prdx1 (prdx1,LOC107577377,LOC107681736,LOC107560788,LOC108267618)


Basic Information

Item Value
gene id prdx1
gene name prdx1,LOC107577377,LOC107681736,LOC107560788,LOC108267618
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 1983241 ~ 1987091 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260666.1
ATTCCACCGAGCGTTTACTTCTCGAGGCAGCGGATCTCGCGGGGTATCGCGATGTTTGAGCGGGACCTATTTAAACGCAAAGGACTGCGCCGAGTTCACGCTCATTCATTGGCAGAGGCGCTCGGACTGTGAAGACTCTCCAGGCAGAAAATGGCAGCTGGAAATGCTCATATTGGCAAGCCTGCTCCAGACTTCACAGCCAAAGCTGTGATGCCAGATGGACAGTTTAAAGATCTCAGTTTGTCCGACTACAAAGGGAAGTATGTAGTGTTATTCTTCTATCCCCTGGATTTCACCTTTGTGTGCCCCACTGAGATCATCGCCTTCAGCGACGCAGTCGAGGAGTTCAGGAAAATCAACTGTGAAGTCATTGGTGCCTCTGTTGATTCCCACTTCTGCCATCTTGCCTGGATAAACACACCTCGGAAACAAGGCGGTTTAGGGCACATGAAAGTCCCTCTGGTGGCAGATTCTCTCCGCTCCATATCTCAAGACTACGGTGTACTTAAGGAAGATGAGGGTATTGCATACAGAGGACTTTTCATCATTGATGACAAGGGCATTCTGAGGCAGATAACCATCAACGATCTTCCAGTGGGCCGCTCCATCGACGAAACCCTGCGCTTGGTGCAGGCCTTTCAGTTCACCGACAAACATGGAGAAGTTTGCCCAGCCGGATGGAAGCCCGGAAAAGACACAATTAAGCCCGACGTCCAGCAGAGCAAAGACTACTTCTCCAAACAACAGTAAAAAACACACTAGACTGTGCAGCATAGTGTAATGGGCTTGTACAAGCACTGTTAACATGAAGTACTGCTACTAGTTAGCCTAGCACATCCATGTAGGAGTGGTATTGAAACTACCTGAAATGTATTGTAACATTGAGTTAGAATGTATAGTGTGCATCTTTTTAGACCTTTCCGTTGTGAAAAGCTGTTATACAGAGGGGACCAGCTTATTGTGTTGTCACATATTCTTgcatttcaaacaataaatatttttaaactataa
>XM_043260676.1
ACTGCGCCGAGTTCACGCTCATTCATTGGCAGAGGCGCTCGGACTGTGAAGACTCTCCAGGAAAATGGCAGCTGGAAATGCTCATATTGGCAAGCCTGCTCCAGACTTCACAGCCAAAGCTGTGATGCCAGATGGACAGTTTAAAGATCTCAGTTTGTCCGACTACAAAGGGAAGTATGTAGTGTTATTCTTCTATCCCCTGGATTTCACCTTTGTGTGCCCCACTGAGATCATCGCCTTCAGCGACGCAGTCGAGGAGTTCAGGAAAATCAACTGTGAAGTCATTGGTGCCTCTGTTGATTCCCACTTCTGCCATCTTGCCTGGATAAACACACCTCGGAAACAAGGCGGTTTAGGGCACATGAAAGTCCCTCTGGTGGCAGATTCTCTCCGCTCCATATCTCAAGACTACGGTGTACTTAAGGAAGATGAGGGTATTGCATACAGAGGACTTTTCATCATTGATGACAAGGGCATTCTGAGGCAGATAACCATCAACGATCTTCCAGTGGGCCGCTCCATCGACGAAACCCTGCGCTTGGTGCAGGCCTTTCAGTTCACCGACAAACATGGAGAAGTTTGCCCAGCCGGATGGAAGCCCGGAAAAGACACAATTAAGCCCGACGTCCAGCAGAGCAAAGACTACTTCTCCAAACAACAGTAAAAAACACACTAGACTGTGCAGCATAGTGTAATGGGCTTGTACAAGCACTGTTAACATGAAGTACTGCTACTAGTTAGCCTAGCACATCCATGTAGGAGTGGTATTGAAACTACCTGAAATGTATTGTAACATTGAGTTAGAATGTATAGTGTGCATCTTTTTAGACCTTTCCGTTGTGAAAAGCTGTTATACAGAGGGGACCAGCTTATTGTGTTGTCACATATTCTTgcatttcaaacaataaatatttttaaactataa

Function

symbol description
prdx1 Predicted to enable thioredoxin peroxidase activity. Acts upstream of or within leukocyte activation. Part of protein-containing complex. Is expressed in several structures, including diencephalon; digestive system; epidermis; lateral line; and otic vesicle. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblC. Orthologous to human PRDX1 (peroxiredoxin 1).

NR:

description
peroxiredoxin

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG:

id description
K13279 PRDX1; peroxiredoxin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260666.1 True 1011 mRNA 0.46 6 1983241 1987091
XM_043260676.1 False 925 mRNA 0.46 6 1983324 1987091

Neighbor

gene id symbol gene type direction distance location
ipo13a si:ch73-182a11.2,LOC107593890,LOC107681711,LOC107560786,LOC107722396 coding upstream 11758 1957176 ~ 1971483 (+)
ppm1la ppm1l,ppm1la,LOC107681725,LOC107722109,LOC107701333,LOC100694563,LOC103365160 coding upstream 50611 1923052 ~ 1932630 (+)
si:dkey-119f1.1 si:dkey-119f1.1,LOC107593797,LOC107701334,LOC107722422,LOC107560764 coding upstream 81494 1880691 ~ 1901747 (+)
rgs13 LOC107715509,LOC107593894,LOC107681737,LOC107560784,LOC107722654,LOC107701324 coding upstream 106355 1874022 ~ 1876886 (+)
rgs1 LOC107681696,LOC107560781,LOC107701325,LOC107722662 coding upstream 116050 1864505 ~ 1867191 (+)
zte38 zte38,LOC107681728,LOC107593889,LOC107719267,LOC107722624 coding downstream 238 1987329 ~ 1991484 (+)
uck2b uck2b,LOC107593786,LOC107719266,LOC107681732,LOC107560789,LOC107722061 coding downstream 10347 1997438 ~ 2001435 (+)
czib si:ch211-284b7.3,c7h1orf123,cunh1orf123,LOC107681739,LOC107719286,LOC107671679,LOC107722617,LOC103022465 coding downstream 15000 2002091 ~ 2004413 (+)
scp2a scp2,scp2a coding downstream 18105 2005196 ~ 2017031 (+)
LOC122357653 LOC107719275 coding downstream 51816 2038907 ~ 2052126 (+)
LOC122355709 LOC107593853,LOC107719278,LOC107681699 non-coding upstream 34879 1947128 ~ 1948362 (+)
LOC122362698 NA non-coding upstream 53674 1925860 ~ 1929567 (+)
G8586 NA non-coding upstream 61018 1919412 ~ 1922223 (+)
G8585 LOC107701323,LOC107593893,LOC107719279,LOC107560771,LOC107722646 non-coding upstream 63928 1918706 ~ 1919313 (+)
G8556 NA non-coding upstream 300148 1681427 ~ 1683093 (+)
G8670 tmem125b,LOC107681734,LOC107719290,LOC107593887 non-coding downstream 66220 2053311 ~ 2055730 (+)
G8691 NA non-coding downstream 183505 2170596 ~ 2170820 (+)
G8700 NA non-coding downstream 224662 2211753 ~ 2212073 (+)
G8701 NA non-coding downstream 225167 2212258 ~ 2212609 (+)
G8706 NA non-coding downstream 234617 2221708 ~ 2222074 (+)
arl14 arl14,LOC107722413,LOC107719289 other upstream 46482 1933512 ~ 1936759 (+)
LOC122360854 si:dkey-119f1.1,LOC107593796,LOC107715495,LOC107719281,LOC107701334,LOC107681697,LOC107593797,LOC108443183 other upstream 72562 1903067 ~ 1910679 (+)
rc3h1b LOC107681708,LOC107560775,LOC107722144 other upstream 423467 1544773 ~ 1559774 (+)
ccdc39 ccdc39,LOC107722234,LOC107701322,LOC107708988,LOC107568623 other upstream 574520 1397524 ~ 1408721 (+)
st6galnac5a st6galnac5a,LOC107681827,LOC107708707,LOC107599846,LOC107751866 other upstream 1154836 799932 ~ 828405 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other downstream 191675 2178766 ~ 2191448 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other downstream 283588 2270679 ~ 2288216 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other downstream 411863 2398954 ~ 2401745 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other downstream 419651 2406742 ~ 2419955 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other downstream 560975 2548066 ~ 2555321 (+)

Expression


Co-expression Network