LOC122358163 (leprot,LOC107754776,LOC107719262,LOC107681772,LOC107671671)


Basic Information

Item Value
gene id LOC122358163
gene name leprot,LOC107754776,LOC107719262,LOC107681772,LOC107671671
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2205194 ~ 2209223 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043257951.1
TCTCGAAGTTTTTGtaagactgcagctttaagggTGTATCGGTAGTTTGAGGAAATAGGAAGTCAGTCCGGTAACATTTAGCACAAAGGCACAAAAACAAAGGCGCTCGTGAATGATGGCAGGAATCAAAGCTCTGGTCGCGTTATCCTTCAGCGGCGCACTCGGGCTGACTTTTCTCCTTTTGGGATGCGCTCTGCAACAGTTTGGAGTGTACTGGCCGATGTTTGTCCTGATCTTCTACATCCTGTCACCTATCCCGAATTTGATATCCAGGAGGCACGCGGACGACACTGAGTCAAGCAATGCGTGCAGGGAGCTCGCATACTTTTTAACCACTGGAATAGTGGTGTCGGCGTACGGCCTGCCCGTTGTGCTCGCACGAAAATCTGTGATCCAGTGGGGCGCCTGTGGCCTAATAATGGCAGGCAATTGTGTCATTTTTCTGACCATTCTTGGTTTCTTCCTGATATTTGGTGGTGGAGATGACTTTAGCTGGGAACAGTGGTAAAACCTATCCGGGAGAAGAATATATCCGCATTATAAACTACGAAACTTTAAGTGGCTTGCCATGGCGATGCTGATTAACCCAAGCCTGGACAGAGACTGCGTCCATTGCTTCCGTCTTTCTCTCGGTTGTGGCTGCTTTGGCGCTCCGCTTCTGCCTTTTCATTTGCATTACATGCGTATGACTCCGCGTACACAATAATTAGCTTTAAAATGGTAATTATGATGTTGTATTTAAACTTGTTTGAACAGCAAAAAGGGTAAACCTGTATATTAGTTTGCTTCATATTTactcaaatcaaaatcaaaaaatcGATCGGTTATAATTTGCTTGATTTTATTAAACCTGTTGTTGGACCACTTAAAAATTTAGATTTCTTTCCCGCCCTCTCTCAATGCATAAATTGgtgtattaaaaacaaaaaagtcatgtttttattCGCTGTATTACACAAGAGGTTCACAATAATTGACAAATTCCTAAAAGTAGGCTACTACTGAGATTCATGCTTAAATAACGCATTTTAGCACGGACTGGAAATTTAAATCGCATTTAGAATTTAATAATGCACAAAGGTAAGCATAGATTGAACGtatttgtttgtgcttttttagcAGCTTGAATTGTGAGCACATAATTACGCttattaaattatgaatgaTCATTATTTGCACTCGGTTTATAGTTAAGAGGCTTAATGAACGATCAAACAATGCCGCCTAAGAGTTAAAGCAACGCTTTGTGTTTGCAAACAGAAGCGCTGTAACCATGGCAGTCTATGAAGTGTCTTtggcctttgttttttttgcaatgccGCTAATGTCGATTACGGACCGGACCCGTTCAGCTTTAACCTTCTTAAACTGTTTACATACCGTATTACCAAAGCGAACATCTTTCTGCCGTTCTGCAGAAACGGGAAGAAGAGTTAAATGCGTGCGGAATACAATCGTGAACCGCCTTTTAGCGATTACAGAATGCTTATTACAGTTACTTTTATTGGAACCGCATATGATTCATGACATTCCagaaacattttcttataaCTGACATAATTCCACATCAAAGCTTACGAAAAACACTGCGAttgttatgtaatttaatacattgtAGCTTTTTGGGTTTAATGGTTGACAGTTTCACACtacttttgtcatttaataGCTAAGAAAGGTTTTATCCACTGTTTAAAATCTTCCTCTTTTAAAGTCTAGACCGACTTTGCATAGAATCACTTGTATAAGGGATGTTTTTCGTATACCTTTGATCTTGTTTCAGCACTTTCAAGCAATATCCATttgattatttgaattaaaaaacaccatttttttgCCTTGTCGTAATTTTGTCTTCTTCAGTAACTCTATGTAATTAGCGTCAAATTGCACTCTTTTTGACCGATGTGACTTTTAGTTATGGATACAGTAAATCATTACAGAGCGGAGAGATACAGACCAGAGGACTGCTGTACAGTGAACGTAACTATATAAGGTCTGTTTCAAAGACCTGCTCAGACTTAAATATAATGTACGTTTGAATTTGCATCTGGTCTGCTTCCCGTGTTTGCTGCAGACACAGGATGCAGAGAGCGAAGATCTTACACGCAAGAAAGGAGGCGAATATTTCTGTATCTGGAGGTGGCAGATATTGTAGGAGTGAGATTGAGAAGTCACCGAAGCTTGAATGTGATGGAAAGCGAGCCGTAAGATTTTTCTGGATTGTTGCACCTGCGTGGTCTGTCGAGCTCGGATGCTTATTTATTCCTCTAGAGGTCTTGGTCTTCAGAATCTCAATTCAACAAGTGGTCTCTTATTAATGTCGTCATTCGTAATTGTGTCCATAAACGGAATTTGACGTTTTGGGAAACAAATGAacgaaataaatgaaaacttttatttaaataaaattatttttcgtTTCT

Function

symbol description
leprot Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and negative regulation of growth hormone receptor signaling pathway. Predicted to be located in Golgi membrane and endosome membrane. Predicted to be integral component of membrane. Predicted to be active in endosome. Is expressed in pharynx and pronephric duct. Orthologous to human LEPROT (leptin receptor overlapping transcript).

NR:

description
PREDICTED: leptin receptor gene-related protein-like

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043257951.1 True 2426 mRNA 0.39 4 2205194 2209223

Neighbor

gene id symbol gene type direction distance location
LOC122358154 LOC107681836,LOC107719284 coding upstream 27029 2173372 ~ 2178165 (+)
LOC122326519 lrp8,LOC107681710,LOC107671705,LOC107719273,LOC107559340 coding upstream 48955 2083675 ~ 2156239 (+)
ebna1bp2 ebna1bp2,LOC107722608,LOC107580944 coding upstream 129157 2072770 ~ 2076037 (+)
LOC122357653 LOC107719275 coding upstream 153068 2038907 ~ 2052126 (+)
scp2a scp2,scp2a coding upstream 188163 2005196 ~ 2017031 (+)
pde4bb pde4bb,LOC107719260,LOC107681771,LOC107593782,LOC107671696,LOC107559365,LOC108430746 coding downstream 3880 2213103 ~ 2265525 (+)
LOC122326129 tctex1d1,LOC107709344,LOC107719283 coding downstream 82240 2291463 ~ 2293495 (+)
bcl6ab LOC107593779,LOC107681786,LOC107559367,LOC107709352,LOC107671762,LOC107719257 coding downstream 100314 2309537 ~ 2316103 (+)
LOC122358683 fam78ba,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC105891364,LOC107102035,LOC101481240 coding downstream 113488 2322711 ~ 2327443 (+)
LOC122358767 tsen15,LOC107735630,LOC107681748 coding downstream 181655 2390878 ~ 2391452 (+)
G8691 NA non-coding upstream 34374 2170596 ~ 2170820 (+)
G8670 tmem125b,LOC107681734,LOC107719290,LOC107593887 non-coding upstream 149464 2053311 ~ 2055730 (+)
LOC122355709 LOC107593853,LOC107719278,LOC107681699 non-coding upstream 256832 1947128 ~ 1948362 (+)
LOC122362698 NA non-coding upstream 275627 1925860 ~ 1929567 (+)
G8586 NA non-coding upstream 282971 1919412 ~ 1922223 (+)
G8700 NA non-coding downstream 2530 2211753 ~ 2212073 (+)
G8701 NA non-coding downstream 3035 2212258 ~ 2212609 (+)
G8706 NA non-coding downstream 12485 2221708 ~ 2222074 (+)
G8707 NA non-coding downstream 17682 2226905 ~ 2227251 (+)
G8703 NA non-coding downstream 39999 2249222 ~ 2253591 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other upstream 13746 2178766 ~ 2191448 (+)
arl14 arl14,LOC107722413,LOC107719289 other upstream 268435 1933512 ~ 1936759 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other upstream 294515 1903067 ~ 1910679 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other upstream 645420 1544773 ~ 1559774 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other upstream 796473 1397524 ~ 1408721 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other downstream 61456 2270679 ~ 2288216 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other downstream 189731 2398954 ~ 2401745 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other downstream 197519 2406742 ~ 2419955 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other downstream 338843 2548066 ~ 2555321 (+)
G8760 NA other downstream 382411 2591634 ~ 2592758 (+)

Expression


Co-expression Network