ebna1bp2 (ebna1bp2,LOC107722608,LOC107580944)


Basic Information

Item Value
gene id ebna1bp2
gene name ebna1bp2,LOC107722608,LOC107580944
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2072770 ~ 2076037 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253397.1
TTCCGTCAGGGCTTCGATTATCACCCACACTCTCGAGAAGCGCTGCCGCGCGCACGTGAAGCTAGGGGATGTTGTGAACTCGTctgttactgtatttattttccaaatttcCGTTCTGTATAATTTTACAATGGTAGAAGTAGACGAGGATCCCCAGTTGGGGTTCGAGTCCGAGGAAGACGACGACGAATTATCAGACGGCGAGCTGCAAGAAGCTTTCGCCAAAGGCTTGCTCAAACCTGGACTCAATGTTCCTCTGCATGAGCCGAAGAAGGCCATCAACAACGTGGAGGGTCTTAAGAAATGCCTGGCTGAGTTTAAGAAGAATCTGCCATGGGCTGAAAGGCTGGACCTCACTACCTACCCAGCTGTTGACATCGCTGCAAAAGCAGAGGGCAGAGTGCAGCAACCAGAAGGCAGTGAAGATGTGAACGCAGAGGATGACTTTCAGAGGGAGATgtatttCTACCGGCAGGCCCAAGCGACTGTTTTAGCGGCGCTGCCAAAACTGCGTAAGTTCAAGATCCCTACCAAGAGACCCGAGGATTACTTCGCGGAGATGGCCAAGACCGATCAGCACATGCAGAAGATTAGGAAAAAGCTCCTTCTGAAGCAAGCCGCAATGGAGAAGTCAGAAAAGGCCAAGAAGCTGAGAGAACAGAGGAAGTACGGCAAAAAGGTTCAAACACAGGTGATTCagaacagacagaaacagaagaaagcAATGCTCTCGGCTGTAAAGAAGTATCAGAAAGGAATGACGGATAAGCTGGAGTTCTCTGAAGGAGATCAAGATCAGAGACCGAAAGGATCAGctacaaaaaagcaaataaacaacaaaggtccAAATTCTAAGAGGAAATACAAGGATAAGAAGTTTGGCTTTGGGGGAAAGAAGAAGGGCAGCAAATGGAACAACAAAGAGAGCCATGACGACGTTTCTGGGTTCAGGGCCAAAGTGGCTCATGGGAAGGGCGGGAAAAATTTCGGCAAAAGAGGCAAGACGAAtaaacgGCCAGGGAAGGAGACAAGGAAGAAAATGAAGACACGCAAATGAGCTGTATCTTCCCATTAGTACCTCTCCCTCAAATGGATTGTGCcattaaaaagacttttttatcTATATTTCCTATTACTTGGGTGAAGAACGCCTTTGTTCTTTTTCTGGCAAACACTTTTGTATTGTACAAGACTTGCCCGCATTTCAGaagattaattttttatgtttgtattaaGCAGACCAATGTTAGCACGCCACCAATAAAACCcagtttaaaaatta

Function

symbol description
ebna1bp2 Predicted to be involved in rRNA processing and ribosomal large subunit biogenesis. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nuclear periphery and nucleolus. Orthologous to human EBNA1BP2 (EBNA1 binding protein 2).

NR:

description
probable rRNA-processing protein EBP2

GO: NA

KEGG:

id description
K14823 EBP2, EBNA1BP2; rRNA-processing protein EBP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253397.1 True 1282 mRNA 0.46 9 2072770 2076037

Neighbor

gene id symbol gene type direction distance location
LOC122357653 LOC107719275 coding upstream 20644 2038907 ~ 2052126 (+)
scp2a scp2,scp2a coding upstream 55739 2005196 ~ 2017031 (+)
czib si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC107681739,LOC107719286,LOC107671679,LOC107722617,LOC103022465 coding upstream 68357 2002091 ~ 2004413 (+)
uck2b uck2b,LOC107593786,LOC107719266,LOC107681732,LOC107560789,LOC107722061 coding upstream 71335 1997438 ~ 2001435 (+)
zte38 zte38,LOC107681728,LOC107593889,LOC107719267,LOC107722624 coding upstream 81286 1987329 ~ 1991484 (+)
LOC122326519 lrp8,LOC107681710,LOC107671705,LOC107719273,LOC107559340 coding downstream 7638 2083675 ~ 2156239 (+)
LOC122358154 LOC107681836,LOC107719284 coding downstream 97335 2173372 ~ 2178165 (+)
LOC122358163 leprot,LOC107754776,LOC107719262,LOC107681772,LOC107671671 coding downstream 129157 2205194 ~ 2209223 (+)
pde4bb pde4bb,LOC107719260,LOC107681771,LOC107593782,LOC107671696,LOC107559365,LOC108430746 coding downstream 137066 2213103 ~ 2265525 (+)
LOC122326129 tctex1d1,LOC107709344,LOC107719283 coding downstream 215426 2291463 ~ 2293495 (+)
G8670 tmem125b,LOC107681734,LOC107719290,LOC107593887 non-coding upstream 17040 2053311 ~ 2055730 (+)
LOC122355709 LOC107593853,LOC107719278,LOC107681699 non-coding upstream 124408 1947128 ~ 1948362 (+)
LOC122362698 NA non-coding upstream 143203 1925860 ~ 1929567 (+)
G8586 NA non-coding upstream 150547 1919412 ~ 1922223 (+)
G8585 LOC107701323,LOC107593893,LOC107719279,LOC107560771,LOC107722646 non-coding upstream 153457 1918706 ~ 1919313 (+)
G8691 NA non-coding downstream 94559 2170596 ~ 2170820 (+)
G8700 NA non-coding downstream 135716 2211753 ~ 2212073 (+)
G8701 NA non-coding downstream 136221 2212258 ~ 2212609 (+)
G8706 NA non-coding downstream 145671 2221708 ~ 2222074 (+)
G8707 NA non-coding downstream 150868 2226905 ~ 2227251 (+)
arl14 arl14,LOC107722413,LOC107719289 other upstream 136011 1933512 ~ 1936759 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other upstream 162091 1903067 ~ 1910679 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other upstream 512996 1544773 ~ 1559774 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other upstream 664049 1397524 ~ 1408721 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 1244365 799932 ~ 828405 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 102729 2178766 ~ 2191448 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other downstream 194642 2270679 ~ 2288216 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other downstream 322917 2398954 ~ 2401745 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other downstream 330705 2406742 ~ 2419955 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other downstream 472029 2548066 ~ 2555321 (+)

Expression


Co-expression Network