LOC122360938 (LOC107593781,LOC107719259,LOC107709351,LOC107671695,LOC107559342)


Basic Information

Item Value
gene id LOC122360938
gene name LOC107593781,LOC107719259,LOC107709351,LOC107671695,LOC107559342
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 2495943 ~ 2510010 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261780.1
TTAACAGGACTGAAAAAGCGTACCCGAAAGGCCTTCGGGATACGGAAGAAAGAAAAGGACAGTGACTCCACTGGATCCCCAGACAAAGAAAAATCTAAAAAAGCCAATGGTGCACCGAATGGTTTCTACGGTGAGATCGACTGGGATCGTTATAACTCTCCTGATGTTGACGATGAGGGTTACAGCGTTAAACCCGGAGAACAAGGAGGAACAGCTCCAAAAGTCAAGACGTTCTTCTCCTCCAGTGAGTCggagggagaggaggagcaCGGAAAGAAATTTAAGATCAAGATCAAACCTTTGACAGCAAACAGTGGAAACTGTACAGTGTCTACTATGGATGAGCTGAAGGCCTCAGTGGGGACGCTGGCCATCTCTCCTTCTCCTCTGGTTAGTCTCGCTAGAAAGAGTCCGTGCCCGATGAAGCGAAACCTGTCAAATGAGGAGATCGCCAGACCACGACGATCTACTCCAACACCCACGACAACTCCAGGACCTGGTTCGGACCCGCCCAGagaaaacacaacagCGTTCTTCGGCCCACCGTTTGAGACCAATTTCGAAGCACACAACTCAGAAGTGTTCCCGGTTGAGCCGGAGCTCTGGTGTCAGTCCACTTCTCTCTCCACCTGTGTTCTCAGCAGATCTCTGCCCACTGGAGCTCCGCCTCCACTTCCTCCAAAGAACATTCCTGTGACCCCACCTGGACGCAGTTCTAGCTCTGTAGAGTCCTCCGgTTATTATAGTGTGGTTCCTAGCATCAGAGGAGAGGGATCAGCTTCGGCCTGTCAGGACGCCCCATTATCTGACCCATCCGGAGGGGCGTCTATGCCTGACTTGGACAGTGTTTTTGGGCCTGTGGAGACGCCCAGGTCTGCATCAGATGTGGTGCAGTGCAGCTGGGTGAGCTTCAGCGAAGGCTCTCCCGCCAGACCCCCTCCCCCAGACGAACCCGCCCCTTCTCCGCCTCTGTCTTCTTCCCCCACGGACTCGCCCCCAACCTCGCCCCTCAACCTGCCGCCTCCCGCCTCCCCGCCTCCCCCCCTCCACTCCATCCCGCCTCCAGATTcacctccaccacctccacccTCGGACTCTCCTCTGAATTcacctccaccacctccacccTCGGACTCTCCTCTGAGTCCTCCAGACCTCCCCTGCTGCTTTCAGCTCCCGGAGTCCGAGCTCACCCAAGAGTCCCCAATGACCCCCGCCAGCCCCGGACTGCCCTTCCCGCCAGCAGACCACCATCCTCATGGAGCCATACCTTCCCCTCTTACCTTGAGAGACGACAGCAGGAGAACCCCTGACCTGGTGGGCATGAGGGATGAGATTTCTGTGTTTGGCACATCACCCAAAGACCTCGCAGCAGGAAGCTTCAGAGGAACCCCACCTCCTCTGCCACCTCCTACTTACAGGAGTGTGGTGGGCTCCCCGGGGCCCGGCAGTGGGCCGTCGTCTCCCGCACGTGCCGGCACTCCGCTGTCCGCTGGGAGTCCGATCCCACCTCTACCACCAAGACCATCGTCACGACCTAAACTACCACCTGGAAAACCAAACCTAGCAGATCTGGCCCGACCCTTCAGCCCCCCCATCCACTCGTGGAGTCCTCCACCCTTTGCTCCTCTGGCCAGAGCCGAAAGCAcctcctccatctcctccgtCACCTCTCTGAGCGCAGCCTCCACACCTACACTAGGCCGAGAGCTCAACCTCTCTGTGTCAGTATGCTCCAGAGGTCCGAGTCCTCTCACAATGGGTCCCCAGGACACTCTACCGGTGGCAGCCGCCTTCACAGAGACCATCAGCGCTTACTTTAAAGGAGCAGATCCCACTAAGTGTTTGGTGAAGATCGCCGGTGAGATGGTGTTGTCTTTCCCAGCAGGGATCACCAGACACTTCTCCACCCATCCCAGTCCACCGGTGCTGACCTTCACCATCAGTCAGTACAGTCGACTGGAGCAGGTCCTTCCCAACCCACAGCTTCTGTGCTGCGACACCACGCCACCTACAGGTGATTCAAAGGAGTTCTGGGTCAACATGTCAAACCTGTTGAGTCACCTGAAGAAGGTGGCTGAGCAGAGGCCACAGGCCACGTACTACAACGTAGACATGCTGAAGTACCAGGTGTCCACTCGAGGCATCCAGTCCACTCCGCTGAACCTGGCGGTGAGCTGGCGGGGTGATGCCTGCAGCACAGACCTCAGGATAGACTATAAATACAACACGGAGGCCATGCCCATACCCACACCGCTCACCAACATCCACTTCATGGCAGCTGTGGACGGCGGCGTGAACAAACTGCAGGCTATGCTCCCACTTGCCCACTGGAACCCGGAGGAGCAGAACATAATGTGGAAGATCCCAGAGCTCTCACAGAGGTCTGAAAATGGAGGCGTGGGCGCTCTTCTGGCTCGCTTCCGGTTAGCCGAGGGTCCCAGCAGACCTTCTCAGCTGGCAGTGCAGTTCACCAGTGAGGGCAGCACTCTGTCTGGATGCGATTTTCAACTCGTCGGTTCAGGCTACAGACTCTCTTTGgtcaaaaaaaggttttctgcAGGTAAATATCTGGCAGACAACTGACATGTAGGATGGACTGCGAGTGGGGATGCTCTTTTGGCACTACAAAGActttggaaaaatgtttttattgaaatacagCACTCAAAATCTCACGTATAATGTCTGGTGTAGAATATCATCAGTGCGttctgtgggtgtgtgtatgtgaatatcagtaaatattttgtgtgtgtatatgataaAACTTCAGGACAAATGCAATACGTGGACTTTTTTCGCTGGGTTCTTGCAGAAGGCAGAGTTTCTTTTTTCACTATTGCACATTTTCTCTCTGCCCCAAACCAAACACACCTAGTGACATTACAATCTAATAACACCAGG

Function

NR:

description
PREDICTED: SH3-containing GRB2-like protein 3-interacting protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261780.1 True 2907 mRNA 0.55 22 2495943 2510010

Neighbor

gene id symbol gene type direction distance location
LOC122360901 NA coding upstream 34721 2453850 ~ 2461222 (+)
LOC122358704 cmpk,cmpk1,LOC107719256,LOC107681787,LOC107671754,LOC107559368,LOC107709354 coding upstream 64486 2427557 ~ 2431457 (+)
LOC122358767 tsen15,LOC107735630,LOC107681748 coding upstream 104491 2390878 ~ 2391452 (+)
LOC122358683 fam78ba,LOC107593884,LOC107681754,LOC107709346,LOC107671676,LOC105891364,LOC107102035,LOC101481240 coding upstream 168500 2322711 ~ 2327443 (+)
bcl6ab LOC107593779,LOC107681786,LOC107559367,LOC107709352,LOC107671762,LOC107719257 coding upstream 179840 2309537 ~ 2316103 (+)
imp3 imp3,LOC107671714,LOC107681808 coding downstream 31905 2541915 ~ 2544563 (+)
abi1b abi1b,LOC107671751,LOC107559371,LOC107681778 coding downstream 53167 2563177 ~ 2581265 (+)
ap2m1a ap2m1a,ap2m1b,ap2m1,LOC107671693,LOC107593770,LOC107709357,LOC107602122 coding downstream 88758 2598768 ~ 2606856 (+)
dvl3a dvl3a,LOC107681796,LOC107671749,LOC107559372,LOC108430757 coding downstream 110832 2620842 ~ 2632556 (+)
LOC122328513 LOC107727546,LOC107671763,LOC107559376,LOC107709337 coding downstream 134985 2644995 ~ 2657785 (+)
G8737 NA non-coding upstream 50743 2443588 ~ 2445200 (+)
G8716 NA non-coding upstream 174756 2288286 ~ 2321187 (+)
G8717 NA non-coding upstream 205903 2288825 ~ 2290040 (+)
G8703 NA non-coding upstream 242352 2249222 ~ 2253591 (+)
G8707 NA non-coding upstream 268692 2226905 ~ 2227251 (+)
G8724 NA non-coding downstream 1612 2511622 ~ 2609519 (+)
G8764 NA non-coding downstream 102512 2612522 ~ 2613104 (+)
G8794 NA non-coding downstream 309062 2819072 ~ 2872749 (+)
G8816 NA non-coding downstream 402281 2912291 ~ 2912787 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding downstream 606838 3116848 ~ 3121053 (+)
LOC122358652 slc35a3b,LOC107559354,LOC107593843,LOC107671667,LOC107709347 other upstream 75988 2406742 ~ 2419955 (+)
G8725 sec22ba,LOC107681807,LOC107727533,LOC107709355,LOC107671713,LOC107559355,LOC105891393 other upstream 94198 2398954 ~ 2401745 (+)
sgip1b sgip1b,LOC107719259,LOC107593781,LOC107709351,LOC107671695,LOC107559342,LOC107681818,LOC108430747 other upstream 207727 2270679 ~ 2288216 (+)
LOC122358138 LOC107593886,LOC107719261,LOC107671769,LOC107559363,LOC107754779,LOC107681703,LOC106568718 other upstream 304495 2178766 ~ 2191448 (+)
arl14 arl14,LOC107722413,LOC107719289 other upstream 559184 1933512 ~ 1936759 (+)
zgc:55943 zgc:55943,LOC107727521,LOC107671715,LOC107709356,LOC107559369,LOC107593773,LOC108430752 other downstream 38056 2548066 ~ 2555321 (+)
G8760 NA other downstream 81624 2591634 ~ 2592758 (+)
LOC122355548 NA other downstream 107197 2617207 ~ 2669943 (+)
LOC122328998 NA other downstream 107992 2618002 ~ 2618134 (+)
LOC122329004 NA other downstream 108306 2618316 ~ 2618449 (+)

Expression


Co-expression Network