imp3 (imp3,LOC107671714,LOC107681808)


Basic Information

Item Value
gene id imp3
gene name imp3,LOC107671714,LOC107681808
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2541915 ~ 2544563 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254791.1
TTCCGTGCAGAAAACTCGGAGAATGAAAACCACGCGCGTGAAGGCTAGCGCGTGCGTGATAACTGGAGAATAACAACTTGCGTTGCGTTAAATGTAATCGGTTCAATTCGCAAAATGGTTCGTAAATTGAAATTTCACGAGCAGAAACTCTTGAAGAAAGTTGATTTTATTAACTGGGAGGTTGACAACAATTTACACGAGATCAAAGTGTTGAGAAAATACCACATCGAGAAGAGGGAAGATTACACCAAGTACAACAAACTTAGTCGAAATATCAGAGAACTGGCTCAGAAAATACGTGACTTGGACGAAAAGGACGGTTTCAGAGCTCAAAGCACGGccctttttttagaaaaaatttaCAGTGTCGGTTTGATTCCCACAAAACAGAACCTCTCTCTTGCGAATGAAGTCTGTGCATCTGCATTCTGCAGGAGGCGGCTTCCCTCGATCTTGCTGAAGTTGCGTATGGCCCAGAACCTGAAGACTGCCATAACCTTCATCGAGCAGGGCCATATTCGTGTTGGGCCTGAGATTATCACTGATCCCGCTTTTCTCGTAACAAGGAGTATGGAAGACTTCGTCACATGGGTGGATTCATCCAAGATCAAACAACATGTCCTGAACTACAATGAGGAGCGAGACGACTTCGACCTCATCGTCTGAATTTCCAAACGCGTTGGATTCCAACCAGAAACGCTCGGCGCGTCAAGATCAGCTGTTTGTTTGTGATTCCGCAAAtaacatgtatataatttatgccACGTGAGACAAAATGACCATCTTGAACCATTTTCAGTGACTGTGTATCAAAACAATAAACCGTTACACTTA

Function

symbol description
imp3 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3).

NR:

description
U3 small nucleolar ribonucleoprotein protein IMP3

GO: NA

KEGG:

id description
K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254791.1 True 834 mRNA 0.43 7 2541915 2544563

Neighbor

gene id symbol gene type direction distance location
LOC122360938 LOC107593781,LOC107719259,LOC107709351,LOC107671695,LOC107559342 coding upstream 31905 2495943 ~ 2510010 (+)
LOC122360901 NA coding upstream 80693 2453850 ~ 2461222 (+)
LOC122358704 cmpk,cmpk1,LOC107719256,LOC107681787,LOC107671754,LOC107559368,LOC107709354 coding upstream 110458 2427557 ~ 2431457 (+)
LOC122358767 tsen15,LOC107735630,LOC107681748 coding upstream 150463 2390878 ~ 2391452 (+)
LOC122358683 fam78ba,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC105891364,LOC107102035,LOC101481240 coding upstream 214472 2322711 ~ 2327443 (+)
abi1b abi1b,LOC107671751,LOC107559371,LOC107681778 coding downstream 18614 2563177 ~ 2581265 (+)
ap2m1a ap2m1a,ap2m1b,ap2m1,LOC107671693,LOC107593770,LOC107709357,LOC107602122 coding downstream 54205 2598768 ~ 2606856 (+)
dvl3a dvl3a,LOC107681796,LOC107671749,LOC107559372,LOC108430757 coding downstream 76279 2620842 ~ 2632556 (+)
LOC122328513 LOC107727546,LOC107671763,LOC107559376,LOC107709337 coding downstream 100432 2644995 ~ 2657785 (+)
ahsg2 LOC107727545,LOC107681805,LOC107577584,LOC107559377 coding downstream 113840 2658403 ~ 2661029 (+)
G8737 NA non-coding upstream 96715 2443588 ~ 2445200 (+)
G8716 NA non-coding upstream 220728 2288286 ~ 2321187 (+)
G8717 NA non-coding upstream 251875 2288825 ~ 2290040 (+)
G8703 NA non-coding upstream 288324 2249222 ~ 2253591 (+)
G8707 NA non-coding upstream 314664 2226905 ~ 2227251 (+)
G8764 NA non-coding downstream 67959 2612522 ~ 2613104 (+)
G8794 NA non-coding downstream 274509 2819072 ~ 2872749 (+)
G8816 NA non-coding downstream 367728 2912291 ~ 2912787 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding downstream 572285 3116848 ~ 3121053 (+)
G9130 ipp non-coding downstream 978707 3523270 ~ 3524571 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other upstream 121960 2406742 ~ 2419955 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other upstream 140170 2398954 ~ 2401745 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other upstream 253699 2270679 ~ 2288216 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other upstream 350467 2178766 ~ 2191448 (+)
arl14 arl14,LOC107722413,LOC107719289 other upstream 605156 1933512 ~ 1936759 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other downstream 3503 2548066 ~ 2555321 (+)
G8760 NA other downstream 47071 2591634 ~ 2592758 (+)
LOC122355548 NA other downstream 72644 2617207 ~ 2669943 (+)
LOC122328998 NA other downstream 73439 2618002 ~ 2618134 (+)
LOC122329004 NA other downstream 73753 2618316 ~ 2618449 (+)

Expression


Co-expression Network