si:ch211-71m22.1 (si:ch211-71m22.1,LOC107722310,LOC107703220,LOC107599861,LOC107558181,LOC107681688)


Basic Information

Item Value
gene id si:ch211-71m22.1
gene name si:ch211-71m22.1,LOC107722310,LOC107703220,LOC107599861,LOC107558181,LOC107681688
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1062189 ~ 1067442 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224725.1
taaagagattTTCCTGCCGTCAGTCTCTTTCGGTTTTCAGTAAGGGGTGTGTTCGTGAGGAGATTGTTTCCCGGGAAGGAAACTCGTGCGCGGTGTGTGAGGCAGATAAAGAGCGAAGAGAAACACTGTAAACGTCGCccactaaaataataacaatatagaAAAATACCGGCCTCTTTTCGAGCGGAATTGGAGTTAAATTTAAGTATAAAGGACTACGACACGAGACCAACGGCAACGGTATCCACAGCACTTCCCTCTTGACAAGTAACAGAGCGTAGTTTGCAGCTTTCCACCATGGCGACAAATAATGGTTACCCAATTGACCTCCAACCACAGAAAAATTCAATGAATCCCGCGCCTCCTTATAACCAGGGACCAGCCATGCCAGGCCAGGGTCAAGTTCCCGTGATGCCAGTTCCACAAAGACCCGCTGGCTGCCCTCCAGGACTGGAGTACCTGACCCAGATTGATCAACTTCTTGTACATCAGAAAGTTGAGCTGGCAGAAGTGATATTGGGCTGGGAGACCAATAATAAGTACACAGTGACGAACAGTATGGGGCAACAGGTGTTCTTTGTGGCTGAGGAGAACGACTGCTGTAATAGACAGTTCTGTGGGCCGCTGCGTTCGTTCGTCCTCCACGTTCAGGATAACATGGGACAGGAAGTGATGACACTCACTCGTCCTTTGAAGTGCGGAAGCTGCTGTTTTCCCTGCTGCCTGCAAGAGCTTGAAATCCAGTCTCCACCTGGCAACCCGATTGGATACGTGATCCAGAATTGGCATCCTTTCGTTCCCAAGTATACCGTCCAGAATGAGAAAAAGGAAGCCGTTCTGAAGATCGTGGGGCCGTTCTGTTCATGCAGATGTTGCGCTGATGTGAACTTTGATgttttGTCTGTGGACGAATCAACAAAGGTTGGCCGAATCGCTAAACAATGGACAGGTCTGGTGAGGGAAGCTTTCACCGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGACGTGAAGATCAAAGCTGCTCTTTTCGGAGCGTGTTTTCTTATAGACTTCATGTTCTtcgaacacaataaataatttattttctggaTGTCATTGTTTCAGCATTTCGAACGTATGAACTCCTCCTCAGCTCTCAACATGTTAACCGTGGATTCAAATGTGGATCACTCAgctaaattttatattatatcatacatATTATTATGTGCAGGTGTATTCTTTCACTACTGTTCCTGAGCCACCACTAGGTGACAGCAGTTCCCTTTATCATAATGTTGACATACTCTTTGTATTACCAAAGTACCTGCTCTAAAAGCTTCGCCAAAAACGAAATGCaaactattaaaattatttttttagtacaaTATAAGCAAAATGTTAACCGCTTAATTTTGCCCAATTTGTTTGTGTGCTTATAATAAACTGTAGAATAAAGTGTTATACATCAA
>XM_043224735.1
GGTGTAAAAAGATACAGAAACAGGTTGTGCAGTCGTTCCAGAGGAACCAGTACCATTTGTCTCTGAGCGTAGTTTGCAGCTTTCCACCATGGCGACAAATAATGGTTACCCAATTGACCTCCAACCACAGAAAAATTCAATGAATCCCGCGCCTCCTTATAACCAGGGACCAGCCATGCCAGGCCAGGGTCAAGTTCCCGTGATGCCAGTTCCACAAAGACCCGCTGGCTGCCCTCCAGGACTGGAGTACCTGACCCAGATTGATCAACTTCTTGTACATCAGAAAGTTGAGCTGGCAGAAGTGATATTGGGCTGGGAGACCAATAATAAGTACACAGTGACGAACAGTATGGGGCAACAGGTGTTCTTTGTGGCTGAGGAGAACGACTGCTGTAATAGACAGTTCTGTGGGCCGCTGCGTTCGTTCGTCCTCCACGTTCAGGATAACATGGGACAGGAAGTGATGACACTCACTCGTCCTTTGAAGTGCGGAAGCTGCTGTTTTCCCTGCTGCCTGCAAGAGCTTGAAATCCAGTCTCCACCTGGCAACCCGATTGGATACGTGATCCAGAATTGGCATCCTTTCGTTCCCAAGTATACCGTCCAGAATGAGAAAAAGGAAGCCGTTCTGAAGATCGTGGGGCCGTTCTGTTCATGCAGATGTTGCGCTGATGTGAACTTTGATgttttGTCTGTGGACGAATCAACAAAGGTTGGCCGAATCGCTAAACAATGGACAGGTCTGGTGAGGGAAGCTTTCACCGATGCAGACAATTTTGGAATCTCCTTTCCTATGGATCTGGACGTGAAGATCAAAGCTGCTCTTTTCGGAGCGTGTTTTCTTATAGACTTCATGTTCTtcgaacacaataaataatttattttctggaTGTCATTGTTTCAGCATTTCGAACGTATGAACTCCTCCTCAGCTCTCAACATGTTAACCGTGGATTCAAATGTGGATCACTCAgctaaattttatattatatcatacatATTATTATGTGCAGGTGTATTCTTTCACTACTGTTCCTGAGCCACCACTAGGTGACAGCAGTTCCCTTTATCATAATGTTGACATACTCTTTGTATTACCAAAGTACCTGCTCTAAAAGCTTCGCCAAAAACGAAATGCaaactattaaaattatttttttagtacaaTATAAGCAAAATGTTAACCGCTTAATTTTGCCCAATTTGTTTGTGTGCTTATAATAAACTGTAGAATAAAGTGTTATACATCAA

Function

symbol description
si:ch211-71m22.1 Predicted to enable phospholipid scramblase activity. Acts upstream of or within cilium assembly. Located in cytoplasm. Orthologous to human PLSCR1 (phospholipid scramblase 1); PLSCR2 (phospholipid scramblase 2); and PLSCR5 (phospholipid scramblase family member 5).

NR:

description
PREDICTED: phospholipid scramblase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224725.1 True 1460 mRNA 0.44 10 1062736 1067442
XM_043224735.1 False 1251 mRNA 0.44 10 1062189 1067442

Neighbor

gene id symbol gene type direction distance location
LOC122357578 LOC107681832,LOC107709017,LOC108437507,LOC103030036,LOC107599862 coding upstream 915 1052080 ~ 1061274 (+)
LOC122324991 NA coding upstream 22585 1035675 ~ 1039604 (+)
LOC122357034 LOC107599864,LOC107681686,LOC107708940 coding upstream 29200 1027293 ~ 1032989 (+)
si:ch211-71m22.3 NA coding upstream 37426 1019747 ~ 1024763 (+)
miga1 miga1,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 coding upstream 55585 995837 ~ 1006604 (+)
pls1 pls1,LOC107722705,LOC107656864,LOC107565818,LOC107709028,LOC107681752,LOC108437523 coding downstream 180776 1248218 ~ 1263078 (+)
ephb3a ephb3a,LOC107681809,LOC107599837,LOC107722542,LOC107708817,LOC107656865,LOC108437521,LOC108267069,LOC105889460,LOC102226142 coding downstream 212395 1279837 ~ 1308819 (+)
kcnmb3 LOC107708981,LOC107599858,LOC107681773 coding downstream 273301 1340743 ~ 1345013 (+)
tbl1xr1b tbl1xr1b,LOC107656866,LOC108437519,LOC107568629,LOC103032574,LOC108267995,LOC107722285,LOC106530177,LOC105889501 coding downstream 288798 1356240 ~ 1371916 (+)
b3gnt5b LOC107593805,LOC107709072,LOC107656860,LOC107681747,LOC107568627,LOC107722519 coding downstream 307616 1375058 ~ 1381470 (+)
G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding upstream 279444 680687 ~ 782745 (+)
G8173 NA non-coding upstream 390626 668304 ~ 671563 (+)
LOC122328698 NA non-coding upstream 417263 643034 ~ 644926 (+)
LOC122325219 NA non-coding upstream 427423 634151 ~ 634766 (+)
G8213 gpt2l,LOC107599855,LOC107691046 non-coding upstream 477841 583362 ~ 584348 (+)
G8394 NA non-coding downstream 112688 1180130 ~ 1186032 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding downstream 129985 1197427 ~ 1203014 (+)
G8451 NA non-coding downstream 314677 1382119 ~ 1382323 (+)
G8449 NA non-coding downstream 316450 1383892 ~ 1385986 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding downstream 340209 1407651 ~ 1425295 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 233784 799932 ~ 828405 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 604444 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 816825 241451 ~ 245364 (+)
G8167 NA other upstream 838822 200092 ~ 223367 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 330082 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 477331 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 835625 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 866070 1933512 ~ 1936759 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 1111324 2178766 ~ 2191448 (+)

Expression


Co-expression Network