LOC122361595 (LOC107710620)


Basic Information

Item Value
gene id LOC122361595
gene name LOC107710620
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 8830820 ~ 8841734 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043262402.1
TAGCAACAAGTAAGCATGCGGCCAGAACGGGCTGGAGAAACTCTCAACAGGACATgaggatagagagagagagggttagAAGGGGAGTGAAAGAGGATTGAAGCCGTCCCCTCCTCAACACACTCACAATGTTCAGTGTTATATACTTCATACGAAGCTTCTTTAAGGCCCCAGCTTTAGAGGACTCTGGGAGTGAGGCAGGCTGTCTTGAGGATGAGGAGCATGGAGAGCAGCAGGACCATCAGGAATGGTGTGAGCCGGTTCCTGAAGCAGCAGAGGAGACAAAAGAAGAATATTTCAACCCACATTCACGGCACAGTGACACTTTCTCTGGCTCGAGTCATGAAACTGAGGACTACTGCAGGATACCGCTCAGCTCTATGGGTCATCTGGACTCACATTCACTTTCGGTTAGAAGGAGAGATCCCTTTTCATCAAGGCAGCATCATTCTGTCAATTATGCTGACAGTTTTAATAGAACAGTGGATAGAGAACAATTGGAAAAGCAGACTGAAAACATGGGAATGATGCGCATGGGAGTTGATGGCACTGGAATGTCTCAAGCTAAGGGTGCTCTGGAATGTGAGGAGGTTTTCAGCAAATTTCCAGCAGGACCTGGAGTTGATTTTTCTTCAAGGAATGACCAATCCTACGTAGTAACACCCTCACTGGCATTAGAAAATGCTGTAGAACCACAAACACTCACTGAGCCATCCGCTAATGACTCATTATTGACCTTAACAGACAGTGATGGAGCCAAGTCTCAGTTTGCTGACACCTTTGAGGGAAGATCGAAATGGGatcaaattaacaaaaatataacagacACTCAGTCAGCACACAATGAGCCACAGGTACAGATCATAACCTCAAGTGAGAAGCGTTACAGCAAAATTATATTGACAGTAGTAACACTGAAATACAGTTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107710620 isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043262402.1 True 929 mRNA 0.45 2 8830820 8841734

Neighbor

gene id symbol gene type direction distance location
amer3 LOC107710619,LOC107700565,LOC107677756,LOC107732953,LOC107553265,LOC107569737 coding upstream 168497 8651917 ~ 8662323 (+)
atr atr,LOC107677746,LOC107700496 coding upstream 179274 8630412 ~ 8651546 (+)
atp1b3a atp1b3a,LOC107700561,LOC107563307,LOC107710617,LOC107732952,LOC107677716,LOC107553263 coding upstream 231225 8590241 ~ 8599595 (+)
clcn2a clcn2,clcn2a,LOC107732945,LOC107710554,LOC107677884 coding upstream 343916 8439879 ~ 8486904 (+)
cc2d1b LOC107563292,LOC107710553,LOC107700553,LOC107677533 coding upstream 427606 8386877 ~ 8403214 (+)
LOC122359011 arhgef4,LOC107700563,LOC107710620,LOC107553266,LOC107732940 coding downstream 6593 8848327 ~ 8878100 (+)
vav3b vav3b,LOC107700567,LOC107732951,LOC107677852,LOC107553269 coding downstream 49039 8890773 ~ 8929310 (+)
col11a1b col11a1b,LOC107680048,LOC107594685,LOC107710593,LOC107564536,LOC107700498,LOC107745694 coding downstream 245960 9087694 ~ 9154434 (+)
tecrl2b tecrl2b,LOC107564537,LOC107745691 coding downstream 332119 9173853 ~ 9180307 (+)
abcd3b abcd3b,abcd3,LOC107564533,LOC107730494,LOC107680052,LOC106590647 coding downstream 397898 9239632 ~ 9248291 (+)
G10371 NA non-coding upstream 31824 8798591 ~ 8798996 (+)
LOC122356731 NA non-coding upstream 65369 8762839 ~ 8765451 (+)
G10284 LOC107710615 non-coding upstream 241746 8587377 ~ 8589074 (+)
G10271 NA non-coding upstream 269307 8560098 ~ 8561513 (+)
G10226 NA non-coding upstream 302113 8522402 ~ 8528707 (+)
G10374 NA non-coding downstream 38208 8879942 ~ 8880453 (+)
G10431 NA non-coding downstream 87770 8929504 ~ 8930073 (+)
G10433 NA non-coding downstream 98235 8939969 ~ 8941186 (+)
G10445 NA non-coding downstream 213989 9055723 ~ 9056245 (+)
G10446 amy2a,LOC107700520,LOC107594668,LOC105896008 non-coding downstream 215356 9057090 ~ 9057859 (+)
G10212 NA other upstream 723043 8106865 ~ 8107777 (+)
G10108 NA other upstream 1248435 7504622 ~ 7582385 (+)
gng12a gng12a,LOC107700509,LOC107716954,LOC107551713 other upstream 1530719 7285670 ~ 7300101 (+)
lrrc53 LOC107700485,LOC107588905,LOC107716924 other upstream 1725028 7098303 ~ 7105792 (+)
G9925 LOC107563058,LOC107549254 other upstream 1843701 6986298 ~ 6987119 (+)
olfm3b olfm3b,LOC107700521,LOC107710604,LOC107745696,LOC107680049 other downstream 320877 9162611 ~ 9171915 (+)
arpc5a arpc5a,arpc5,LOC107722639,LOC107693740,LOC107564704,LOC107677751,LOC107718183 other downstream 904836 9746570 ~ 9751212 (+)
znf414 LOC107722538,LOC107564712,LOC107693731,LOC107691619,LOC107718126 other downstream 1069894 9911628 ~ 9916861 (+)
selenof selenof,sep15,LOC107693704,LOC106598901 other downstream 1316798 10158532 ~ 10161809 (+)
lyrm4 lyrm4,LOC107718092,LOC107688446,LOC107722638,LOC107689406,LOC107688520 other downstream 1820995 10662729 ~ 10665110 (+)

Expression


Co-expression Network