LOC122358704 (cmpk,cmpk1,LOC107719256,LOC107681787,LOC107671754,LOC107559368,LOC107709354)


Basic Information

Item Value
gene id LOC122358704
gene name cmpk,cmpk1,LOC107719256,LOC107681787,LOC107671754,LOC107559368,LOC107709354
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2427557 ~ 2431457 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258550.1
GTACCCTGACTCTCGCAGGGTCGATGGTCATTCATTAGTGCAGCTCTATCTTATCAGCGCGGTTTATGATTGTGGCTTTGCTGCACAGGCTGTCGGAGAAGCTCCCACGCGTTGCGCACAGCTTGAGCGCGATGATGAAGCCgcaggttgtgtttgttttgggcGGGCCTGGCGCGGGGAAGGGGACGCAATGCGCGAGGATCGTGGAGAACTACAGCTACACTCACCTGTCTGCCGGAGACCTGCTGAGAGAGGAGCGCAGCCGACCCTCGGAGTTCGGTCAGCTCATCGACAGCTACATCAAAGAGGGCAAAATAGTTCCTGTTGAAATCACCATCAACTTGCTGAAAAAGGCGATGGAAGAGACCATGAAAGCCGACGAAAAGAAGTTCCGCTTTCTCATCGACGGGTTCCCGCGAAACCAAGACAACCTGCAGGGATGGAACACGGTGATGGATGGGAAGGCGGATGTCAAGTTTGTGCTCTTCTTCGACTGCAGTAATGAGGTTTGCATTGACAGATGTTTAGAGCGGGGGAAGAGCAGCGGGCGCACCGATGACAACAGAGAAAGCCTAGAAAAAAGGATCCAGACGTACCTCCAGTCAACACGGCCTATTATAGAGCAGTACGAGAAGCAGGGGAAAGTGCGCACGATCGACGCCTCTCGATCAGTGGATGaggtgTTTGGAGACGTGAAGAACATCCTGGAGAATGAAGGCTAAACGTCCACAGCAAAAATCCAAACTCTTGAAAATTAAGGTGTCTGTTTATTGTCGGGCAGCGCTTATgccttcatatatatatatatatatatacatttttactcatTCAACAGTaaaatagggttttttttaggcgtgagagagtgtgtgcttATACCTATGTTTGTGAGTCTGAAAGGAAAACACTTTTGCTGAGTGAGCGAAACGTTCTCAGCGTAGCATTACGCTGACGAGGGACAGTATTTCATTCGAAAATCGAGCATTTCGAGCGATGATGTTCAGGGCACTTCTGTAGTGAACACGCACGCTTCTGCTCTTAACTTCAGGATAATCTTCCACATTAAACACGATTCGAAATAAGCCAAGAATGTGTGGGAAAATTCTGCAGTCGCTATTGGCTCCTGCACTTAACCCTTTCTTTCTGTAACCTATAAATGACCAACGGGAAGAGTGCTTGAGTAGATCTCCAGACCTGTTTGTGTTATATTTGGTCACTTGTTTCTCATTGTTTTGTGTAGCAATCCACAGCAGGTTCTGAGGACCGTTTGCAGGCCAcccgagagagagagctgagtTTTAGctgcgtgttttttttgttttgttttatcatattGTGGCCGCCGTATTCCGAACACGTGCCATCTTTGCTCAGGCGGAGGATTTTAAGATGTGGGGAATGGGAGctcatgcttttatttgattgtcTCAGCATCTTGGTG

Function

symbol description
cmpk Predicted to enable UMP kinase activity; cytidylate kinase activity; and nucleoside diphosphate kinase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within 'de novo' pyrimidine nucleobase biosynthetic process; phosphorylation; and pyrimidine nucleotide biosynthetic process. Predicted to be active in cytoplasm and nucleus. Is expressed in neural plate and notochord. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CMPK1 (cytidine/uridine monophosphate kinase 1).
cmpk1 Enables nucleoside diphosphate kinase activity and nucleoside monophosphate kinase activity. Involved in nucleoside diphosphate phosphorylation and nucleoside triphosphate biosynthetic process. Located in nucleolus and nucleoplasm. Implicated in lung non-small cell carcinoma.

NR:

description
PREDICTED: UMP-CMP kinase

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K13800 CMPK1, UMPK; UMP-CMP kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258550.1 True 1441 mRNA 0.48 7 2427557 2431457

Neighbor

gene id symbol gene type direction distance location
LOC122358767 tsen15,LOC107735630,LOC107681748 coding upstream 36105 2390878 ~ 2391452 (+)
LOC122358683 fam78ba,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC105891364,LOC107102035,LOC101481240 coding upstream 100114 2322711 ~ 2327443 (+)
bcl6ab LOC107593779,LOC107681786,LOC107559367,LOC107709352,LOC107671762,LOC107719257 coding upstream 111454 2309537 ~ 2316103 (+)
LOC122326129 tctex1d1,LOC107709344,LOC107719283 coding upstream 134062 2291463 ~ 2293495 (+)
pde4bb pde4bb,LOC107719260,LOC107681771,LOC107593782,LOC107671696,LOC107559365,LOC108430746 coding upstream 162032 2213103 ~ 2265525 (+)
LOC122360901 NA coding downstream 22393 2453850 ~ 2461222 (+)
LOC122360938 LOC107593781,LOC107719259,LOC107709351,LOC107671695,LOC107559342 coding downstream 64486 2495943 ~ 2510010 (+)
imp3 imp3,LOC107671714,LOC107681808 coding downstream 110458 2541915 ~ 2544563 (+)
abi1b abi1b,LOC107671751,LOC107559371,LOC107681778 coding downstream 131720 2563177 ~ 2581265 (+)
ap2m1a ap2m1a,ap2m1b,ap2m1,LOC107671693,LOC107593770,LOC107709357,LOC107602122 coding downstream 167311 2598768 ~ 2606856 (+)
G8716 NA non-coding upstream 106370 2288286 ~ 2321187 (+)
G8717 NA non-coding upstream 137517 2288825 ~ 2290040 (+)
G8703 NA non-coding upstream 173966 2249222 ~ 2253591 (+)
G8707 NA non-coding upstream 200306 2226905 ~ 2227251 (+)
G8706 NA non-coding upstream 205483 2221708 ~ 2222074 (+)
G8737 NA non-coding downstream 12131 2443588 ~ 2445200 (+)
G8724 NA non-coding downstream 80165 2511622 ~ 2609519 (+)
G8764 NA non-coding downstream 181065 2612522 ~ 2613104 (+)
G8794 NA non-coding downstream 387615 2819072 ~ 2872749 (+)
G8816 NA non-coding downstream 480834 2912291 ~ 2912787 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other upstream 7602 2406742 ~ 2419955 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other upstream 25812 2398954 ~ 2401745 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other upstream 139341 2270679 ~ 2288216 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other upstream 236109 2178766 ~ 2191448 (+)
arl14 arl14,LOC107722413,LOC107719289 other upstream 490798 1933512 ~ 1936759 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other downstream 116609 2548066 ~ 2555321 (+)
G8760 NA other downstream 160177 2591634 ~ 2592758 (+)
LOC122355548 NA other downstream 185750 2617207 ~ 2669943 (+)
LOC122328998 NA other downstream 186545 2618002 ~ 2618134 (+)
LOC122329004 NA other downstream 186859 2618316 ~ 2618449 (+)

Expression


Co-expression Network