sec22ba (sec22ba,sec22b,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393)


Basic Information

Item Value
gene id sec22ba
gene name sec22ba,sec22b,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2544560 ~ 2548852 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254778.1
GAGACGCAGCATGTCCAGCTGGAGCCTCGCATAAAGGGCCCTTGTGTGGCATCAAAAGAGCTGCGAGCGGTGTCAGCCAATCCAGCGAGGCTGAACTAATCGCTCTCAGAGACCGAAGTTGAAGAGTAAAGAGAACAGGCGAAATGGTGCTGCTGACGATGATTGTTCGCGTCGCCGACAGCCTGCCGCTGGCTGCATCCATGCAAGAAGACGAGCAGTCGGGGCGAGACTTACAGAAGTACCAGAATCAAGCCAAGCAGCTCTGCAGGAAACTCACCGATCAGAGTCCTGCGCGCTGCACTCTGGAGGCGGGAGCCATGGCCTTCCACTACGTCATTGAGAAAGGAGTGTGTTACTTGGTCATTTGTGAAGCGGGATTTCCCAAGAAACTGGCGTTCGCCTATCTGGAGGATCTGGAGGGAGAATTCAGCGAACAGTACGGGACAAAAGTCCCTTCAGTCTCACGGCCGTACTCTTTTATCGAATTTGACACGTACATTCAGAAAACCAAAAAGTCTTACATCGACAGCAGAGCACGAAGAAACCTGGGCAGCATCAATACAGAGTTACACGACGTGCAAAGGATCATGGTCGCCAACATAGAGGAAGTGCTCCAGCGCGGAGAGGCGCTATCCGCCCTGGATTCCAAAGCTAGCAATCTGTCCAGCCTGTCCAAGAAGTACCGCAGCGACGCCAAGTACCTCAACACCCGCTCCACCTACGCCAAAGTGGCGGCCGGCGCCGTGATCTTCATCACCCTCGTCGTCTACGTGCGCTTCTGGTGGCTGTGAATGCGCCTCCAATCCGAGCGGAAACTCTCAGGGCCTcgctcgcaaaaaaaaaaaaccccggtTTAGACGGCAGAGTCTGTCCTGGCCTTAAGACTGTGTCTGTCTGAGACACCGAACGTAGCTGTCCGTGAGGTTTCGTCGAGGTCGTCTTTCTACAGTTGTGCCCTGCTTTATTTAAAACGGAGATAGCGATGCGCTCAGGATGTTCATAACGGAGCTATGCAAAGTATACGCGGCGTTTATACGAAATCGCATCTGTGGCTGGAGGGGAGAGATCAATGCGTCTTTGTTTGGCGCCCACTATGTCAAATGTAACTTCTATTTGTGAATACGTCAAGGTGCTTTTGTAAGAACTAAGTAAATTCAGAGTAAATAAG
>XM_043254784.1
CAATAATCGGAACCTTTGGAATGCGAAAGCCGGAAAGAATTTGAGACCGAAGTTGAAGAGTAAAGAGAACAGGCGAAATGGTGCTGCTGACGATGATTGTTCGCGTCGCCGACAGCCTGCCGCTGGCTGCATCCATGCAAGAAGACGAGCAGTCGGGGCGAGACTTACAGAAGTACCAGAATCAAGCCAAGCAGCTCTGCAGGAAACTCACCGATCAGAGTCCTGCGCGCTGCACTCTGGAGGCGGGAGCCATGGCCTTCCACTACGTCATTGAGAAAGGAGTGTGTTACTTGGTCATTTGTGAAGCGGGATTTCCCAAGAAACTGGCGTTCGCCTATCTGGAGGATCTGGAGGGAGAATTCAGCGAACAGTACGGGACAAAAGTCCCTTCAGTCTCACGGCCGTACTCTTTTATCGAATTTGACACGTACATTCAGAAAACCAAAAAGTCTTACATCGACAGCAGAGCACGAAGAAACCTGGGCAGCATCAATACAGAGTTACACGACGTGCAAAGGATCATGGTCGCCAACATAGAGGAAGTGCTCCAGCGCGGAGAGGCGCTATCCGCCCTGGATTCCAAAGCTAGCAATCTGTCCAGCCTGTCCAAGAAGTACCGCAGCGACGCCAAGTACCTCAACACCCGCTCCACCTACGCCAAAGTGGCGGCCGGCGCCGTGATCTTCATCACCCTCGTCGTCTACGTGCGCTTCTGGTGGCTGTGAATGCGCCTCCAATCCGAGCGGAAACTCTCAGGGCCTcgctcgcaaaaaaaaaaaaccccggtTTAGACGGCAGAGTCTGTCCTGGCCTTAAGACTGTGTCTGTCTGAGACACCGAACGTAGCTGTCCGTGAGGTTTCGTCGAGGTCGTCTTTCTACAGTTGTGCCCTGCTTTATTTAAAACGGAGATAGCGATGCGCTCAGGATGTTCATAACGGAGCTATGCAAAGTATACGCGGCGTTTATACGAAATCGCATCTGTGGCTGGAGGGGAGAGATCAATGCGTCTTTGTTTGGCGCCCACTATGTCAAATGTAACTTCTATTTGTGAATACGTCAAGGTGCTTTTGTAAGAACTAAGTAAATTCAGAGTAAATAAG

Function

symbol description
sec22ba Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum; and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum-Golgi intermediate compartment membrane; and melanosome. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in bounding membrane of organelle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in hatching gland; notochord; and polster. Orthologous to human SEC22B (SEC22 homolog B, vesicle trafficking protein).
sec22b Predicted to enable SNAP receptor activity. Involved in negative regulation of autophagosome assembly and positive regulation of protein catabolic process. Located in ER to Golgi transport vesicle membrane and endoplasmic reticulum-Golgi intermediate compartment.

NR:

description
PREDICTED: vesicle-trafficking protein SEC22b-like

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254778.1 True 1168 mRNA 0.52 6 2544560 2548852
XM_043254784.1 False 1102 mRNA 0.51 6 2544560 2547425

Neighbor

gene id symbol gene type direction distance location
LOC122358747 arf1,LOC107727518,LOC103038497,LOC107671731 coding downstream 24899 2517715 ~ 2519661 (-)
LOC122358726 tctex1d1,LOC107709344,LOC107719283 coding downstream 78639 2461309 ~ 2465921 (-)
LOC122358118 LOC107681770,LOC107754775,LOC107671698,LOC107559364,LOC107593785,LOC107719272 coding downstream 340178 2189510 ~ 2204382 (-)
LOC122355393 LOC107681824,LOC107719263,LOC107722033,LOC107671706 coding downstream 375239 2158449 ~ 2169321 (-)
LOC122357078 cfap57 coding downstream 474033 2056567 ~ 2070527 (-)
tsen15 tsen15,LOC107681748,LOC107735630 coding upstream 5052 2553904 ~ 2557648 (-)
acbd5b LOC107593842 coding upstream 8878 2557730 ~ 2562460 (-)
pcyt1aa pcyt1aa,LOC107727528,LOC107671662,LOC107709348,LOC107559373,LOC107681800 coding upstream 58810 2607662 ~ 2616598 (-)
zbtb41 zbtb41,LOC107671738,LOC107681803 coding upstream 86381 2635233 ~ 2644768 (-)
LOC122324390 LOC107593766,LOC107681804,LOC107727529,LOC107559348 coding upstream 112888 2661740 ~ 2665774 (-)
G8885 fam78ba,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC107102035,LOC105891364,LOC103357776 non-coding downstream 18713 2326064 ~ 2525847 (-)
G8919 NA non-coding downstream 76324 2466887 ~ 2468236 (-)
G8889 NA non-coding downstream 143963 2348072 ~ 2400597 (-)
G8862 pde4bb,LOC107681771,LOC107719260,LOC107593782,LOC107559365,LOC107671696 non-coding downstream 314267 2229822 ~ 2230293 (-)
G8859 NA non-coding downstream 323722 2219948 ~ 2220838 (-)
G8949 LOC107593767,LOC107727546,LOC107681837 non-coding upstream 98043 2646895 ~ 2647796 (-)
G8941 LOC107727545,LOC107577584 non-coding upstream 109561 2658413 ~ 2661082 (-)
G8964 NA non-coding upstream 148353 2697205 ~ 2742439 (-)
G8966 NA non-coding upstream 149620 2698472 ~ 2699138 (-)
G9056 NA non-coding upstream 400369 2949221 ~ 2978457 (-)
G8931 slc35a3b,LOC107559354,LOC107671667,LOC107593843 other downstream 3578 2531836 ~ 2540982 (-)
LOC122358781 LOC107670596,LOC107717621,LOC107758059,LOC107709348,LOC107575479,LOC107671662 other downstream 27300 2511607 ~ 2517260 (-)
G8921 LOC107719259,LOC107593781,LOC107559342,LOC107671695,LOC107709351 other downstream 41821 2476713 ~ 2502739 (-)
G8913 NA other downstream 101241 2442184 ~ 2443319 (-)
G8880 bcl6ab,LOC107593779,LOC107719257,LOC107559367,LOC107709352,LOC107681786,LOC107671762 other downstream 102847 2439361 ~ 2441713 (-)
anxa13l anxa13l,anxa13,LOC107681706,LOC107727547,LOC107559374,LOC107671694 other upstream 42775 2591627 ~ 2597845 (-)
prkag2b prkag2b,LOC107559383,LOC107711714,LOC107671734,LOC108430764,LOC107727488 other upstream 236906 2785758 ~ 2813488 (-)
G9089 gpr158b,LOC107727549,LOC107661898,LOC107593759,LOC107711710,LOC107671743,LOC107558004 other upstream 609982 3158834 ~ 3164824 (-)
G9115 cyp8b1,cyp8b3,LOC107727542,LOC107661909,LOC107558014,LOC107593879,LOC107711691,LOC107671665 other upstream 762113 3310965 ~ 3312914 (-)
jmjd4 jmjd4,LOC107558017,LOC107727502,LOC107711689,LOC107671663,LOC107593877,LOC107661902,LOC107661892,LOC107727496 other upstream 789293 3338145 ~ 3343544 (-)

Expression


Co-expression Network