LOC122358683 (fam78ba,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC105891364,LOC107102035,LOC101481240)


Basic Information

Item Value
gene id LOC122358683
gene name fam78ba,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC105891364,LOC107102035,LOC101481240
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2322711 ~ 2327443 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258538.1
taattcgtgtataaaatatattgactCAATTtaagtgacatttaaatgtgttactATAGACCTTAAACATTTCACACACTACGTAAAAATTCAATCAGATGCAAATGAGGTTTGGAGGGATTGACTTAAAGCAgcggctatttacactaagtgcaaatagcaattagatgttatttacactaaataaaaatggctttttttcttagcatagatgctatttacacaaAGTCCAAATAGAGATGGATCACAtgttggtgggcggagttagtgtaaatagccactGCCAACAAGACAGGCTATTTGCCcttattttaaatagacacTCTGTTAACTTAGGCGACAAGACAATCGTGAATTAAATCTTTCTCCCAACAGTACATTTCCAAACAATATTATGGTAGTCTGGCAATTCGATctagtaaagaaataaatattcgCAAACAAGGAATATTAACTTCTGCACTGTTGTTCAGCCGCAGTACAATCGGTAGCCCCGCCCCTCCTCCACTGTGATTGGTTGGTCGACTGAAAAGTGACAGTGATGAGTTGAACATTTTCAACTCTTggggcagagaaaaaaaattaacaatttaaaattttaagatttgagcattaattaaaacaatgcacaATGCTCGGCATATGTTCCTGGCGTTTTAAAAAACACGGTGCTCCCATTGAAAACAACTGAAGAAATATGTTAACTGCGGGAATTTTTTTACAACAGTGTATTacgtattttaaagaaaaccgttttttttatttaattttctttatttcttatttctcaTTTCCGGAAGTTTCTTTCAATGCAGTATTTCCAACTGAAATTGAATACTGAAGGGCGTGGGCGTGGTTTTATTTCAGCGATCCTTGGTTGGAGGGGCGTGGTTCACCCAAACCGTCCGACTGACGTAATCAGATAAGGAAATCCCATTCCAAGAAAATGTTCAGATTTTGCTTAAAGATTACCAATACCAGCAATGTGCTTCAACAAAGTAAACGGAGTCAACGGAGATAATTTTTCacttatttagatttaatttatttacaaaaaaaaaatatcaagctGCAGTGTAGCGTTGCTAAATCCGTGTTTTACGTAAACAACTCCAGGTTGCTTGTTTTTCTTGCGCGATCTGGCAACACCGATCAGCACCTCACTGCAACTGAACAGCGACCATATAAGCACATGTCTGCGTTAAGATTCTCTGCTGTTTTTCATTGGaggaatatatttaaaaaccacTGCGCTATATAATGTGGCAAGGGGCTTGCGTGCGCTGTGTTTGTTATTACTTCCATCACCATCTCTGTGTTCTTCAAAGATTTGCACAGGGTGTCTTCGCCACGGATGCAAGGGATGTAAGCACAcaaaggaaaaacacaaaattggtCCAGTGATGCCCACGACAGGCATTGCGTTTTTAAACGTAGCACCCGAGTTTGCATTGTAAATCAGATGCACTGAATCGCTGCTCTGCCGGATCCGTCTGCGTGTCGCTTCCCCTTTTCAGAAGGAGCCGCATCAACAAAATGTTGGGTAGGTCGATCACCTGGAGGAAATATAACCAGCGTACCCTCTCTATGCAGCACCGGCTCCCTCTTCGGCACTGACATGCCCGCGCCCAGCAAAAAAACCAGGATCAAAGGGCTCAGAGCTACAGCTGGACGCGTGAATCGGAAGAAGGACGGCGAACGGGCGCGCACCGGGTGTCCAAATCGGTGGAGGCCGGATCACATCTGCTGGGGACGAGCATCAAGGGCAGTGCGGCACTCCAGCGCTTCGGGAGCAGGCGACGCGGATCACCCATACACCCTCAGCTCCACGACAGCACCGCGTTCCCGTTGCACTTCTCCGTCGGTGTCAAAGATGCGCTAGAACAACGCACGCGCGCTctgaaatgcatcaaaacacGCCGACAGCGGACATGCTTTTCAGCGCTTTCACCCAAAGGATCTGTCGAGAATATACCGGGCTGGAAACGAAGACGAGGATCTGCCAGCGTTTCAGGGGATGCAAAAAGTGCCAATGAATATACTGCTCAAATACATCCTCCTTTTTCCGTCATTGGCCACATTGACACCCCTATAAGCAGGACCATGGGTTGCATTCAGAGCATCGCCTGCAAGCCCCGCATCCGACGGGAGAACATAGTGGTCTACGAGGTCTCAGCCTCCATTGACCAATGCCCGACCATCATTGAGGAAAACTCGCCCATCGTCCTGCGATACAAGACCCCGTACTTCAGAGCATCGGCCGGGATCGTGATGCCCCCGGTTCCCAGAAACGAAACATGGACCGTGGGCTGGATTCAGGCGTGCACCCAAATGGAGTTCTTCAACACGTATGGTGATATTGGCATGTCCAGCTGGGAATTACCAGAGCTTCGAGAAGGACGGGTGAAGGCCATAAGCGACTCTGACGGCGTGAGTTATCCCTGGTACGGTAACACCACCGAAACAGTGACCCTCTCAGGCCCCACGTCCAAGCCGTCCCGGTTAACGGTGGGCATGAACGACAACTTCTACCCCAGCGTGACTTGGGCGGTGCCCATCAGCAACAGCAACACGCCCATGCTCACGCACATCACCCGAGACCAGAGCTTCATCACCTGGCTGGTGGCGCTAAACGCAGACACCAAAGAGCGTATCGTTCTTCAGACGGTGCGCTGGCGTATGCGCGTAGACATTGAGGTGGATCCTTCCATGCCGCTTGGCTCTCGCGCCAAACTGATGGGACGGCCGCACCAGGAACAGCCACACATTCTCAGCAACAATGAGCCCATCCCGCCCAACGCTCTGGGCAGGCCCAATGCCAACGATGCCCAGGTGCTGATGTGGAGGCCCAGGAGAGGACAACCTCTGGTAGTGATACCGCCCAAATAGGGGTGTCTCAACAGTGCCTATGGGACATCGAAGACTGCATGTGCTGTATGGACGCTGGATTTTGGTATTGCCTTGTGGATTCCCAGTTTTGTTGGGTTTCTCAGTCGCTCTGAACTAGGAATTCTCCATGAGGTTTTGCTACCTTTAGACTTCAAAGTACTCGGTCAGACAGCAAATGATCAGGAGTAACTAGTACTAAATGAACCCAGTAggtttaaggaatagttcacagaaaaaaaaattgtttattttctttgttctgcagaacacaaaagaagatctGCGACCTTGGAGCActaaaccagtcataagggtcagttttttttaaaattgagatttactttatatttatttacgttATAAATAGACTTGCtattgatgtctggtttgttaggatagtgTGATATTTGGATGAAATACAACTATTTGacaatctggaatctgagggtgcaaaaaaaaaaaaaaaaaaaaaaatctaaatatttagaaaactgcctttaaagttgtccaaaagaACTTAATAGCATTGCATATAATACTAATGAAAAGTTAAGTTTCGATATATTAACAAtcaaaaatttacaaaatatctcgATATTTACTTAAACGCCTAATCATCTTTAgcatacaataaaaagaaataattttgacccatacaatgtattgatggctattgctacaaatatacctgtgctatttaagactggttttgtgcccCAGGTTTAcatattttgcagaatgttttggcggtttttgtccatacagtgaaaGCCAATGGGGTCCAAACATTTACACCTTGAAATATGACTTAAATGTAGCATAACTTTAATGAGTGCCACTCGACTGGTATGTTTCGA

Function

symbol description
fam78ba Is expressed in heart. Orthologous to human FAM78B (family with sequence similarity 78 member B).

NR:

description
PREDICTED: protein FAM78B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258538.1 True 3746 mRNA 0.44 2 2322711 2327443

Neighbor

gene id symbol gene type direction distance location
bcl6ab LOC107593779,LOC107681786,LOC107559367,LOC107709352,LOC107671762,LOC107719257 coding upstream 6608 2309537 ~ 2316103 (+)
LOC122326129 tctex1d1,LOC107709344,LOC107719283 coding upstream 29216 2291463 ~ 2293495 (+)
pde4bb pde4bb,LOC107719260,LOC107681771,LOC107593782,LOC107671696,LOC107559365,LOC108430746 coding upstream 57186 2213103 ~ 2265525 (+)
LOC122358163 leprot,LOC107754776,LOC107719262,LOC107681772,LOC107671671 coding upstream 113488 2205194 ~ 2209223 (+)
LOC122358154 LOC107681836,LOC107719284 coding upstream 144546 2173372 ~ 2178165 (+)
LOC122358767 tsen15,LOC107735630,LOC107681748 coding downstream 63435 2390878 ~ 2391452 (+)
LOC122358704 cmpk,cmpk1,LOC107719256,LOC107681787,LOC107671754,LOC107559368,LOC107709354 coding downstream 100114 2427557 ~ 2431457 (+)
LOC122360901 NA coding downstream 126407 2453850 ~ 2461222 (+)
LOC122360938 LOC107593781,LOC107719259,LOC107709351,LOC107671695,LOC107559342 coding downstream 168500 2495943 ~ 2510010 (+)
imp3 imp3,LOC107671714,LOC107681808 coding downstream 214472 2541915 ~ 2544563 (+)
G8716 NA non-coding upstream 1524 2288286 ~ 2321187 (+)
G8717 NA non-coding upstream 32671 2288825 ~ 2290040 (+)
G8703 NA non-coding upstream 69120 2249222 ~ 2253591 (+)
G8707 NA non-coding upstream 95460 2226905 ~ 2227251 (+)
G8706 NA non-coding upstream 100637 2221708 ~ 2222074 (+)
G8737 NA non-coding downstream 116145 2443588 ~ 2445200 (+)
G8724 NA non-coding downstream 184179 2511622 ~ 2609519 (+)
G8764 NA non-coding downstream 285079 2612522 ~ 2613104 (+)
G8794 NA non-coding downstream 491629 2819072 ~ 2872749 (+)
G8816 NA non-coding downstream 584848 2912291 ~ 2912787 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other upstream 34495 2270679 ~ 2288216 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other upstream 131263 2178766 ~ 2191448 (+)
arl14 arl14,LOC107722413,LOC107719289 other upstream 385952 1933512 ~ 1936759 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other upstream 412032 1903067 ~ 1910679 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other upstream 762937 1544773 ~ 1559774 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other downstream 71511 2398954 ~ 2401745 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other downstream 79299 2406742 ~ 2419955 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other downstream 220623 2548066 ~ 2555321 (+)
G8760 NA other downstream 264191 2591634 ~ 2592758 (+)
LOC122355548 NA other downstream 289764 2617207 ~ 2669943 (+)

Expression


Co-expression Network