cope (cope,LOC107709006,LOC107690966,LOC107681743)


Basic Information

Item Value
gene id cope
gene name cope,LOC107709006,LOC107690966,LOC107681743
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 693217 ~ 696664 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224778.1
CGAGCCGTTCTGGTTTACGTGGCCAAAGTGACGTCGGCGAAGTTGACGTTTCGCGAACATGGCGTCGCAGCAGAGCGAGGTAGACGAGCTGTTCGACGTGAAAAACGCGTTTTATATCGGCAGCTACCAACACTGCATTAACGAAGCCCAAAAAGTAAAGACGTCAAATCCAGAAAAGGATATTGAGAAGAACATTTTTCTGTACAGAGCATATATCGCTCAGaGGAAGTATGGTGTGGTACTGGATGATATAAAGCCCAGCTCCTCCGAGGAACTGCAGGCTGTCAGGATGTTTGCAGAGTACATGTCCAATGAAGGCAAGAGGGATACAATAGTGACAGAACTGGACAAAAAGATGGCCAAGAGCGTTGATGTTTCCAACACCACCTTTCTGCTGATGGCGGCTTCCATCTACCTGCACGAGATGAACACGGATGCTGCGTTACGCACCTTGCACCAGGGGGATAGTCTGGAGTGCATGGCCATGACTGTTCAGATACTTCTAAAGCTGGACCGAGTTGATATGGCAagAAAGGAATTAAAGAAGATGCAAGACCAAGATGAAGATGCCACTCTGACCCAGCTTGCTACTGCTTGGGTCAACCTTGCAATTGGGGGAGAGAAATTGCAGGATGCGTTCTATATCTTCCAGGAAATGTCAGACAAGTACTCGCCCACACTGCTGCTCCTGAACGGTCAGGCTGCAAGTCACATGGCTCAGAATAAGTGGGATGAGGCTGAGTCGGTACTACAGGATGCTCTGGACAAAGACAGCAGCCACCCGGAGACACTCATCAACCTCATTGTGTTGACACAGCATTTGGGCAAACCTCCTGAGGTGACAAATCGATATTTGTCTCAACTGAAAGATGCACATAAGTCACATCCGTTTATTAAAGAATATCTCGCTAAGGAGAATGAATTTGACAGGCTTGCCATGCAGTACGCCCCCAGCGCCTGAAAGAACTACGCAGTTTTAATTTATGTCTCCGCACCGCAATATTATTTCTCCTCTATACACCTTTTTAATGCCTTTAAACAAAGTGATATTCAACAGGTtgagatttttgtttgcttctTTTTGAAGTCCAACAGCTCTACAAACATTCCCGTTTGATggttaaataaacatgtttatcatA
>XM_043224784.1
GTGGCCAAAGTGACGTCGGCGAAGTTGACGTTTCGCGAACATGGCGTCGCAGCAGAGCGAGGTAGACGAGCTGTTCGACGTGAAAAACGCGTTTTATATCGGCAGCTACCAACACTGCATTAACGAAGCCCAAAAAGTAAAGaGGAAGTATGGTGTGGTACTGGATGATATAAAGCCCAGCTCCTCCGAGGAACTGCAGGCTGTCAGGATGTTTGCAGAGTACATGTCCAATGAAGGCAAGAGGGATACAATAGTGACAGAACTGGACAAAAAGATGGCCAAGAGCGTTGATGTTTCCAACACCACCTTTCTGCTGATGGCGGCTTCCATCTACCTGCACGAGATGAACACGGATGCTGCGTTACGCACCTTGCACCAGGGGGATAGTCTGGAGTGCATGGCCATGACTGTTCAGATACTTCTAAAGCTGGACCGAGTTGATATGGCAagAAAGGAATTAAAGAAGATGCAAGACCAAGATGAAGATGCCACTCTGACCCAGCTTGCTACTGCTTGGGTCAACCTTGCAATTGGGGGAGAGAAATTGCAGGATGCGTTCTATATCTTCCAGGAAATGTCAGACAAGTACTCGCCCACACTGCTGCTCCTGAACGGTCAGGCTGCAAGTCACATGGCTCAGAATAAGTGGGATGAGGCTGAGTCGGTACTACAGGATGCTCTGGACAAAGACAGCAGCCACCCGGAGACACTCATCAACCTCATTGTGTTGACACAGCATTTGGGCAAACCTCCTGAGGTGACAAATCGATATTTGTCTCAACTGAAAGATGCACATAAGTCACATCCGTTTATTAAAGAATATCTCGCTAAGGAGAATGAATTTGACAGGCTTGCCATGCAGTACGCCCCCAGCGCCTGAAAGAACTACGCAGTTTTAATTTATGTCTCCGCACCGCAATATTATTTCTCCTCTATACACCTTTTTAATGCCTTTAAACAAAGTGATATTCAACAGGTtgagatttttgtttgcttctTTTTGAAGTCCAACAGCTCTACAAACATTCCCGTTTGATggttaaataaacatgtttatcatA

Function

symbol description
cope Predicted to enable structural molecule activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPE (COPI coat complex subunit epsilon).

NR:

description
coatomer subunit epsilon

GO:

id name namespace
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K17268 COPE; coatomer subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224778.1 True 1142 mRNA 0.46 10 693217 696664
XM_043224784.1 False 1061 mRNA 0.46 9 693235 696664

Neighbor

gene id symbol gene type direction distance location
slc25a24l slc25a24l,LOC107708925,LOC107681683,LOC107751862,LOC107566460,LOC107599866 coding upstream 379 685223 ~ 692838 (+)
txndc12 txndc12,LOC107708672,LOC107681819,LOC107690994,LOC107599851,LOC107566463,LOC107739415 coding upstream 25866 663791 ~ 667351 (+)
zmp:0000001127 NA coding upstream 31217 658757 ~ 662000 (+)
zgc:153615 zgc:153615,LOC107747506,LOC107691014,LOC107708656,LOC107599852,LOC108430722,LOC103026425 coding upstream 38436 648984 ~ 654781 (+)
LOC122325155 selt1a,selenot,LOC107681817,LOC107708642,LOC106599070 coding upstream 84050 605086 ~ 609167 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding downstream 9887 706551 ~ 776800 (+)
ak5 ak5,LOC107681791,LOC107599844,LOC107703241 coding downstream 179094 875758 ~ 952394 (+)
miga1 miga1,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 coding downstream 299173 995837 ~ 1006604 (+)
si:ch211-71m22.3 NA coding downstream 323083 1019747 ~ 1024763 (+)
LOC122357034 LOC107599864,LOC107681686,LOC107708940 coding downstream 330629 1027293 ~ 1032989 (+)
G8173 NA non-coding upstream 21654 668304 ~ 671563 (+)
LOC122328698 NA non-coding upstream 48291 643034 ~ 644926 (+)
LOC122325219 NA non-coding upstream 58451 634151 ~ 634766 (+)
G8151 NA non-coding upstream 89272 571029 ~ 603945 (+)
G8394 NA non-coding downstream 483466 1180130 ~ 1186032 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding downstream 500763 1197427 ~ 1203014 (+)
G8451 NA non-coding downstream 685455 1382119 ~ 1382323 (+)
G8449 NA non-coding downstream 687228 1383892 ~ 1385986 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding downstream 710987 1407651 ~ 1425295 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 235472 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 447853 241451 ~ 245364 (+)
G8167 NA other upstream 469850 200092 ~ 223367 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other downstream 103268 799932 ~ 828405 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 700860 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 848109 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 1206403 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 1236848 1933512 ~ 1936759 (+)

Expression


Co-expression Network