iba57 (iba57,LOC107727502,LOC107593877)


Basic Information

Item Value
gene id iba57
gene name iba57,LOC107727502,LOC107593877
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3336399 ~ 3339974 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263695.1
TAAACGCACGCGCAGTGCACCATGGGAAGGAAAATGGCAGGCTGGAGACAAAATAACGCAAACTTGTGTCGTTCTGAGGAACTTTGAGCCGTCGCGCTGAGGAAAACACCGCAATGCAGAGGGCGATTTTGTTCAGCGGCGCTTTCAGGGCGATCCGGACGGGATCAGGCGGACTTCGCGCGAGATACCTGCACGAGAATGCGCGCGGGATCCAACTCGAGATCAAAACCGGCGACGCCGCGGCACGGTTCAGCTGTTACAGCTTACCGCACAGGACTCTCATCAACGTGTCTGGACGAGACACGAGCTCGTTCCTACAAGGAATAATAACCAACGACGTGGCTCTTCTGGAAGAGGACGCGGTGCGCGCGATGTATGCTCACGTTCTCAACGTTCAGGGCAGGACGCTGTACGACGTCATCCTTTACAGTTTAAAAGGAAACCCGGATGGGTTTAACGGCGTGCTCCTGGAGTGTGACAGCACTGTACGGGACGCCATTATGCGGCTTCTGAAGGTTTACAAGATACGTCGCAAGGTAGAGTTCAGCTCGTGTCCCGCTCTCTCGGTGTGGGCTCTGTTGCCTCAAAGCAAAGCTGGCGTGGCGGAGCGGTCGAAGCCGGAGGTCGCTGCGGCTGATAAAGTGTTAGTACTGGAGCAGGACCCAAGAACTGAACTCATGGGCTGGAGAATGATCAGTAGCTGCCAGGAGAACCCACATGAGATCGTCTCTGCCTGTCAGGAGGGCCACACTGAAGAATACCACAGACATCGATATAAAATCgGACTGCCTGAAGGAGTGAAAGATCTTCCGCCAGGTGAGGCCCTTCCTCTGGAGTCTAACCTCGTCTACATGCAGGGAATTAACTTCAGCAAGGGATGCTACCTCGGCCAGGAGCTGACTGCCAGAACTCACCACACTGGTGTGATACGAAAGCGCCTGATGCCCGTTACCATGTCTGCTCCGGCTGAGACCCTGGAGCAAGGAGCCGCTCTAGAGACCGAGGGGGGTAAACCGGCTGGGAAACACAGGGCAGGGATCGACACGCTGGGGTTGAGCCTCGTACGATTGGCTCATGCCAAAGAGACGCTAAAGCTGAAGTCCTCCGATGGCGTGACCGTGACTTTACAGGCCACCGTACCTGACTGGTGGccaaaaaacagcaaagaatAATCAACACTAGAAAG

Function

symbol description
iba57 Acts upstream of or within heme biosynthetic process. Is expressed in intermediate cell mass of mesoderm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 74 and multiple mitochondrial dysfunctions syndrome 3. Orthologous to human IBA57 (iron-sulfur cluster assembly factor IBA57).

NR:

description
PREDICTED: putative transferase CAF17, mitochondrial

GO:

id name namespace
GO:0006783 heme biosynthetic process biological_process
GO:0006546 glycine catabolic process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004047 aminomethyltransferase activity molecular_function

KEGG:

id description
K22073 IBA57; transferase CAF17, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263695.1 True 1186 mRNA 0.55 3 3336399 3339974

Neighbor

gene id symbol gene type direction distance location
gjc2 LOC107661908,LOC107727543,LOC107711690,LOC107671673,LOC107558016,LOC107593878 coding upstream 3394 3313001 ~ 3333005 (+)
LOC122324044 cyp8b1,cyp8b3,LOC107727542,LOC107661909,LOC107558014,LOC107593879,LOC107711691,LOC107671665 coding upstream 23548 3310936 ~ 3312851 (+)
LOC122355375 LOC107727511,LOC107593880,LOC107711692,LOC107671684,LOC107661913 coding upstream 28101 3306262 ~ 3308298 (+)
abhd3 abhd3,LOC107727531,LOC107671728,LOC107711708,LOC107661904 coding upstream 83275 3235234 ~ 3253124 (+)
LOC122362414 LOC107727480 coding upstream 122733 3209152 ~ 3213666 (+)
snap47 snap47,LOC107661893,LOC107727535,LOC107671760,LOC107711707,LOC107558015 coding downstream 3684 3343658 ~ 3351584 (+)
wnt3a wnt3a,LOC107727506,LOC107558010,LOC107661901 coding downstream 120753 3460727 ~ 3481179 (+)
arf1 arf1,LOC103038497,LOC107671731,LOC107727518 coding downstream 159606 3499580 ~ 3504255 (+)
guk1a LOC107727516,LOC107711703,LOC107593754,LOC107661890,LOC107574785 coding downstream 172915 3512889 ~ 3522776 (+)
zyg11l LOC107671664,LOC107574786,LOC107711672 coding downstream 210261 3550235 ~ 3562870 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 215346 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 423612 2912291 ~ 2912787 (+)
G8794 NA non-coding upstream 463650 2819072 ~ 2872749 (+)
G8764 NA non-coding upstream 723295 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 726880 2511622 ~ 2609519 (+)
G9130 ipp non-coding downstream 183296 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 223734 3563708 ~ 3564239 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding downstream 232463 3572437 ~ 3573075 (+)
G9232 NA non-coding downstream 440566 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 444365 3784339 ~ 3784667 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 171576 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 596492 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 646772 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 699813 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 717950 2618316 ~ 2618449 (+)
G9154 rock1,LOC107671690 other downstream 275508 3615482 ~ 3617043 (+)
G9173 NA other downstream 336451 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 416197 3756171 ~ 3790339 (+)
G9361 NA other downstream 882265 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 1223923 4563897 ~ 4570094 (+)

Expression


Co-expression Network