vcam1a (LOC107715496)


Basic Information

Item Value
gene id vcam1a
gene name LOC107715496
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1570281 ~ 1575411 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224468.1
agaaaaagaaagtgaaaaggAATAGGCGGGATGGCTGATCGGTATCTTGGTTGGAAAAAAGCCGTGGTGGGAATATCCAACATCGTCCACCGTGTTATTTCTCAATTTGTGTGCTGAATGAGTGAAACACGACGGCGGAAAAATGCGTGGAGTGAAATGCATCAGTTTTGCGCTGTGGATTAATATTCTCAGCGTGATGACAGcaGAAAATGATTTCAGTCTGGAATTAACTCCATCAAATCCTGTGATTCATGTTGGTGAGGATTTGGAGCTGACCTGTCGAGTGAGCGGTTGTCCGTTTAATGTGACCTTCATCTGGAAAGCAACACTGGATGAATTTCTCGGTGGAGAGATTAAAAACGAGCAGAATGTTTCCCGTCTGCTGATCAGGAACATCTCTGTCAAACACAGTAATAAAGTTGTGTGCAAAGCTACTTGTCCGATGAAACCGTCAGGAAGAGAGAAAACggcaaatatacaaatgttcTCATTTCCAGAAGATCCCATAGTGCCCAAAATAAAGAGTTTGACAGCAAACCAAACCCAGAAGCTTACCTGCACAGTCCACAACATTTACCCTCCGGAAAGGTTTCAGGTTGAGTGGCTTCGAGGAAATACCGTCCTCCATAAGGACCGACTGCAAGTAGAACATTTAGACCACGTTCAGAATTATTCCTTTGTGTACAATTACACACCTTCTGTTGATGATCTGGGCAAGAATATCAGTTGCAAGGCAACAATGAATCTCAGCCTCGTCAAGCAAGAGAGAACAACAACTGCTGAATATGGTCCAGGGACTATAACAGTTTCCAGTAATAATGCTTTGGTAAAGATTGGCGAACCCTTGGAGATAGCATGTCACGCAGACGGAAACCCCAAACCAACAATCTCATGGTGGAAACTAGAGAATAAGCCTGAACTCCAGAGTCATAACCACACGCTGATCATAAACAATGCTTCCTGGTCTCAGGCTGGTTGGTATCAGTGTAATGCCAGCAATGGTGCGGGAAGCCAGCAAGCGAGAATAAAAGTCATCGTTGTAGgtCCTCCAAACATCCCTAGAATCCAGTTAAGCCATGAAGAGGAGCCTAAAGAAGGAGAGAGCATAAGCATATTCTGTTCTTCAGACGGCAGGCCAGCAAAACTCAAGCTTTACAGACAGTCCCAGACCATTGCAACAGGAGATCCCGACAAATCAGCTGTGCTTTTAAACATCACATCAGTCCAAACAACTGATGCAGGGATTTACATCTGTGAAGCAATAAATGAGTTTGGCTTTGAGAGGAGCACAATCAACATTACAGTCCAAGCAGCACAAGAAGACATACGGAGCAAAGTGGACCTCCTGTGATCATACTGCCGACTATAGGGTCAGTGTCGCTGTTGACCGCTGCAGGACTGCTGATCAGACACTGCAGAAAGAAAGTCAAGAAAGACTCCAGTAACATCACACTCAACTAAACAGACTCaactttatatttctgaaatgtttctttataatctttattttat
>XM_043224477.1
agaaaaagaaagtgaaaaggAATAGGCGGGATGGCTGATCGGTATCTTGGTTGGAAAAAAGCCGTGGTGGGAATATCCAACATCGTCCACCGTGTTATTTCTCAATTTGTGTGCTGAATGAGTGAAACACGACGGCGGAAAAATGCGTGGAGTGAAATGCATCAGTTTTGCGCTGTGGATTAATATTCTCAGCGTGATGACAGcaGAAAATGATTTCAGTCTGGAATTAACTCCATCAAATCCTGTGATTCATGTTGGTGAGGATTTGGAGCTGACCTGTCGAGTGAGCGGTTGTCCGTTTAATGTGACCTTCATCTGGAAAGCAACACTGGATGAATTTCTCGGTGGAGAGATTAAAAACGAGCAGAATGTTTCCCGTCTGCTGATCAGGAACATCTCTGTCAAACACAGTAATAAAGTTGTGTGCAAAGCTACTTGTCCGATGAAACCGTCAGGAAGAGAGAAAACggcaaatatacaaatgttcTCATTTCCAGAAGATCCCATAGTGCCCAAAATAAAGAGTTTGACAGCAAACCAAACCCAGAAGCTTACCTGCACAGTCCACAACATTTACCCTCCGGAAAGGTTTCAGGTTGAGTGGCTTCGAGGAAATACCGTCCTCCATAAGGACCGACTGCAAGTAGAACATTTAGACCACGTTCAGAATTATTCCTTTGTGTACAATTACACACCTTCTGTTGATGATCTGGGCAAGAATATCAGTTGCAAGGCAACAATGAATCTCAGCCTCGTCAAGCAAGAGAGAACAACAACTGCTGAATATGGTCCAGGGACTATAACAGTTTCCAGTAATAATGCTTTGGTAAAGATTGGCGAACCCTTGGAGATAGCATGTCACGCAGACGGAAACCCCAAACCAACAATCTCATGGTGGAAACTAGAGAATAAGCCTGAACTCCAGAGTCATAACCACACGCTGATCATAAACAATGCTTCCTGGTCTCAGGCTGGTTGGTATCAGTGTAATGCCAGCAATGGTGCGGGAAGCCAGCAAGCGAGAATAAAAGTCATCGTTGTAGgtCCTCCAAACATCCCTAGAATCCAGTTAAGCCATGAAGAGGAGCCTAAAGAAGGAGAGAGCATAAGCATATTCTGTTCTTCAGACGGCAGGCCAGCAAAACTCAAGCTTTACAGACAGTCCCAGACCATTGCAACAGGAGATCCCGACAAATCAGCTGTGCTTTTAAACATCACATCAGTCCAAACAACTGATGCAGGGATTTACATCTGTGAAGCAATAAATGAGTTTGGCTTTGAGAGGAGCACAATCAACATTACAGTCCAAGCACAAGAAGACATACGGAGCAAAGTGGACCTCCTGTGATCATACTGCCGACTATAGGGTCAGTGTCGCTGTTGACCGCTGCAGGACTGCTGATCAGACACTGCAGAAAGAAAGTCAAGAAAGACTCCAGTAACATCACACTCAACTAAACAGACTCaactttatatttctgaaatgtttctttataatctttattttat
>XM_043224486.1
agaaaaagaaagtgaaaaggAATAGGCGGGATGGCTGATCGGTATCTTGGTTGGAAAAAAGCCGTGGTGGGAATATCCAACATCGTCCACCGTGTTATTTCTCAATTTGTGTGCTGAATGAGTGAAACACGACGGCGGAAAAATGCGTGGAGTGAAATGCATCAGTTTTGCGCTGTGGATTAATATTCTCAGCGTGATGACAGAAAATGATTTCAGTCTGGAATTAACTCCATCAAATCCTGTGATTCATGTTGGTGAGGATTTGGAGCTGACCTGTCGAGTGAGCGGTTGTCCGTTTAATGTGACCTTCATCTGGAAAGCAACACTGGATGAATTTCTCGGTGGAGAGATTAAAAACGAGCAGAATGTTTCCCGTCTGCTGATCAGGAACATCTCTGTCAAACACAGTAATAAAGTTGTGTGCAAAGCTACTTGTCCGATGAAACCGTCAGGAAGAGAGAAAACggcaaatatacaaatgttcTCATTTCCAGAAGATCCCATAGTGCCCAAAATAAAGAGTTTGACAGCAAACCAAACCCAGAAGCTTACCTGCACAGTCCACAACATTTACCCTCCGGAAAGGTTTCAGGTTGAGTGGCTTCGAGGAAATACCGTCCTCCATAAGGACCGACTGCAAGTAGAACATTTAGACCACGTTCAGAATTATTCCTTTGTGTACAATTACACACCTTCTGTTGATGATCTGGGCAAGAATATCAGTTGCAAGGCAACAATGAATCTCAGCCTCGTCAAGCAAGAGAGAACAACAACTGCTGAATATGGTCCAGGGACTATAACAGTTTCCAGTAATAATGCTTTGGTAAAGATTGGCGAACCCTTGGAGATAGCATGTCACGCAGACGGAAACCCCAAACCAACAATCTCATGGTGGAAACTAGAGAATAAGCCTGAACTCCAGAGTCATAACCACACGCTGATCATAAACAATGCTTCCTGGTCTCAGGCTGGTTGGTATCAGTGTAATGCCAGCAATGGTGCGGGAAGCCAGCAAGCGAGAATAAAAGTCATCGTTGTAGgtCCTCCAAACATCCCTAGAATCCAGTTAAGCCATGAAGAGGAGCCTAAAGAAGGAGAGAGCATAAGCATATTCTGTTCTTCAGACGGCAGGCCAGCAAAACTCAAGCTTTACAGACAGTCCCAGACCATTGCAACAGGAGATCCCGACAAATCAGCTGTGCTTTTAAACATCACATCAGTCCAAACAACTGATGCAGGGATTTACATCTGTGAAGCAATAAATGAGTTTGGCTTTGAGAGGAGCACAATCAACATTACAGTCCAAGCAGCACAAGAAGACATACGGAGCAAAGTGGACCTCCTGTGATCATACTGCCGACTATAGGGTCAGTGTCGCTGTTGACCGCTGCAGGACTGCTGATCAGACACTGCAGAAAGAAAGTCAAGAAAGACTCCAGTAACATCACACTCAACTAAACAGACTCaactttatatttctgaaatgtttctttataatctttattttat

Function

NR:

description
PREDICTED: vascular cell adhesion protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224468.1 True 1512 mRNA 0.44 6 1570281 1575411
XM_043224477.1 False 1509 mRNA 0.44 6 1570281 1575411
XM_043224486.1 False 1509 mRNA 0.44 6 1570281 1575411

Neighbor

gene id symbol gene type direction distance location
zgc:110366 zgc:110366,LOC107681729,LOC107715516,LOC107578550 coding downstream 7668 1559777 ~ 1562613 (-)
LOC122360826 LOC107701342,LOC107722497,LOC107701321,LOC107722488,LOC107568618,LOC107577250,LOC107578884 coding downstream 55286 1476248 ~ 1514995 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding downstream 129518 1427876 ~ 1440763 (-)
LOC122323714 LOC107715522,LOC107681815,LOC108437516,LOC108267691,LOC105889505 coding downstream 144986 1415345 ~ 1425295 (-)
wu:fc46h12 NA coding downstream 157028 1408869 ~ 1413253 (-)
cdc14aa cdc14a,cdc14aa,LOC107681715,LOC107715514,LOC107722177,LOC107593800,LOC107701316,LOC108411489 coding upstream 140 1575551 ~ 1590010 (-)
xpr1b xpr1b,xpr1,LOC107593799,LOC107681714,LOC107722139,LOC107715512,LOC108267842,LOC107701314 coding upstream 23631 1599042 ~ 1616754 (-)
ddr2b LOC107715505 coding upstream 41824 1617235 ~ 1628178 (-)
nos1apb nos1apb,LOC107715504,LOC107681742,LOC107560777,LOC107701337,LOC107722434 coding upstream 56905 1632316 ~ 1642015 (-)
rgs5b rgs5b,LOC107577006,LOC107701328,LOC107722680,LOC107560779,LOC107715503 coding upstream 73148 1648559 ~ 1649838 (-)
G8489 LOC107696015,LOC107710542,LOC107721879 non-coding downstream 107767 1462060 ~ 1462514 (-)
G8479 NA non-coding downstream 170553 1399408 ~ 1399728 (-)
G8443 NA non-coding downstream 237177 1332845 ~ 1333104 (-)
G8439 LOC107722542 non-coding downstream 259990 1309945 ~ 1310291 (-)
G8415 NA non-coding downstream 321691 1248176 ~ 1248590 (-)
G8599 NA non-coding upstream 264761 1840172 ~ 1876938 (-)
G8623 ppm1la,ppm1l,LOC107681725,LOC107722109,LOC107701333,LOC101065476,LOC106534897 non-coding upstream 347873 1923284 ~ 1929991 (-)
G8622 ppm1l,LOC107560765,LOC107722109,LOC107681725,LOC107701312,LOC107701333 non-coding upstream 355213 1930624 ~ 1932631 (-)
G8630 NA non-coding upstream 374780 1950191 ~ 1950400 (-)
G8640 NA non-coding upstream 408698 1984109 ~ 1987070 (-)
colgalt2a LOC107593860,LOC107681694,LOC107715500 other downstream 37724 1525748 ~ 1532557 (-)
mfsd8l2 si:ch211-38m6.6,LOC107681768,LOC107656858,LOC107565819,LOC107722537,LOC107599859,LOC108437504,LOC105026921 other downstream 232283 1331430 ~ 1337998 (-)
dipk2aa dia1a,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108437525,LOC108268022 other downstream 367294 1179945 ~ 1202987 (-)
LOC122325167 NA other downstream 966337 119350 ~ 603944 (-)
gng5 NA other upstream 346884 1922295 ~ 1940721 (-)
slc1a7a slc1a7a,slc1a7,LOC107722044,LOC107671767,LOC107681716,LOC107593788 other upstream 440997 2016408 ~ 2038705 (-)
tmem125b tmem125b,LOC107719275,LOC107681700,LOC107681734,LOC107719290,LOC107593887 other upstream 475019 2050430 ~ 2055709 (-)
LOC122355284 NA other upstream 499887 2075298 ~ 2128540 (-)
insl5b LOC107719258,LOC107593780 other upstream 723385 2298796 ~ 2301360 (-)

Expression


Co-expression Network