LOC122355741 (LOC107661905,LOC107711709,LOC107671722,LOC107727480,LOC107558019)


Basic Information

Item Value
gene id LOC122355741
gene name LOC107661905,LOC107711709,LOC107671722,LOC107727480,LOC107558019
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3194012 ~ 3197447 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254309.1
CATTTATCTGCAACAGGACTGAAGAACAGCAAACATCTCATTGTCCCAGAGAAAGGTTTCCACGTATTTTGACACCGTTAACTCTGGCTTCGTTGGATTTTTCAAGCTTCACAAAAAGATCATGGAATTGAAGCTGATCAAGCACCGATACAACAGGGTCTCCCTTTTCTTcattgtgcttgtgtttgtggtAGGCTTCGTAATTCAAGGTCAGTGgttttttccaaacaaaatccaaaatccTAACAAGTTGAGGGAGCTTCAAGAGTTCCTTACTCCACTAACATCAAATGAAACTGCCGTCTCAGCTCCAGATGAAAGTTTGCAGCAGGGATCGGAAAACTCCTTACTTTTGAACATCGGTTTGAGGGAAGAGATTACAGCAGCGAGGATACTTAGAATTGAGCCTTACATGTACATCCTCAACGAGCCGAACGCATGTCTGTTGCAAGACCCTTTCTTAGTGCTTTTGATTGCGGTTGAGCCCATAAAAACGGACGCCAGGGATGCCATCAGGAAAGCGTGGGCTAATGAAAGCGTGGCTGGAGGTTTGGGTTTCGTTCGTCTTTTTTTCATAGGTGTAAATAAAGACACCCGAATAGACGGCGGCAAACTGCAGCGCACAATAGAGCAAGAAAGTCATCGATATCATGACATCATCCAGCAAGATTACAGGGACACCTACAACAACCTGACCCTGAAAACGCTGATGGGGATGTACTGGATCACAAAATACTGTCCCGAGGCCAAATACGTCATGAAGACAGACAGTGACATGTTTGTCAACACCGAATACCTCATAGAAAAACTCCTAAAACCCAAAGAGCAACCAgcacagaaatattttacaggACATCTTATGCCAGACATGTCCCCAATTCGAAACCAAGAGAGTAAATGGTACATGCCCCAAGAAGTGTACCCTGGTGGGCGATACCCCACCTTTTGCTCTGGGACTGGGTACGTCTTCTCAGGAGATGTGGCCCAAAGCATATACGTGGTATCTCTGACCATACCTAGAGTGCATTTAGAAGATGTTTATGTGGGTATGTGTCTAGCTAAGCTGAAGATAGAGCCAACACCACCACCAAATGATCAGCTGTTCAATCACTGGCGAGTGCCCTACTCGAGCTGTAGATACAGCAACCTGATCACCTCTCATTGGTTTCAACCCAATGAGATCATCCAGTTCTGGCAACACCTGCAGAGCAACAAGCACAACCCCTGCCAAACGACTGGGTAAAaggttcatctttggaacaaaataaatatttttgatcatttgacagctattaaattacaaaaacaaacaacaaaaaaatttcctTATTCAGCAAATCTTCTCATTTCGTCTACTGTCATGATGGAAAGTACCATGACATATCTGTGCTTTCCTCTGCACATAAACAAGGTGCAGTGCATGTATGTTCTACAACAGCTGCACCACAAAATTCAAATGGTCAGGATAAAACAggtcataaataaaacacagtgacAAGACTTGTATTATtacaaaagaaaattctgttttaaataaatgcatttataagaTGTTCTATTCATCATtgtccttaaaaaaatattatgaagcagcacaatttTCGACATTGATCATtcgaaatgtttcttaagcagtaaattagcatattagaaggatttctgaaggatcatgtgacactgaagacagagCCTAGTGATTCCACATAGAGAGAGAAGCGGTCcaagaactgagccctgaggcactccattAGTTAGCTGTTGTGACTTTAGACACCTCACCTCTTCAAGATACCTTGAAGGATCTACATGAGTTAAGACTAAAACCACTGGAATGCGGTTCCTGAGGTGCACTTTTGCCAATAGTTTTGACCGAAAGATCTGTTGGATCTCAACAAAAGCAGCTGGCTGTTCTAGCAAGATAAGTATAGAAGATTTGGAGTCTGCTCTTGCCAGTCAATTTGAATGGCAGAACAAGAAACTTGCCACAGAAATGCTCAAATACTCATCTCCCCAGCATCCTACAGAATGGAAGCTGGGCTTCAGAGGACAAGAAGTAGTGAGAATTGGAAGAGACCAAAAAGTTGAAGACCAAGGCGGGTCACTGAAGTGAGGACTTTTGAAGTCTGTGAGGGTCACAACTCTTGTGGGTCAAatgaaaggagagagagagttttatgGCTCTTTGTCTCCAAGCATGGTAATTTGCATATTGGTAGATTATAAACTAACTCAACTCTATGTTGCATAGATATCGTGTAATATACACTGTACTGGATGTAATTATATGATAACTAACAAACTGATAAGACTTTGAAACGTTTTTGTCTTAAATCAATATGTTTTATCTCCACACTTATTTTCTTTGGTGAAATTTTGTATAATACGTGCCATGAAATATCAGTCTAGAACTTGCCGGTTTCTATACTGAAGGTTTGCTTACAAAGATTTCAACTTGGATCAAGGTTTtgtgtataattatttacttttgtggcaAGAAGCCATGTAATAAGTGGGATAATGTACAACCAGCAGGTTGTTAGCTGCGTTATAAACCTCCTGGATGTACATTGTCCTTAACATAAAATGgtatataatactaaaaaaaaaa

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254309.1 True 2608 mRNA 0.40 2 3194012 3197447

Neighbor

gene id symbol gene type direction distance location
kcnt2 LOC107661911,LOC107727504,LOC107593757 coding upstream 3424 3170451 ~ 3190588 (+)
dpp6b dpp6b,LOC107658692,LOC107711712,LOC107671710,LOC107727490,LOC107558008 coding upstream 129410 2955709 ~ 3064602 (+)
bcl2b bcl2b,LOC107727540,LOC107593762,LOC107671740,LOC107711715,LOC107559382 coding upstream 413334 2742715 ~ 2780678 (+)
vps4b vps4b,LOC107710065,LOC107681797,LOC107727524,LOC107671729 coding upstream 464519 2717573 ~ 2729493 (+)
LOC122323799 LOC107681838,LOC107709342,LOC107593839,LOC108430687,LOC103043726,LOC105899208 coding upstream 492040 2695421 ~ 2701972 (+)
LOC122362414 LOC107727480 coding downstream 11705 3209152 ~ 3213666 (+)
abhd3 abhd3,LOC107727531,LOC107671728,LOC107711708,LOC107661904 coding downstream 37787 3235234 ~ 3253124 (+)
LOC122355375 LOC107727511,LOC107593880,LOC107711692,LOC107671684,LOC107661913 coding downstream 108815 3306262 ~ 3308298 (+)
LOC122324044 cyp8b1,cyp8b3,LOC107727542,LOC107661909,LOC107558014,LOC107593879,LOC107711691,LOC107671665 coding downstream 113489 3310936 ~ 3312851 (+)
gjc2 LOC107661908,LOC107727543,LOC107711690,LOC107671673,LOC107558016,LOC107593878 coding downstream 115554 3313001 ~ 3333005 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 72959 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 281225 2912291 ~ 2912787 (+)
G8794 NA non-coding upstream 321263 2819072 ~ 2872749 (+)
G8764 NA non-coding upstream 580908 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 584493 2511622 ~ 2609519 (+)
G9130 ipp non-coding downstream 325823 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 366261 3563708 ~ 3564239 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding downstream 374990 3572437 ~ 3573075 (+)
G9232 NA non-coding downstream 583093 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 586892 3784339 ~ 3784667 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 29189 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 454105 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 504385 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 557426 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 575563 2618316 ~ 2618449 (+)
G9154 rock1,LOC107671690 other downstream 418035 3615482 ~ 3617043 (+)
G9173 NA other downstream 478978 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 558724 3756171 ~ 3790339 (+)
G9361 NA other downstream 1024792 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 1366450 4563897 ~ 4570094 (+)

Expression


Co-expression Network