vps4b (vps4b,LOC107710065,LOC107681797,LOC107727524,LOC107671729)


Basic Information

Item Value
gene id vps4b
gene name vps4b,LOC107710065,LOC107681797,LOC107727524,LOC107671729
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2717573 ~ 2729493 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043256604.1
tccctaCAGGGTGATATGgtcaaaactacatttttggataaactcTGCAAAATCAGGACGCTGGGACACTTACAAGAAAAGGATGTGGTCAAAACCCATTTAAAACCAGCATGCTGTCCTAATAAGATCGGGTGTAGAGGTCGCTGTTTGTCGTGTCGTCTCTGGTTATTATCATGCCCGATCTATGAGTCAATAATTCAACGCCAACAATACCGAAACTCAACAGAGAGCGACTTCACAACAAATCAGCGTGACATGGAGCCCACCAACTTACAgAAAGCTATAGCTATAGCCAACAAAGCTTCACAAGAGGACCAGGCTGGAAATTATGAGGAAGCCGTTCAATCTTATCAAcatgctgtgaaatattttctGCATATAATAAAACGTGAACCGCAGGGTAAGGAGGGCAATCAGAAGATCAGAGATAAGTGTAAGCAGTATCTAGACAGAGCAGAAGAGCTCCGAGACTATCTTGATAAGAAAGAGAAAGCTATAGATCTGGCCGGTAAGGCGGCTCAGGAGGACAAGGCTGAAAATTATGAAGAGGCCCTGCGTCTGTATCAACATGCTGTTCAATATTTCCTGCATGTTGTCAAATatgaAGCACAGGGTGATAAGGCCAAACAAAGCATTCGGGCCAAATGTGCTGAATATTTAGACCGAGCGGAGAAGCTGAAAGAGTAtttgaagaagaaagagaaagcccCGGCGAAACCGGTGAAGGAGTCTCAATCCAGCGACAAAGGCAATGAAAGCGATGGAGAAGGAGAAGATccagagaaaaagaaatttcAGAATCAACTCTCAGGAGCCATTGTCATGGAGAAGCCGAACATTAAATGGAATGATGTTGCTGGGTTGGAGGGAGCCAAAGAGGCTTTGAAAGAAGCTGTCATCCTACCAATCAAATTCCCACACCTCTTCACAGGTAAAAGAACTCCCTGGAGGGGCATCCTTCTCTTTGGGCCTCCTGGAACAGGCAAATCTTACCTGGCCAAAGCAGTCGCAACAGAAGCCAACAATTCCACCTTCTTTTCCATCTCCTCCTCAGACCTGGTGTCCAAGTGGCTGGGAGAGAGTGAAAAGCTGGTGAAGAATCTGTTCACTTTGGCTCGAGAGCACAAGCCCTCTATTATCTTCATTGATGAAATCGATTCGCTCTGCGGCTCCAGGAGCGAGAATGAAAGTGAAGCAGCTCGCAGAATCAAGACCGAGTTTCTGGTTCAGATGCAAGGTGTAGGCAATGACAATGAAGGGATCCTGGTGCTGGGAGCCACAAACATCCCCTGGACGTTGGATTCTGCCATCAGGAGACgGTTTGAGAAACGTATCTACATTCCTCTGCCGGAAGAGCACGCTCGTGGGTTCATGTTCAAGCTGAATCTAGGCAGCACGCCTAACAGTCTCACCGAATCAGACTTCGTGACTCTGGGCAAGAAGACGGACGGTTACTCGGGTGCTGACATCAGCATCATCGTCAGAGACGCCCTCATGCAGCCCGTCAGGAAGGTTCAGTCCGCCACTCACTTCAAACGGgTACGAGGACCGTCAAGGAATGAGCCGAATGTCGTAGTCGATGACCTCTTAACCCCTTGCTCCCCAGGAGATCCACAGGCTGTAGAAATGACATGGATGGAAGTCCCCGGAGAGAAACTTTTGGAGCCAATTGTTTCCATGTCGGACATGCTGAGGTCCCTCGCCAACACGAAGCCCACCGTCAACGAGCAGGATCTGGAGAAGCTGAAAAAGTTCACCGAGGACTTTGGACAGGAGGGCTGAACAGAGCCGGTCTCCCGAAACCAAAGCAAACAGATTGCGATTGTAACATCTTCTCTCTTGCCCTTCACACGCCCCTCTCTTCCTTTCGTACCCACGCTCTCCCTCTGACCGACGAGCCCCTTCAGCTCAGGCTAAAGGCTAGATGTAATTTGAAATGTGCATCTCTTCAAGCCCACCTCAGTTTTCCTTCACACGTTAATAGCTGCTCTGCCTGCAAGGCTGCCATCAGTACCTGGTGACCATCATGCATCTTTGATCCTTAATAAGCGGTCTCGATCACAATTATCTGTGCTTTCTATGAATAACACAGTCAGCAGTACCTAAAACaattagaaattattatttgttcctTTCATGAAGTGactaaactaataataatgtcaGTTTTGTTTACGGTCACGTAAATCCGAATGGACAATAACACACGAAGGCTTTCCAGCTCCCATTTGCTTTTGTCGGCCGTGCTGTTTGTCGTTTTGGACTTCGTTCACAAGGGTAGTGAGATGTGTCTTTCCGGACAGAGCcatgtattcattttcatttgagaaAGCCATGGTTTGAATCTGCATCGGCATTCGACGTAACACCTAGAGATCCGCGTTCAACAATTCAGGCTCTATTTGCATATACTACGTATGGTTTTTTCTCCATGTACATTGTTACTTTCAgtatattactgtaaaatgtgcTATTCCTTTACTGAGATGAGTTACATTATATGTTCAGGGGCCAATGTCGGACATTTTGTTGTAAGTTCACTTGCTGAGGCTCAGCACACAATGTGCCTTCTTCGCATTTTCCtcctgtctgtttgtctctttcGATCTGCGTACACATAGATGCACAGATGATGCTTACTGATGGCTATATAACTGAATTTTTATAGGCAGAAGGTTTGGGAATGATTGGATGATATTtgcacatttcatttcaaactttacaaacaatatatatgatatatatatatatatcaatctgTATACAGCTCCTATGCACTTATAGGGTGTTTGGTTTGCCATTTAAAAACCTATAAGACATTGTACTATTAGAATAACAATTTAGAAAAGatgtgtttggtttgttttaaggATAAGTCTCGTTAAACAGACTGCTTGCGGACAGTTTAAAAGTGGTTTATCTCGTTCGTTTTACTATTCACATGTAAATAAAGGTTGGAATTAAA
>XM_043256611.1
GGCGGAAGTGACATTCGACATTTTAATGcggaagttgtttttttttccctctgttaTTCTCCGACCTCAAAAATAAGTATCGAAAAATCCTACATTTACAACCCtcgttgtttgtttgtaaaaccGTGACAGTTTGCTAGTATATCGTCGTCTTTATATTTCCGAAACACGCCGTTCGTTCGTGCTTTTTTTCAGCCCCTATGGCTGCCAACAACTTACAGAAAGCTATAGATCTGGCCGGTAAGGCGGCTCAGGAGGACAAGGCTGAAAATTATGAAGAGGCCCTGCGTCTGTATCAACATGCTGTTCAATATTTCCTGCATGTTGTCAAATatgaAGCACAGGGTGATAAGGCCAAACAAAGCATTCGGGCCAAATGTGCTGAATATTTAGACCGAGCGGAGAAGCTGAAAGAGTAtttgaagaagaaagagaaagcccCGGCGAAACCGGTGAAGGAGTCTCAATCCAGCGACAAAGGCAATGAAAGCGATGGAGAAGGAGAAGATccagagaaaaagaaatttcAGAATCAACTCTCAGGAGCCATTGTCATGGAGAAGCCGAACATTAAATGGAATGATGTTGCTGGGTTGGAGGGAGCCAAAGAGGCTTTGAAAGAAGCTGTCATCCTACCAATCAAATTCCCACACCTCTTCACAGGTAAAAGAACTCCCTGGAGGGGCATCCTTCTCTTTGGGCCTCCTGGAACAGGCAAATCTTACCTGGCCAAAGCAGTCGCAACAGAAGCCAACAATTCCACCTTCTTTTCCATCTCCTCCTCAGACCTGGTGTCCAAGTGGCTGGGAGAGAGTGAAAAGCTGGTGAAGAATCTGTTCACTTTGGCTCGAGAGCACAAGCCCTCTATTATCTTCATTGATGAAATCGATTCGCTCTGCGGCTCCAGGAGCGAGAATGAAAGTGAAGCAGCTCGCAGAATCAAGACCGAGTTTCTGGTTCAGATGCAAGGTGTAGGCAATGACAATGAAGGGATCCTGGTGCTGGGAGCCACAAACATCCCCTGGACGTTGGATTCTGCCATCAGGAGACgGTTTGAGAAACGTATCTACATTCCTCTGCCGGAAGAGCACGCTCGTGGGTTCATGTTCAAGCTGAATCTAGGCAGCACGCCTAACAGTCTCACCGAATCAGACTTCGTGACTCTGGGCAAGAAGACGGACGGTTACTCGGGTGCTGACATCAGCATCATCGTCAGAGACGCCCTCATGCAGCCCGTCAGGAAGGTTCAGTCCGCCACTCACTTCAAACGGgTACGAGGACCGTCAAGGAATGAGCCGAATGTCGTAGTCGATGACCTCTTAACCCCTTGCTCCCCAGGAGATCCACAGGCTGTAGAAATGACATGGATGGAAGTCCCCGGAGAGAAACTTTTGGAGCCAATTGTTTCCATGTCGGACATGCTGAGGTCCCTCGCCAACACGAAGCCCACCGTCAACGAGCAGGATCTGGAGAAGCTGAAAAAGTTCACCGAGGACTTTGGACAGGAGGGCTGAACAGAGCCGGTCTCCCGAAACCAAAGCAAACAGATTGCGATTGTAACATCTTCTCTCTTGCCCTTCACACGCCCCTCTCTTCCTTTCGTACCCACGCTCTCCCTCTGACCGACGAGCCCCTTCAGCTCAGGCTAAAGGCTAGATGTAATTTGAAATGTGCATCTCTTCAAGCCCACCTCAGTTTTCCTTCACACGTTAATAGCTGCTCTGCCTGCAAGGCTGCCATCAGTACCTGGTGACCATCATGCATCTTTGATCCTTAATAAGCGGTCTCGATCACAATTATCTGTGCTTTCTATGAATAACACAGTCAGCAGTACCTAAAACaattagaaattattatttgttcctTTCATGAAGTGactaaactaataataatgtcaGTTTTGTTTACGGTCACGTAAATCCGAATGGACAATAACACACGAAGGCTTTCCAGCTCCCATTTGCTTTTGTCGGCCGTGCTGTTTGTCGTTTTGGACTTCGTTCACAAGGGTAGTGAGATGTGTCTTTCCGGACAGAGCcatgtattcattttcatttgagaaAGCCATGGTTTGAATCTGCATCGGCATTCGACGTAACACCTAGAGATCCGCGTTCAACAATTCAGGCTCTATTTGCATATACTACGTATGGTTTTTTCTCCATGTACATTGTTACTTTCAgtatattactgtaaaatgtgcTATTCCTTTACTGAGATGAGTTACATTATATGTTCAGGGGCCAATGTCGGACATTTTGTTGTAAGTTCACTTGCTGAGGCTCAGCACACAATGTGCCTTCTTCGCATTTTCCtcctgtctgtttgtctctttcGATCTGCGTACACATAGATGCACAGATGATGCTTACTGATGGCTATATAACTGAATTTTTATAGGCAGAAGGTTTGGGAATGATTGGATGATATTtgcacatttcatttcaaactttacaaacaatatatatgatatatatatatatatcaatctgTATACAGCTCCTATGCACTTATAGGGTGTTTGGTTTGCCATTTAAAAACCTATAAGACATTGTACTATTAGAATAACAATTTAGAAAAGatgtgtttggtttgttttaaggATAAGTCTCGTTAAACAGACTGCTTGCGGACAGTTTAAAAGTGGTTTATCTCGTTCGTTTTACTATTCACATGTAAATAAAGGTTGGAATTAAA

Function

symbol description
vps4b Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Acts upstream of or within odontogenesis. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Is expressed in ceratobranchial 5 primary tooth; pharyngeal arch 3-7; and pharyngeal pouch. Orthologous to human VPS4B (vacuolar protein sorting 4 homolog B).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4B isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043256604.1 True 2965 mRNA 0.45 14 2717573 2729493
XM_043256611.1 False 2697 mRNA 0.45 11 2722211 2729493

Neighbor

gene id symbol gene type direction distance location
LOC122323799 LOC107681838,LOC107709342,LOC107593839,LOC108430687,LOC103043726,LOC105899208 coding upstream 15601 2695421 ~ 2701972 (+)
ahsg2 LOC107727545,LOC107681805,LOC107577584,LOC107559377 coding upstream 56544 2658403 ~ 2661029 (+)
LOC122328513 LOC107727546,LOC107671763,LOC107559376,LOC107709337 coding upstream 59788 2644995 ~ 2657785 (+)
dvl3a dvl3a,LOC107681796,LOC107671749,LOC107559372,LOC108430757 coding upstream 85017 2620842 ~ 2632556 (+)
ap2m1a ap2m1a,ap2m1b,ap2m1,LOC107671693,LOC107593770,LOC107709357,LOC107602122 coding upstream 110717 2598768 ~ 2606856 (+)
bcl2b bcl2b,LOC107727540,LOC107593762,LOC107671740,LOC107711715,LOC107559382 coding downstream 13222 2742715 ~ 2780678 (+)
dpp6b dpp6b,LOC107658692,LOC107711712,LOC107671710,LOC107727490,LOC107558008 coding downstream 226216 2955709 ~ 3064602 (+)
kcnt2 LOC107661911,LOC107727504,LOC107593757 coding downstream 440958 3170451 ~ 3190588 (+)
LOC122355741 LOC107661905,LOC107711709,LOC107671722,LOC107727480,LOC107558019 coding downstream 464519 3194012 ~ 3197447 (+)
LOC122362414 LOC107727480 coding downstream 479659 3209152 ~ 3213666 (+)
G8764 NA non-coding upstream 104469 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 108054 2511622 ~ 2609519 (+)
G8737 NA non-coding upstream 272373 2443588 ~ 2445200 (+)
G8716 NA non-coding upstream 396386 2288286 ~ 2321187 (+)
G8794 NA non-coding downstream 89579 2819072 ~ 2872749 (+)
G8816 NA non-coding downstream 182798 2912291 ~ 2912787 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding downstream 387355 3116848 ~ 3121053 (+)
G9130 ipp non-coding downstream 793777 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 834215 3563708 ~ 3564239 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 27946 2675370 ~ 2689627 (+)
LOC122355548 NA other upstream 47630 2617207 ~ 2669943 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other downstream 143 2729636 ~ 2739907 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other downstream 393631 3123124 ~ 3164823 (+)
G9154 rock1,LOC107671690 other downstream 885989 3615482 ~ 3617043 (+)
G9173 NA other downstream 946932 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 1026678 3756171 ~ 3790339 (+)

Expression


Co-expression Network