snap47 (snap47,LOC107661893,LOC107727535,LOC107671760,LOC107711707,LOC107558015)


Basic Information

Item Value
gene id snap47
gene name snap47,LOC107661893,LOC107727535,LOC107671760,LOC107711707,LOC107558015
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3343658 ~ 3351584 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263682.1
TAAAACAATCACCGCTGCGTTCAGTCTTTGGTTCGGCTGTATTTACATCGCCAAGACGCTATAGGGAAACagagtcagatttttttttacattttttatttaaggaTTTGCATTAACCGTTAAGGGAAACACCGAGGCGGTAAATGTATCGCAACTGATCGCGATGCTTAGagatgttattattttaatgcgtGAAGTACGTCACACCCTTCTGTAGCTGTCACTTGAAAGTCAACATCCTCTAAAAGGTGAGCTCCCTTAGTCAGGGCAGCTGTGCCAAATCATCAGAGAAAGATGAGCCACGAGGCATCCATCCATACCTGGCCCGGCTCTTATTACATCAACAGCGGGAAACGCTGGGCCAGCGGCATCCTCTTCTTAACTCGCACCACCCTACGCTTCAACTCCGAGCAGAATCAGGAGAATCTGGTTAGCCTGAGGCTCTCGCGCATCATGGAGATCAAGATGGAGTCGTCCAGCTTCATTTTTAGTGCTCTTACCGTGTTGGAGCAGGGAAACGTCAAGCACTGGTTTGGGTCTCTCAAGCCTTGCCGTACCGCCGTTTACCATGTGCTAGAGCACTTCTGGAGGGAACGGCTGCTGTCTCCCACGGAGCCCCGCGGAGCCGAAGCTCCTCTCAGTAAGGGCCAGGAGCTGATCAGCCTGATTTCCGGGACCCAGCGGAGGCTGGAGGATACTGGAAAAGTCCTGAACCACCAGGGAGAGCAGTTTGACAACATGATCCAGGGCCTGGACAAGATCGAGTCGGACCTGAGCGTGGCAGATAAACTTCTCTCTGAACTTGAGTGTCCTTCTTGGTGGCCTTTTGGCAAACTTCCATGGAAGAGCCATCAGGAAGCCAAGTCTGAGGCAGCGGCCAAAGCGGCCTGTACTAAAGGATCAGCCAAGGGCCAAAGAGTCATAACTAGCATTCCGGCTATAGTTTCCCGTGTTGGGAGCTCTGGAGCCATGAAACCAGGTAGCCTGATAGTGTTGATCTCCTCTCTGGAGGTTCGAGATGCAAACGGACAGCTCCTCCATTGCTTCGAGAAGGAAGAGGTGGATGATATCTATGTGCACAGCCCCTACGAGATCAGTGTCCGGCAGCGCTTCATCGGAAAACCTGACATCTGTTTCCGAATTCTCTCTGCCAGGATGACTGAAGCTTTATCTGTACTGGAGATGCAGTATAAGAAGAAAGTTGAGATCACGCGTGACTATGCAGCATTTCAGGCAACTTCGGCAACCACTCCAGGAAGCCCAGAAGGCGGAGGAAGCATTTGGAGTGCAGGTCACGGGCAGGACACGGAGGTGCCCGTGGAGGTGCCTGCTGGTGAACTCACACAACTGCAGCTTCATGTGCTTCAGCCCACTGTGACCGAGGCAGAGGCACAGGAGCTAAAACAGATGCTCCAGCAGCTGAAGAACCTAGCCCTGGAGGCTGAGACCGAGCTGGAGCGTCAAGACGAGGCTCTGGATGAACTGAGCTGCTCCGCTGACCGCACCACCATGAACATTAACAGACACACTCGCCGCATGAGGAAACTACTGTGAACTTACTGTCACCAGATTAATGGTCCACATAGATCTGCAACCAGTGTCATTTTGCATGGCTTAGCAACCTTCAACCCGCTGCAAGGAAACAAATGAACTACGGCGTAATTTAAACACTGTAATCAATTTACCGTTGTTGTGTATTTTGTGAAAATTTCACAAGATTCTGTACGTTGTCAACCCTTTGACAGTAATGCACTCTATCAAATCCTGCTTGATCGTCATTGTTTAATGtgtagtaatttttttaaaagttactttGTTGATAAGTgtaaaataagtgtaaaataaaCTCAGATGCTCTTTATTGTCA

Function

symbol description
snap47 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human SNAP47 (synaptosome associated protein 47).

NR:

description
synaptosomal-associated protein 47-like isoform X2

GO:

id name namespace
GO:0031083 BLOC-1 complex cellular_component

KEGG:

id description
K18212 SNAP47; synaptosomal-associated protein 47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263682.1 True 1867 mRNA 0.49 6 3343658 3351584

Neighbor

gene id symbol gene type direction distance location
iba57 iba57,LOC107727502,LOC107593877 coding upstream 3684 3336399 ~ 3339974 (+)
gjc2 LOC107661908,LOC107727543,LOC107711690,LOC107671673,LOC107558016,LOC107593878 coding upstream 10653 3313001 ~ 3333005 (+)
LOC122324044 cyp8b1,cyp8b3,LOC107727542,LOC107661909,LOC107558014,LOC107593879,LOC107711691,LOC107671665 coding upstream 30807 3310936 ~ 3312851 (+)
LOC122355375 LOC107727511,LOC107593880,LOC107711692,LOC107671684,LOC107661913 coding upstream 35360 3306262 ~ 3308298 (+)
abhd3 abhd3,LOC107727531,LOC107671728,LOC107711708,LOC107661904 coding upstream 90534 3235234 ~ 3253124 (+)
wnt3a wnt3a,LOC107727506,LOC107558010,LOC107661901 coding downstream 109143 3460727 ~ 3481179 (+)
arf1 arf1,LOC103038497,LOC107671731,LOC107727518 coding downstream 147996 3499580 ~ 3504255 (+)
guk1a LOC107727516,LOC107711703,LOC107593754,LOC107661890,LOC107574785 coding downstream 161305 3512889 ~ 3522776 (+)
zyg11l LOC107671664,LOC107574786,LOC107711672 coding downstream 198651 3550235 ~ 3562870 (+)
serbp1b serbp1b,LOC107660393,LOC107567863,LOC107671652 coding downstream 224072 3575656 ~ 3584040 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 222605 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 430871 2912291 ~ 2912787 (+)
G8794 NA non-coding upstream 470909 2819072 ~ 2872749 (+)
G8764 NA non-coding upstream 730554 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 734139 2511622 ~ 2609519 (+)
G9130 ipp non-coding downstream 171686 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 212124 3563708 ~ 3564239 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding downstream 220853 3572437 ~ 3573075 (+)
G9232 NA non-coding downstream 428956 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 432755 3784339 ~ 3784667 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 178835 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 603751 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 654031 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 707072 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 725209 2618316 ~ 2618449 (+)
G9154 rock1,LOC107671690 other downstream 263898 3615482 ~ 3617043 (+)
G9173 NA other downstream 324841 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 404587 3756171 ~ 3790339 (+)
G9361 NA other downstream 870655 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 1212313 4563897 ~ 4570094 (+)

Expression


Co-expression Network