATTCGTTCAGAATATCCCTTGATACTACAGCTCTGTTGGCTCGTTTCCCCTACATCGTAAAGTAATGTATTGGCTAAACGAATCATTCCAAATGCGATTTCAAATGGCAGTTGTTTGAGTGAAGTAAGTAGCCCATTGTGACCGCGAGGAGAGTTGTTAATGAACCTCGTGTTGATCCTGGTGTGATCAAATAGTGGATTTTGCATGTTGTCATTTTATTCTCATCTGGACAATCAAGTAGTGTATGTCGAGGCACACGTATTGCAGAAGAGATCTACAAAGAACGTCACATCCTTGCTTTAGCTTTCATTACCTTAAGTGGGCTCACTTTAGGGCTGGCAgatataacaaattatttttcaagTTATATTTCAATACCCTTCAGctttttgattatatttgaatatattttcgtttatatatatatatttttgaatatatgatGTATATGATTTTTCCCCACTGTTGGTTATATTATCGGTGAAGTAAATTCATACAACTTGCTAAAGAAACATTAGCAGCAACAACAGTACCACATACTCCATTGTGGCGTATGTTTGTTTGCGCTCGCCTAGACACTTACTAAGCACACACAGGACATCACCGGAAACGATAACGgtggcattttcaaaaatacacactttctaacatttttttaaaaaatacgtGTTTTCAGTCCCCAAAACACAGTTTTCATGTAAACGAAAAGTCAAAACGTTAATAAACTCTAATACAGTTTAGATTTTAGTAATGCTGCTAAATCAGATTTCACAGACTTTAGAAAACTTAATAGctatattaagttatttttttaattcctgcAGCATAATAATCGTGATAATTTGATATATCTTCCAGCCCTAgtttcatgtattattatttggcggttatttttattataatattattattgttattcttgTCTCATAGGTGAGCATTGGACTGAAACAGATCTTAGGAAAACAGTCACAGTcaaacattttacttaaataaaaaaaaacacaaaaatcgtAAACAATTTTCGCTACACCTCTGACATCCCTTTGGAAGCGTAACATTGAAAGCATCCTTTGAGCAGCTTAATAGGTCATTCAGGAACGTATTACTCcggttttttatttattccctGAACAAAAGAACACATATGCATTTGTTCATCTGAGACTGTAGAATACAAAGCGATATTCTGTTGTACGTGCCATGACAAGAACGCAGCATTGCTTACGATATCTAGGTCTGCTGTCGACAAAAGACTTGAAGAACGATTCAGAATGACTCAATTCAGATGTCAAGAACGTGCCTGTATGAAGTGTAGCGTATGTTGACTGTGCAAAGTAACCAATCCTTCATTTTTTATGccttatttgcttatttaaaaatgacactcCTGTCCACCACCCGTCAGCATCCTGAATTCCCGTGAGATGAAGCTACACCGCCTCTGTTGTCAGATCAGCAGGTTAATTTGATCAGCTGCTGTAGCTAAGTGTCGTAGCATCATATAAACCAGCAGACAATGCAGCGCTCTTGGGGCTCCCCTACCGCTTCGAGTCATCCGTTGTGCTTcaccttgtttttttcccccccatcaAACTAAGCATGCACTCTTTTTGCATGTATATCAAGAACATTTATCATCGCCGAAACAGTACGTAACAAGTTTTCACATCAGTTTGTGATTCTGACATCATCTGGCAGCTCAGCCCGGACAGCCTTTCTCTTCTAATGCACCACTCTGTGCATGTTTGACTAGCACTGCGACATCGTGTGAGCACCGTcacagctttttttccccaggaGAAGAAGATGGATGCACTGGCTGCGTGAAGGGAGAATTATATATGGCATGAGAATATGAGACTGATACACTGAACGGGAGGCAGGCGCCAGTTATGGAGCACTTTGATGAGATACTGCTCACGCCTCTGGCCAACCTGTTCATTAAAACAATTGATGTCAGCTCAATTTCTCAGAGTGCTGACCCAGGATCGTCATTTCCTGGCCTCTGTATTGATTTTGTTCACCGTGTGACATAAACCAGAGCTGTTCAAGAAATGGCACTTTcacattttcatgtatttttgactTTAGCTTGTGTTGTTCATGCCTCAGTCATACTTGATACTGTTAGGATATACACTTCATGACCAAAAGTATGTGGACAATACAGGgttttttgcagtatttttgtcttggtttttcttaaaaatttaattactttcGTATGTTTCTTAGcccatatatttatacatgaagCAGCGCCAAAAATGTTGCTAAAggtatgagattttttttaacaacattaacaataataaaagtttacactactgtatatatactatatactatactatatat

Function

symbol description
st6galnac3 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; and intestine. Orthologous to human ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3).

NR:

description
PREDICTED: proteoglycan 4-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03373 SIAT7C, ST6GalNAc III; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224288.1 True 3467 mRNA 0.42 5 706551 776800
XM_043224296.1 False 3464 mRNA 0.42 5 706551 776800

Neighbor

gene id symbol gene type direction distance location
cope cope,LOC107709006,LOC107690966,LOC107681743 coding upstream 9887 693217 ~ 696664 (+)
slc25a24l slc25a24l,LOC107708925,LOC107681683,LOC107751862,LOC107566460,LOC107599866 coding upstream 13713 685223 ~ 692838 (+)
txndc12 txndc12,LOC107708672,LOC107681819,LOC107690994,LOC107599851,LOC107566463,LOC107739415 coding upstream 39200 663791 ~ 667351 (+)
zmp:0000001127 NA coding upstream 44551 658757 ~ 662000 (+)
zgc:153615 zgc:153615,LOC107747506,LOC107691014,LOC107708656,LOC107599852,LOC108430722,LOC103026425 coding upstream 51770 648984 ~ 654781 (+)
ak5 ak5,LOC107681791,LOC107599844,LOC107703241 coding downstream 98958 875758 ~ 952394 (+)
miga1 miga1,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 coding downstream 219037 995837 ~ 1006604 (+)
si:ch211-71m22.3 NA coding downstream 242947 1019747 ~ 1024763 (+)
LOC122357034 LOC107599864,LOC107681686,LOC107708940 coding downstream 250493 1027293 ~ 1032989 (+)
LOC122324991 NA coding downstream 258875 1035675 ~ 1039604 (+)
G8173 NA non-coding upstream 34988 668304 ~ 671563 (+)
LOC122328698 NA non-coding upstream 61625 643034 ~ 644926 (+)
LOC122325219 NA non-coding upstream 71785 634151 ~ 634766 (+)
G8151 NA non-coding upstream 102606 571029 ~ 603945 (+)
G8394 NA non-coding downstream 403330 1180130 ~ 1186032 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding downstream 420627 1197427 ~ 1203014 (+)
G8451 NA non-coding downstream 605319 1382119 ~ 1382323 (+)
G8449 NA non-coding downstream 607092 1383892 ~ 1385986 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding downstream 630851 1407651 ~ 1425295 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 248806 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 461187 241451 ~ 245364 (+)
G8167 NA other upstream 483184 200092 ~ 223367 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other downstream 23132 799932 ~ 828405 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 620724 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 767973 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 1126267 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 1156712 1933512 ~ 1936759 (+)

Expression


Co-expression Network