extl2 (extl2,LOC107722455)


Basic Information

Item Value
gene id extl2
gene name extl2,LOC107722455
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1563005 ~ 1568542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255388.1
AGGCTCAGTGCGCATGCGCTAGAAAGTAAACTTCCTTCTGGGATCTCATATGATGGGAATACAATGAGGATTCGCTGGTGCTGCTGCAGGTCTTTGGGCCGAGTGCGGACACACTTCATCATCGCCTCTATACTGTTGCTGCTTCTGGCTGGAGTCTCTCTGACCTTCTTACTGCCTAACAATGAGGACGGCAGCATTCTCCGAGAGCTCCGTCAGAGCTCCAACCACTCGGCCCCTCTACTGGACCCCGAGGATAGTTTTACTATTATCATGCAAACCTATAACCGCACTGATATTCTCCTCAAGCTCCTCAACCATTATCAGGCTGTGCCTCGCCTGCAGTGCGTCCTCATAGTGTGGAACAACCCTAGCGAGTCGCCGCCCAGGAAACTGTGGGATGAACTCGGCCCCCACCCGGTGCCTGTCGTCTTTAAAGAGCAGAGCTTCAACAGAATGCGTAATCGCCTGCAGCCTCATCCCGAGATCAGGACTGATGCCGTTTTGATGCTAGATGATGACACGTTGGTCAGTGTTCCTGATATCAGCTTTGCCTTTTCTGTCTGGAAGCAATTCTCAGATCAGATTGTGGGTTTTGTTCCACGTAAGCATGTGAGCACAGCATCTGGAGTGTACAGCTACGGCAGCTTTGAGCTTCAGGATCCAGACAAAGGTGGAGGTGACAGGTATTCGATGGTCCTGGTGGGTGCAGCGTTCTTCCATCGGCGCTACCTGAAGCTGTTCCAAGAGCAGCCGGGTGAAGTGCACGCTCTGGTGGACCGAACGCAGAACTGTGACGACATCGCCATGAACTTCGCCGTGGCACGCCACCTCTCACAGGCGTCCGGGCTAGAGCGGCCCTCCGGGGTGTTCGTGAAGCCCGTGGACATGCGCAATCTGGAGAAGGAAGCCAGCAGCGGGTATGTGGGCATGTGGCACAGAGCGGAGCACATGCTGCAGCGCTCCTACTGCCTCAACAAACTCGCACGCATCTACGGGAACATGCCGCTCCGCTACTCCAACATCATGATCTCACAGTTTGGCTTCCCCAGCTATGCTAATCACAAGAGCAGGATGTGATGTCAACACATTTTAGAGACGGGTACAATCCGAATTATAAGATATTAAATCGTCTTTTTGGACCCATACCATCTCATAATGTACAAATGTACATGTCTCCAGTAGATGGAGTGATAAATTTACTGCCTTCACCTTTACCAACATAGTATAATGTAGGTgttttttgttagattttttttttttttaaagctaattaTTAAGCTGTATTATTTTgaggttgttattattattattattgttattatttattattattattattattattattattatcagcatcaaaaggtaaaaatatagaatgtacttttaataaataatttagcactcttaaaattcaaaatactaCAGCATTATAATTAGTTGAACTGTGacaaaaatatctgcaaaagCATTATTTACCTTTGATTTTAGCTTGTAAATAATTCTGAATAAAACAGTAGAACAGTAAAATTTATGGTAAGCAtt

Function

symbol description
extl2 Predicted to enable glycosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human EXTL2 (exostosin like glycosyltransferase 2).

NR:

description
exostosin-like 2 isoform X2

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K02369 EXTL2; alpha-1,4-N-acetylglucosaminyltransferase EXTL2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255388.1 True 1545 mRNA 0.45 6 1563005 1568542

Neighbor

gene id symbol gene type direction distance location
zgc:153115 zgc:153115,LOC107722210,LOC107701340,LOC107681793,LOC105889440,LOC105030379,LOC106568757 coding upstream 37431 1517697 ~ 1525574 (+)
asip2b agrp2,LOC107593895,LOC107715506,LOC107701329,LOC107681750,LOC107722688,LOC107568624 coding upstream 90156 1469060 ~ 1472849 (+)
LOC122360630 LOC107681692 coding upstream 115106 1440938 ~ 1447899 (+)
dcun1d1 dcun1d1,LOC107681826,LOC107568628,LOC107722250,LOC107708830,LOC105889496 coding upstream 166827 1390712 ~ 1396178 (+)
b3gnt5b LOC107593805,LOC107709072,LOC107656860,LOC107681747,LOC107568627,LOC107722519 coding upstream 181535 1375058 ~ 1381470 (+)
LOC122361145 dbt,LOC107681723,LOC107715513,LOC107593857,LOC108411488 coding downstream 23451 1591993 ~ 1598263 (+)
rgs18 rgs18,LOC107681733,LOC107715502,LOC107701327,LOC107560778,LOC107722673 coding downstream 279544 1848086 ~ 1855235 (+)
rgs1 LOC107681696,LOC107560781,LOC107701325,LOC107722662 coding downstream 295963 1864505 ~ 1867191 (+)
rgs13 LOC107715509,LOC107593894,LOC107681737,LOC107560784,LOC107722654,LOC107701324 coding downstream 305480 1874022 ~ 1876886 (+)
si:dkey-119f1.1 si:dkey-119f1.1,LOC107593797,LOC107701334,LOC107722422,LOC107560764 coding downstream 312149 1880691 ~ 1901747 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding upstream 137710 1407651 ~ 1425295 (+)
G8449 NA non-coding upstream 177019 1383892 ~ 1385986 (+)
G8451 NA non-coding upstream 180682 1382119 ~ 1382323 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding upstream 359991 1197427 ~ 1203014 (+)
G8394 NA non-coding upstream 376973 1180130 ~ 1186032 (+)
G8508 NA non-coding downstream 30504 1599046 ~ 1673755 (+)
G8519 nos1apb,LOC107715504,LOC107593855,LOC107681742,LOC107560777,LOC107701337 non-coding downstream 63774 1632316 ~ 1636622 (+)
G8556 NA non-coding downstream 112885 1681427 ~ 1683093 (+)
G8585 LOC107701323,LOC107593893,LOC107719279,LOC107560771,LOC107722646 non-coding downstream 350164 1918706 ~ 1919313 (+)
G8586 NA non-coding downstream 350870 1919412 ~ 1922223 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other upstream 3231 1544773 ~ 1559774 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other upstream 154284 1397524 ~ 1408721 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 734600 799932 ~ 828405 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 1105260 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 1317641 241451 ~ 245364 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 334525 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 364970 1933512 ~ 1936759 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 610224 2178766 ~ 2191448 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other downstream 702137 2270679 ~ 2288216 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other downstream 830412 2398954 ~ 2401745 (+)

Expression


Co-expression Network