prkacbb (prkacbb,LOC107600310,LOC107705125,LOC107660409,LOC108411205,LOC103034112,LOC106599750,LOC108267323)


Basic Information

Item Value
gene id prkacbb
gene name prkacbb,LOC107600310,LOC107705125,LOC107660409,LOC108411205,LOC103034112,LOC106599750,LOC108267323
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 4160156 ~ 4171747 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260728.1
ACACTTAATAACTCGTGCACGTGCCGTCCAGAGGCTGTTCTCCTTCGTGTCCAGCAGGGGGCAGTATGAAGCCTCCTTCTGCTCGCGACCGCCATGTCTCTCCCGCAGCAGAGGAAGATTAGTCTCAGCGAGTGAAGAGCGCTGTGAGAAAGTCAAGGGACTCCGCGCTCACCGTGGCGGAGCAGACCAGAGCTCGCAGGACCAACGCCGCCGAGGGATCCGTCCCGCCGCCGATTCCCCGGGCCGTAGACCGTCGAGTCGATCCGTGAGACAGGGCCGAGGCGCGGAGATCCGGAAGCCTCCTCCAAGGACTCGCCGTCGTCTGTAGCGCCGCGGAGAATCGCGCATTATGGGAAACGCAGCTACTGCCAAGAAAGGCAACGAACTGGAGAGCGAGACTTTTGTGAAAGAGTTTCTAGCCAAAGCCAAAGAAGAGTTCTTGAGAAAATGGGAATCGCCAccacagAGCACAACTGGTTTAGATGACTTCGACAGACTGAAGACGCTGGGCACGGGCTCTTTCGGGAGAGTCATGCTGGTCAAACACAAGGCCACAGATCAGTTCTATGCCATGAAGATTCTGGACAAACAAAAGGTGGTGAAGTTGAAACAAGTGGAGCATACGCTAAATGAGAAGAGAATATTACAAGCAGTATCCTTCCCGTTCCTCGTCAGATTGGAATACGCCTTTAAGGACAACTCTAACTTGTATATGGTGATGGAGTATGTACCAGGAGGAGAGATGTTCTCACATCTTAGAAGAATCGGAAGGTTTAGTGAACCACACGCACGGTTTTATGCTGCACAGATTGTCCTGACCTTTGAGTACCTCCACTCGCTAGACCTCATCTACAGAGACCTGAAACCTGAAAACCTACTCATTGACCAGCATGGATATATACAGGTAACAGACTTTGGTTTTGCAAAAAGAGTAAAAGGCAGAACCTGGACTTTATGTGGGACTCCAGAGTACTTGGCACCGGAGATCATCCTCAGCAAGGGATACAACAAGGCCGTGGACTGGTGGGCCCTTGGCGTTCTCATTTATGAAATGGCAGCTGGATACCCCCAATTTTTTGCAGACCAGCCTATTCAGATCTATGAGAAAATTGTGTCTGGAAAGgtacgATTCCCCTCGCACTTCAGTTCTGATCTGAAAGATCTGTTGAGGAATCTGCTGCAGGTGGACCTGACCAAACGCTACGGCAACCTGAGGAATGGAGTCAATGATATCAAAAACCACAAATGGTTTGCCACGACGGATTGGATAGCCATCTATGAGAGAAAGGTGGAGGCGCCGTTCATACCAAAGTGCCGAGGTCCTGGAGACACGAGCAACTTTGACGACTACGAAGAGGAAGACATTCGTGTATCTGTTACAGAAAAATGCGCAAAGGAGTTCTCCGAGTTTTAGTTACGGACACATCAAAGCTagacacatatgcatatatatatacatatatttacttatctatatgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcatcaCACAACACGTTCAAATAAGGGTATCTTTGCACTCTAAAGACATGGGATGAGCAGAGAGCACATCACCGTCAGAGTTCTTGTGTACTTCCTTCATTCCATTGGGCTTTAGAGGTCACCGGGGTTCTCATGCTCTTACCCATCATGCACCGGCACATCTCCTGCTCCTTCAGTTCACTCTCTTCTTGCTCCGTTTCGCTTCGTCACATGAGCCGTTCGACTTCGTGTTCcccatttaaaagcttttttttggcATTACAAATACGGACTCCGAGgggaaacacacaaacacaaacacaaacgcCAGTTCAGCATTGTTACTCCATGTTTATTTTCGGTGGCGGCGTCATACAGTGTTGCTGTTTAAAAGGTAATTATTGGCATTTTTGGTGTTACACGTCCATGtcgtttttaatttcttttcaccTTTAGACCAAAACAACTgacagcttttcttttcttcttttttttttggttacgtGTGCAAACCTgtcaaatagatttttatttaaaccacaTTGTGTGTTGAAAGCATGACCAAAACCATCGTGTTGTGAACGGCAGAGGAGGAGGTCTTAACTCTTGAGGTTTGCCTTAGAAACTCGGATGTTACGGAGCCCACAGAGTGATCGCATTACAGATGTTACAGTGATCTTTACATCACGATGTTACGGTGAAGGTCCAGTCTCATGCATATACTGACAGATGTTGTTAGCAATATAAAACATATCTTATTTTACcacttttgtgcatttttattcattatacaaAGGTTTTTGTTCTCAAATAGAagataaaaccttttaaagatCGTTTTAACCGTGCTGCGTTTAAGAAAAACAGCACACGCATTGGTGCGACCGCTATAGGAGGAGTTAGATCGTCACAGTGAGGCACTTATCAGTTACATATCAGGTCACCGGTTTTTGTCACCGTTTTTAATTTGTCGACGTTGAAGCCGTTTTGCGAAGTTCTCTCTTAACTGAAAATTGTAGAACTGCCAAAACTCCATGTTGTCTCCTCCATTGTTGCTGTTGAACTTCTGTCGTTCTTTTATTCTTGACCGAATGTAGTGTTGAAACTTCTAGATATGCATATCGTTTGACAAGTTTGAGTTTTGAGGTACATTCTCACAGACATATACTAAGAAACTGAATATGttacaaagaaagagagaaaaaaaaccgaGGTTAGTAAGCCTCTTCTCCTTTGTATCACCTATAATCCAGTTATTGTTCAGCTCATAATGCGTATATGCATTATttcttataaatgtttttatttatacacacattagAGAGATgctaataaattttatttttaa
>XM_043260737.1
ACTTAATAACTCGTGCACGTGCCGTCCAGAGGCTGTTCTCCTTCGTGTCCAGCAGGGGGCAGTATGAAGCCTCCTTCTGCTCGCGACCGCCATGTCTCTCCCGCAGCAGAGGAAGATTAGTCTCAGCGAGTGAAGAGCGCTGTGAGAAAGTCAAGGGACTCCGCGCTCACCGTGGCGGAGCAGACCAGAGCTCGCAGGACCAACGCCGCCGAGGGATCCGTCCCGCCGCCGATTCCCCGGGCCGTAGACCGTCGAGTCGATCCGTGAGACAGGGCCGAGGCGCGGAGATCCGGAAGCCTCCTCCAAGGACTCGCCGTCGTCTGTAGCGCCGCGGAGAATCGCGCATTATGGGAAACGCAGCTACTGCCAAGAAAGGCAACGAACTGGAGAGCGTGAAAGAGTTTCTAGCCAAAGCCAAAGAAGAGTTCTTGAGAAAATGGGAATCGCCAccacagAGCACAACTGGTTTAGATGACTTCGACAGACTGAAGACGCTGGGCACGGGCTCTTTCGGGAGAGTCATGCTGGTCAAACACAAGGCCACAGATCAGTTCTATGCCATGAAGATTCTGGACAAACAAAAGGTGGTGAAGTTGAAACAAGTGGAGCATACGCTAAATGAGAAGAGAATATTACAAGCAGTATCCTTCCCGTTCCTCGTCAGATTGGAATACGCCTTTAAGGACAACTCTAACTTGTATATGGTGATGGAGTATGTACCAGGAGGAGAGATGTTCTCACATCTTAGAAGAATCGGAAGGTTTAGTGAACCACACGCACGGTTTTATGCTGCACAGATTGTCCTGACCTTTGAGTACCTCCACTCGCTAGACCTCATCTACAGAGACCTGAAACCTGAAAACCTACTCATTGACCAGCATGGATATATACAGGTAACAGACTTTGGTTTTGCAAAAAGAGTAAAAGGCAGAACCTGGACTTTATGTGGGACTCCAGAGTACTTGGCACCGGAGATCATCCTCAGCAAGGGATACAACAAGGCCGTGGACTGGTGGGCCCTTGGCGTTCTCATTTATGAAATGGCAGCTGGATACCCCCAATTTTTTGCAGACCAGCCTATTCAGATCTATGAGAAAATTGTGTCTGGAAAGgtacgATTCCCCTCGCACTTCAGTTCTGATCTGAAAGATCTGTTGAGGAATCTGCTGCAGGTGGACCTGACCAAACGCTACGGCAACCTGAGGAATGGAGTCAATGATATCAAAAACCACAAATGGTTTGCCACGACGGATTGGATAGCCATCTATGAGAGAAAGGTGGAGGCGCCGTTCATACCAAAGTGCCGAGGTCCTGGAGACACGAGCAACTTTGACGACTACGAAGAGGAAGACATTCGTGTATCTGTTACAGAAAAATGCGCAAAGGAGTTCTCCGAGTTTTAGTTACGGACACATCAAAGCTagacacatatgcatatatatatacatatatttacttatctatatgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgcatcaCACAACACGTTCAAATAAGGGTATCTTTGCACTCTAAAGACATGGGATGAGCAGAGAGCACATCACCGTCAGAGTTCTTGTGTACTTCCTTCATTCCATTGGGCTTTAGAGGTCACCGGGGTTCTCATGCTCTTACCCATCATGCACCGGCACATCTCCTGCTCCTTCAGTTCACTCTCTTCTTGCTCCGTTTCGCTTCGTCACATGAGCCGTTCGACTTCGTGTTCcccatttaaaagcttttttttggcATTACAAATACGGACTCCGAGgggaaacacacaaacacaaacacaaacgcCAGTTCAGCATTGTTACTCCATGTTTATTTTCGGTGGCGGCGTCATACAGTGTTGCTGTTTAAAAGGTAATTATTGGCATTTTTGGTGTTACACGTCCATGtcgtttttaatttcttttcaccTTTAGACCAAAACAACTgacagcttttcttttcttcttttttttttggttacgtGTGCAAACCTgtcaaatagatttttatttaaaccacaTTGTGTGTTGAAAGCATGACCAAAACCATCGTGTTGTGAACGGCAGAGGAGGAGGTCTTAACTCTTGAGGTTTGCCTTAGAAACTCGGATGTTACGGAGCCCACAGAGTGATCGCATTACAGATGTTACAGTGATCTTTACATCACGATGTTACGGTGAAGGTCCAGTCTCATGCATATACTGACAGATGTTGTTAGCAATATAAAACATATCTTATTTTACcacttttgtgcatttttattcattatacaaAGGTTTTTGTTCTCAAATAGAagataaaaccttttaaagatCGTTTTAACCGTGCTGCGTTTAAGAAAAACAGCACACGCATTGGTGCGACCGCTATAGGAGGAGTTAGATCGTCACAGTGAGGCACTTATCAGTTACATATCAGGTCACCGGTTTTTGTCACCGTTTTTAATTTGTCGACGTTGAAGCCGTTTTGCGAAGTTCTCTCTTAACTGAAAATTGTAGAACTGCCAAAACTCCATGTTGTCTCCTCCATTGTTGCTGTTGAACTTCTGTCGTTCTTTTATTCTTGACCGAATGTAGTGTTGAAACTTCTAGATATGCATATCGTTTGACAAGTTTGAGTTTTGAGGTACATTCTCACAGACATATACTAAGAAACTGAATATGttacaaagaaagagagaaaaaaaaccgaGGTTAGTAAGCCTCTTCTCCTTTGTATCACCTATAATCCAGTTATTGTTCAGCTCATAATGCGTATATGCATTATttcttataaatgtttttatttatacacacattagAGAGATgctaataaattttatttttaa

Function

symbol description
prkacbb Predicted to enable AMP-activated protein kinase activity; ATP binding activity; and cAMP-dependent protein kinase activity. Predicted to be involved in protein kinase A signaling. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in nucleus. Is expressed in brain; fin bud; otic vesicle; and retina. Orthologous to human PRKACB (protein kinase cAMP-activated catalytic subunit beta).

NR:

description
PREDICTED: cAMP-dependent protein kinase catalytic subunit beta isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04345 PKA; protein kinase A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260728.1 True 2840 mRNA 0.44 11 4160156 4171747
XM_043260737.1 False 2829 mRNA 0.44 10 4160158 4171747

Neighbor

gene id symbol gene type direction distance location
LOC122323258 LOC107660407,LOC107671708,LOC107705103,LOC107562845 coding upstream 10369 4054024 ~ 4149787 (+)
tubb2 LOC101473957,LOC100702414,LOC107660405,LOC108239677,LOC103371147 coding upstream 162430 3993391 ~ 3997726 (+)
slc22a23 LOC107705121,LOC107660403,LOC107708605,LOC107671742,LOC107573857 coding upstream 168613 3951283 ~ 3991543 (+)
pth1r pth1r,pth1ra,LOC107660418,LOC107671674 coding upstream 284430 3813313 ~ 3875726 (+)
usp14 usp14,LOC107660400,LOC107711695,LOC107671702,LOC107727520,LOC102778130 coding upstream 495764 3658015 ~ 3664392 (+)
LOC122361024 dab1,c8b,LOC107671700,LOC107562846 coding downstream 7707 4179454 ~ 4217008 (+)
si:ch211-188c16.1 LOC107708601,LOC107562847 coding downstream 52977 4224724 ~ 4232354 (+)
gpaa1 gpaa1,LOC107671733,LOC107693589 coding downstream 60912 4232659 ~ 4241076 (+)
rpe65a rpe65a,rpe65,LOC107705134,LOC107708597,LOC107693590,LOC108436856 coding downstream 71361 4243108 ~ 4249001 (+)
ss18 ss18,LOC107671692,LOC107671559 coding downstream 116271 4288018 ~ 4295033 (+)
G9304 NA non-coding upstream 99180 4015450 ~ 4060976 (+)
G9302 LOC107600331,LOC107705102 non-coding upstream 138840 4013106 ~ 4021316 (+)
G9305 NA non-coding upstream 140441 4019339 ~ 4019715 (+)
G9241 NA non-coding upstream 243673 3886082 ~ 3916483 (+)
G9235 NA non-coding upstream 374861 3784917 ~ 3785295 (+)
G9362 NA non-coding downstream 51844 4223591 ~ 4224111 (+)
G9356 LOC107600323,LOC107671560,LOC107705133 non-coding downstream 89021 4260768 ~ 4266016 (+)
G9379 NA non-coding downstream 207829 4379576 ~ 4379832 (+)
G9382 LOC107671550,LOC107705116,LOC107671683,LOC107562856,LOC107708586,LOC107565517 non-coding downstream 215180 4386927 ~ 4387444 (+)
G9391 rpb4,polr2d,LOC106612892 non-coding downstream 287346 4459093 ~ 4462842 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other upstream 369817 3756171 ~ 3790339 (+)
G9173 NA other upstream 481222 3676425 ~ 3678934 (+)
G9154 rock1,LOC107671690 other upstream 543113 3615482 ~ 3617043 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 995333 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 1420249 2729636 ~ 2739907 (+)
G9361 NA other downstream 50492 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 392150 4563897 ~ 4570094 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other downstream 401198 4572945 ~ 4589827 (+)
LOC122361055 LOC107565287,LOC107667819 other downstream 726625 4898372 ~ 4899380 (+)
LOC122355892 foxc1,foxc1a,LOC107745890,LOC107576425,LOC107726170,LOC107563085,LOC105019236 other downstream 737382 4909129 ~ 4911176 (+)

Expression


Co-expression Network