rgs18 (rgs18,LOC107681733,LOC107715502,LOC107701327,LOC107560778,LOC107722673)


Basic Information

Item Value
gene id rgs18
gene name rgs18,LOC107681733,LOC107715502,LOC107701327,LOC107560778,LOC107722673
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1848086 ~ 1855235 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224318.1
GGTCTGTGTGACTCTACGGCTGTTGATTAAATGAAGATGTCACCCTTGTCTCTGTCTGAGGACATTTCTATTCCCTCCTGTCATTTATTGTGCCGAAACAGATTTGTCCATCATTATAATGGCTCTTCAGAGGCAACAGCCACGTTTAACTTCTCTGCCCCCAAGGAGGAAGCATATTTCAAAATGCTCAGTGAGGACGAGCTGCTCGCCGGCAGAATGAGAGAGACCAACTTGAGGAGTAAGGATAAAAAAGGTCGACTCAGTCTTCTTCTGGCAAGGTCTGGATCTCATGAGAATGTCAGTCCTGAAAAGAAACCAACAGCTAAAACCAACCACATCACGCCAGACGTGGCTCTGAGATGGGGTAATTCATTTGAGGAGCTGCTGAGTCACTCAGATGGGGTGGAAGTCTTCACGCGGTTTCTGCGCACCGAATTCAGCGAGGAAAACATCGAGTTTTGGTTAGCCTGTGAAGAATTCAAGAATACTGAGTCTGCAACCAAACTGCAGTCTAAAGCCAAACAGATACATGCCATTTTCATCGATAAGGAAGCACCCAAAGAGATCAACATCGACCACTCGACCAAGGCCACCATTGAGAAGAACATCCTGAAGCCAAACAGGTCCTGCTTTGAGgtagcacaaaataaaatctacagCTTAATGAAAAGAGACTGCTACCCACGATTCCTCACCTCCGACATCTACTTGACCCTGACCAAGAGGGCAGGCCCGCCCACTATGACCAGGAGAAGGTCCCGCTCCTTCGTTTTTAATGAGCGTCCTGAAGGCACAGCCGCCTGGTTGTAAATATGTACTGTGAtgctagttttttttaatcattgtcGATAGCACTTGATCGTGGGACGCGTCCTAgctatttattaacattagatCCTGTGGGCTGGTATTTAAATACTAATCATCCTGTCGTGATTGTCAAACGTTCATGAGTTCGTGCAAATCATAATTTAACCTACATGTTTAGAATGCCTAAACActgtaaataactgtttaacGATAGATGTCTGTATGATAAACTGTACATATTTGTGGCCTACAGAGAACTGTAACAGCGACCGCTGTCGCGACACTCTTAAAGAGAgcaaaaactttgaaaaataaaaaggtttctgAGGAAAAAGTGA
>XM_043224326.1
CCTGTTGTGGCTTAGAAGGAAATAGGATGTTTAGCAGAACTTGACTAAAGCATACTgcgtgaaaataaatgtaaaaatacgtAAACTTAGCTAGATGGATGTCCCGCAGCAAGAAAACTCGAGCAGAGAGATATTACAGTAAATGGCGGGTATTTTCCCTGACAGGAAGTCATCTTAACAGTTTAACTTCTCTGCCCCCAAGGAGGAAGCATATTTCAAAATGCTCAGTGAGGACGAGCTGCTCGCCGGCAGAATGAGAGAGACCAACTTGAGGAGTAAGGATAAAAAAGGTCGACTCAGTCTTCTTCTGGCAAGGTCTGGATCTCATGAGAATGTCAGTCCTGAAAAGAAACCAACAGCTAAAACCAACCACATCACGCCAGACGTGGCTCTGAGATGGGGTAATTCATTTGAGGAGCTGCTGAGTCACTCAGATGGGGTGGAAGTCTTCACGCGGTTTCTGCGCACCGAATTCAGCGAGGAAAACATCGAGTTTTGGTTAGCCTGTGAAGAATTCAAGAATACTGAGTCTGCAACCAAACTGCAGTCTAAAGCCAAACAGATACATGCCATTTTCATCGATAAGGAAGCACCCAAAGAGATCAACATCGACCACTCGACCAAGGCCACCATTGAGAAGAACATCCTGAAGCCAAACAGGTCCTGCTTTGAGgtagcacaaaataaaatctacagCTTAATGAAAAGAGACTGCTACCCACGATTCCTCACCTCCGACATCTACTTGACCCTGACCAAGAGGGCAGGCCCGCCCACTATGACCAGGAGAAGGTCCCGCTCCTTCGTTTTTAATGAGCGTCCTGAAGGCACAGCCGCCTGGTTGTAAATATGTACTGTGAtgctagttttttttaatcattgtcGATAGCACTTGATCGTGGGACGCGTCCTAgctatttattaacattagatCCTGTGGGCTGGTATTTAAATACTAATCATCCTGTCGTGATTGTCAAACGTTCATGAGTTCGTGCAAATCATAATTTAACCTACATGTTTAGAATGCCTAAACActgtaaataactgtttaacGATAGATGTCTGTATGATAAACTGTACATATTTGTGGCCTACAGAGAACTGTAACAGCGACCGCTGTCGCGACACTCTTAAAGAGAgcaaaaactttgaaaaataaaaaggtttctgAGGAAAAAGTGA

Function

symbol description
rgs18 Predicted to enable GTPase activator activity. Acts upstream of or within anterior/posterior axis specification; sensory organ development; and thrombocyte differentiation. Is expressed in brain; eye; otic vesicle; and presumptive brain. Orthologous to human RGS18 (regulator of G protein signaling 18).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0071599 otic vesicle development biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0048840 otolith development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0048884 neuromast development biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224318.1 False 1148 mRNA 0.44 6 1848086 1855235
XM_043224326.1 True 1185 mRNA 0.44 6 1849044 1855235

Neighbor

gene id symbol gene type direction distance location
LOC122361145 dbt,LOC107681723,LOC107715513,LOC107593857,LOC108411488 coding upstream 249823 1591993 ~ 1598263 (+)
extl2 extl2,LOC107722455 coding upstream 279544 1563005 ~ 1568542 (+)
zgc:153115 zgc:153115,LOC107722210,LOC107701340,LOC107681793,LOC105889440,LOC105030379,LOC106568757 coding upstream 322512 1517697 ~ 1525574 (+)
asip2b agrp2,LOC107593895,LOC107715506,LOC107701329,LOC107681750,LOC107722688,LOC107568624 coding upstream 375237 1469060 ~ 1472849 (+)
LOC122360630 LOC107681692 coding upstream 400187 1440938 ~ 1447899 (+)
rgs1 LOC107681696,LOC107560781,LOC107701325,LOC107722662 coding downstream 9270 1864505 ~ 1867191 (+)
rgs13 LOC107715509,LOC107593894,LOC107681737,LOC107560784,LOC107722654,LOC107701324 coding downstream 18787 1874022 ~ 1876886 (+)
si:dkey-119f1.1 si:dkey-119f1.1,LOC107593797,LOC107701334,LOC107722422,LOC107560764 coding downstream 25456 1880691 ~ 1901747 (+)
ppm1la ppm1l,ppm1la,LOC107681725,LOC107722109,LOC107701333,LOC100694563,LOC103365160 coding downstream 67817 1923052 ~ 1932630 (+)
ipo13a si:ch73-182a11.2,LOC107593890,LOC107681711,LOC107560786,LOC107722396 coding downstream 101941 1957176 ~ 1971483 (+)
G8556 NA non-coding upstream 164993 1681427 ~ 1683093 (+)
G8508 NA non-coding upstream 174331 1599046 ~ 1673755 (+)
G8519 nos1apb,LOC107715504,LOC107593855,LOC107681742,LOC107560777,LOC107701337 non-coding upstream 211464 1632316 ~ 1636622 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding upstream 422791 1407651 ~ 1425295 (+)
G8449 NA non-coding upstream 462100 1383892 ~ 1385986 (+)
G8585 LOC107701323,LOC107593893,LOC107719279,LOC107560771,LOC107722646 non-coding downstream 63471 1918706 ~ 1919313 (+)
G8586 NA non-coding downstream 64177 1919412 ~ 1922223 (+)
LOC122362698 NA non-coding downstream 70625 1925860 ~ 1929567 (+)
LOC122355709 LOC107593853,LOC107719278,LOC107681699 non-coding downstream 91893 1947128 ~ 1948362 (+)
G8670 tmem125b,LOC107681734,LOC107719290,LOC107593887 non-coding downstream 198076 2053311 ~ 2055730 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other upstream 288312 1544773 ~ 1559774 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other upstream 439365 1397524 ~ 1408721 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 1019681 799932 ~ 828405 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 1390341 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 1602722 241451 ~ 245364 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 47832 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 78277 1933512 ~ 1936759 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 323531 2178766 ~ 2191448 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other downstream 415444 2270679 ~ 2288216 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other downstream 543719 2398954 ~ 2401745 (+)

Expression


Co-expression Network