txndc12 (txndc12,LOC107708672,LOC107681819,LOC107690994,LOC107599851,LOC107566463,LOC107739415)


Basic Information

Item Value
gene id txndc12
gene name txndc12,LOC107708672,LOC107681819,LOC107690994,LOC107599851,LOC107566463,LOC107739415
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 663791 ~ 667351 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254375.1
AGGACCCCGCGGCGTCTGTCCGTCACATCCAGGCAGCTCAAGGCTAACGACCGTCGGAATGAAAATGCCGTCGTCTTTATTCAACATTGCCCTGGTTTCTTTTATACTGGTTTTTATTGCGTCACATTTCGGAGAGGTGTTAGGCGATGGCAAAGGACGAgGATTTGGGGAACACATTAACTGGCGGAGCCTTGAAGATGGGAAGATGGAGGCAGAAGCAAGTGGACTCCCTATGATGGTCATTATTCACAAGACTTGGTGTGGAGCCTGTAAAGctttaaagCCCAAGTTTGCTGAATCAAAGGACATCTCTGAGCTGGCTCACAACTTTATCATGGTTAACCTGGAGGATGAAGAGGAGCCAAAAGATGAGACCTTCAGCCCAGATGGAGGTTACATTCCAAGAATACTTTTCCTTGATCCCACTGGTAAAGTCCACTCTGAGATCACGAATAAGAATGGGAACCCCAACTACAAGTACTTCTACAGCAATGCAGATCAAGTTGTTACCAGCATGAAGGAAGCTCAAGACAAGCTGACCGGAGATGCCTTCAGGACGGCTCACATCGGGGATGAACTCTAAGCCAGAACACTGCTTCACCTTGCTGGTCACATTAGATCCATCCATATATTCATCTCCAACCTCAGTTCCTAGtgtcatttcatttaatctGCTATAGCACAAGACAAGCTTCAAAGATGAAggatttttaatgcatttttaatttacatttcaaagtATCGCAGCATGCGGTAGATTGGCTTATTACTTTGAGAACCAAAGCATACTTACTGTTCGTGTCACACAAAGGGTgctaaaaaggtttttttccgTCTTACATTTCAGAAATTCAAAACTAATTgatcatttaattttgaaaacaatCGCCCATCTTGACTGCATTCTTAAGGCActccgtgttttttttttttaagaaacatgccAGTAAGGCAATTCTCATGTGCTTCCAAGCCATATCTTACAAGCTGTGGTAAAACTGATCCAGTTACCCAGTCGCTTTTATGAAGAGCTTTATAGTCCCCAAACCGTTCCCACCTAAAAACTACGTATGTTTTCATGACTGTACCAGTTTTATGTTAAAAGTTAGAAATGTTGACAGTATCTCTTAAACTTGCCAAGTTTTAGTTCTCGATATATGGAGTTACCTTTCATTTTTACTGTTGACAATACCTGTGAATTAATGCCTGTAATgtggacactttttttttttctctctctgttggGATTGAAAGGAAATTGTTCGTCTTCgccatactgtattttttaccaATATGTAAAATGAGGCTACAAATAAAGTTGATTATAAAATA

Function

symbol description
txndc12 Enables protein-disulfide reductase (NAD(P)) activity. Acts upstream of or within DNA damage response, detection of DNA damage and detoxification of hydrogen peroxide. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including brain; digestive system; immune system; pectoral fin bud; and ventricular zone. Orthologous to human TXNDC12 (thioredoxin domain containing 12).

NR:

description
thioredoxin domain-containing protein 12

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG:

id description
K05360 TXNDC12; protein-disulfide reductase (glutathione)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254375.1 True 1332 mRNA 0.41 7 663791 667351

Neighbor

gene id symbol gene type direction distance location
zmp:0000001127 NA coding upstream 1791 658757 ~ 662000 (+)
zgc:153615 zgc:153615,LOC107747506,LOC107691014,LOC107708656,LOC107599852,LOC108430722,LOC103026425 coding upstream 9010 648984 ~ 654781 (+)
LOC122325155 selt1a,selenot,LOC107681817,LOC107708642,LOC106599070 coding upstream 54624 605086 ~ 609167 (+)
LOC122325106 pter,LOC107681810,LOC107599857 coding upstream 98801 559979 ~ 564990 (+)
LOC122325174 NA coding upstream 423395 238742 ~ 240396 (+)
slc25a24l slc25a24l,LOC107708925,LOC107681683,LOC107751862,LOC107566460,LOC107599866 coding downstream 17872 685223 ~ 692838 (+)
cope cope,LOC107709006,LOC107690966,LOC107681743 coding downstream 25866 693217 ~ 696664 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding downstream 39200 706551 ~ 776800 (+)
ak5 ak5,LOC107681791,LOC107599844,LOC107703241 coding downstream 208407 875758 ~ 952394 (+)
miga1 miga1,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 coding downstream 328486 995837 ~ 1006604 (+)
LOC122328698 NA non-coding upstream 18865 643034 ~ 644926 (+)
LOC122325219 NA non-coding upstream 29025 634151 ~ 634766 (+)
G8151 NA non-coding upstream 59846 571029 ~ 603945 (+)
G8213 gpt2l,LOC107599855,LOC107691046 non-coding upstream 79443 583362 ~ 584348 (+)
G8209 c1ql3b,LOC107708591,LOC107747511,LOC107599856,LOC107681760,LOC107566459,LOC107691085,LOC107691073 non-coding upstream 96877 565896 ~ 566914 (+)
G8173 NA non-coding downstream 953 668304 ~ 671563 (+)
G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding downstream 13336 680687 ~ 782745 (+)
G8394 NA non-coding downstream 512779 1180130 ~ 1186032 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding downstream 530076 1197427 ~ 1203014 (+)
G8451 NA non-coding downstream 714768 1382119 ~ 1382323 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 206046 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 418427 241451 ~ 245364 (+)
G8167 NA other upstream 440424 200092 ~ 223367 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other downstream 132581 799932 ~ 828405 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 730173 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 877422 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 1235716 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 1266161 1933512 ~ 1936759 (+)

Expression


Co-expression Network