tbl1xr1b (tbl1xr1b,LOC107656866,LOC108437519,LOC107568629,LOC103032574,LOC108267995,LOC107722285,LOC106530177,LOC105889501)


Basic Information

Item Value
gene id tbl1xr1b
gene name tbl1xr1b,LOC107656866,LOC108437519,LOC107568629,LOC103032574,LOC108267995,LOC107722285,LOC106530177,LOC105889501
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1356240 ~ 1371916 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255777.1
TGCTAGTCTGAGGCCGTCGGCTTCCTCTGAAGCGCTTGGCTGTCCATAAGCtgctaaatgtttattttattcctttatatTTCCCACATACAAGCAGGACAATAGATCATATTCGAGGACAGAAGTATcagagtggagtggaaaggtCGAGGGATACCCTTCTGTGGGATCTGAGTCGGCGCTGTGGCACATTTGTTCAGTACTTTAGCTCCAGAAGCTAGCGGTTGACGAGACTGGAAGCATCGGCACGAGCTGATTTGACTTTGCTCCCATGGATAGCAAGAGTATGAGCATCTAATCCACGCTTGGTATCATGGCTCCACTCTCGCCTTGACCTCTTGGTTCACCCAGGATCCAAAATGAGCATAAGCAGTGATGAGGTCAATTTCCTGGTCTACAGATACCTGCAGGAGTCAGGCTTCTCCCACTCAGCCTTCACCTTTGGCATAGAGAGCCACATCAGCCAGTCCAACATCAACGGAGCTCTGGTGCCCCCTGCTGCCCTCATCTCTATCATCCAGAAAGGCCTGCAGTACGTGGAGGCCGAAGTCAGCATCAATGAGGATGGTACTCTGTTTGATGGACGACCGATCGAGTCGCTGTCGTTGATTGATGCAGTGATGCCAGACGTGGTGCAAACGAGGCAGCAGGTGTATAAGGATAAGCTGGCTCAGCAGCAGGCTGCCACCGCCTCCAGCGCCACAACAGCCACCGCTGCCAAGAACGGAGAGAACACGGCTAACGGAGAGGAGAACGGATCTCACACGCTGTCTAACCACCACTCAGACATGATGGAGGTGGACAGGGCTGTGGAGATCCCGGCCAGTAAAGCCATGGTCCTGCGGGGCCACGAGTCTGAGGTCTTCATCTGTGCATGGAACCCTGTCAGTGATCTGTTGGCGTCTGGCTCTGGAGACTCAACCGCACGGATCTGGAACCTGAGCGAGAGTAGCGCAGGAGGATCCACTCAGCTGGTGCTGCGGCACTGCATTCGGGAGGGGGGGCAGGATGTACCCAGCAACAAAGACGTCACCTCACTAGACTGGAATAGTGAAGGTACACTTCTCGCCACAGGATCCTATGATGGCTTTGCCAGGATATGGACTAAAGATGGTAATCTTGCCAGTACACTGGGGCAGCACAAAGGTCCCATATTTGCTTTAAAGTGGAACAAGAAAGGAAATTTTATCCTCAGCGCTGGTGTTGATAAGACCACCATTATTTGGGACGCACACACAGGAGAGGCCAAACAGCAGTTTCCATTCCATTCAGCTCCGGCTCTGGACGTGGACTGGCAGAGCAACAACACGTTTGCGTCCTGCAGCACGGACATGTGCATTCACGTGTGCAAACTGGGCCAGGACAGACCAGTCAAAACATTCCAGGGCCACACAAATGAAGTCAATGCAATCAAATGGGATCCAACAGGAAATCTTTTGGCCTCCTGCTCTGATGACATGACCCTTAAGCTTTGGAGCATGAAACAGGACACTTGTGTTCATGACCTGCAAGCCCACAGTAAGGAGATCTACACCATCAAATGGAGCCCAACTGGCCCTGGAACCAACAACCCCAACGCCAACCTCATGCTGGCCAGTGCTTCGTTCGATTCAACGGTGCGCCTGTGGGACGCGGAGCGTGGAGCCTGCATCCACACGCTGACCAAACACCAGGAGCCCGTCTACAGCGTGGCATTCAGCCCGGACGGCCGGCACCTGGCCAGCGGCTCCTTCGACAAGTGTGTCCATATCTGGAACACACAGAGTGGTGCTTTAGTCAACAGCTACAGAGGGACGGGGGGGATTTTTGAAGTATGCTGGAACTCCACTGGAGACAAAGTGGGCGCAAGTGCATCAGATGGATCGGTTTGTGTATTAGACCTGAGGAAATGACGCTGCCGCTGGGAAGCCATGGACCGACTATGAATGTGTGCATAGCCAAATTTACTGACTGTCCCTGGTCCATCATCCACTGCTGTAATCACGAGTGAGGCTCCAGACCAACACGGACCCGTGACGCTTACGACACACACAAGAGCAGCGTGCCAGAGAACtgttacacacagacacactggaCACAAGAGAACCACatcgtgcacacacacacacacccacacacaccccTCATTAGTTCGTGTGCTTATCATTCCAAACACAGGGGCCGAGGTCCACGCCGCTGTCGTGCGCATATTGTACACGTCAGCGCTCGAGTGACGGTTTAGGTGTAACTGCATGAGATGAAGAGCAGAGCTGTTGAATGTGGCCGACTCGTGGCCCGTGTGATATCGACAATTCTGAGTATTGGCACTGTATGTTTAGCGGCTCTGCGACTTTTGGAACTGTTCTCCAAAAATGCTCaaggattttttgttttttttttttttttttgccaaacttCGAgaattagtttgatcttcttttttggggggtttgtttagtttttttttaatacagagtTAGAAGAGTACATAAATCCTATTAAATTACTCGACTATATTTTCTAAAA

Function

symbol description
tbl1xr1b Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation and regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Is expressed in female organism. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 41. Orthologous to human TBL1XR1 (TBL1X receptor 1).

NR:

description
PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1

GO: NA

KEGG:

id description
K04508 TBL1; transducin (beta)-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255777.1 True 2505 mRNA 0.51 16 1356240 1371916

Neighbor

gene id symbol gene type direction distance location
kcnmb3 LOC107708981,LOC107599858,LOC107681773 coding upstream 11227 1340743 ~ 1345013 (+)
ephb3a ephb3a,LOC107681809,LOC107599837,LOC107722542,LOC107708817,LOC107656865,LOC108437521,LOC108267069,LOC105889460,LOC102226142 coding upstream 47421 1279837 ~ 1308819 (+)
pls1 pls1,LOC107722705,LOC107656864,LOC107565818,LOC107709028,LOC107681752,LOC108437523 coding upstream 93162 1248218 ~ 1263078 (+)
si:ch211-71m22.1 si:ch211-71m22.1,LOC107722310,LOC107703220,LOC107599861,LOC107558181,LOC107681688 coding upstream 288798 1062189 ~ 1067442 (+)
LOC122357578 LOC107681832,LOC107709017,LOC108437507,LOC103030036,LOC107599862 coding upstream 294966 1052080 ~ 1061274 (+)
b3gnt5b LOC107593805,LOC107709072,LOC107656860,LOC107681747,LOC107568627,LOC107722519 coding downstream 3142 1375058 ~ 1381470 (+)
dcun1d1 dcun1d1,LOC107681826,LOC107568628,LOC107722250,LOC107708830,LOC105889496 coding downstream 18796 1390712 ~ 1396178 (+)
LOC122360630 LOC107681692 coding downstream 69022 1440938 ~ 1447899 (+)
asip2b agrp2,LOC107593895,LOC107715506,LOC107701329,LOC107681750,LOC107722688,LOC107568624 coding downstream 97144 1469060 ~ 1472849 (+)
zgc:153115 zgc:153115,LOC107722210,LOC107701340,LOC107681793,LOC105889440,LOC105030379,LOC106568757 coding downstream 145781 1517697 ~ 1525574 (+)
G8393 dia1a,LOC107599840,LOC107681802,LOC107722302,LOC107565821,LOC107679841 non-coding upstream 153226 1197427 ~ 1203014 (+)
G8394 NA non-coding upstream 170208 1180130 ~ 1186032 (+)
G8222 dnajb4,LOC107681825,LOC107599850,LOC107708915,LOC107566472,LOC107751861,LOC107690981 non-coding upstream 573495 680687 ~ 782745 (+)
G8173 NA non-coding upstream 684677 668304 ~ 671563 (+)
LOC122328698 NA non-coding upstream 711314 643034 ~ 644926 (+)
G8451 NA non-coding downstream 10203 1382119 ~ 1382323 (+)
G8449 NA non-coding downstream 11976 1383892 ~ 1385986 (+)
G8469 LOC107715522,LOC107681815,LOC108437516,LOC108267691 non-coding downstream 35735 1407651 ~ 1425295 (+)
G8508 NA non-coding downstream 227130 1599046 ~ 1673755 (+)
G8519 nos1apb,LOC107715504,LOC107593855,LOC107681742,LOC107560777,LOC107701337 non-coding downstream 260400 1632316 ~ 1636622 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 527835 799932 ~ 828405 (+)
LOC122360757 fam73b,miga2,miga1,LOC107599369,LOC107705989,LOC107675762,LOC107737175,LOC107661559,LOC107708777,LOC107681767,LOC107722319,LOC107703235,LOC107558173 other upstream 898495 447162 ~ 457745 (+)
LOC122325097 fuz,LOC107708997,LOC107691039 other upstream 1110876 241451 ~ 245364 (+)
G8167 NA other upstream 1132873 200092 ~ 223367 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other downstream 25608 1397524 ~ 1408721 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other downstream 172857 1544773 ~ 1559774 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other downstream 531151 1903067 ~ 1910679 (+)
arl14 arl14,LOC107722413,LOC107719289 other downstream 561596 1933512 ~ 1936759 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 806850 2178766 ~ 2191448 (+)

Expression


Co-expression Network