LOC122362414 (LOC107727480)


Basic Information

Item Value
gene id LOC122362414
gene name LOC107727480
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3209152 ~ 3213666 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263882.1
CGAGTCACATGGAtggaagagtgtgtgtgtgtgtgtgtgtgtgtgtgaggatgtCGGTCGGAGCAATGCGCTCGCACATTTTCACCTCCCTTCCCCCAGCTCCTTTTTTCCCAATGATCATACAGCAGAGCAGCGCAGCAAAGGAGGAATCCGCACAGAATCACTTCATGTGCAAGAAGAAAGAGCCTTTGGGGAAAACGAGTGGACCACCTTGTCTAGCTCTGCGTCGCATCACGTCTCAGTCGGCGTTTGATAAAAGAGGCTGCTAACGGGCTCAGATATTCTAATTGTGAATGGAGAAATGCCTAAAGCCATGGCCAAACCGGGAGAGAAAATGCTCTGTAAAATCTACAGGAAATACAGATTCTACAAATCAAAGAGATCAGAAGCAAAGGAGTGGCAAATCATAGGAGGAGGAACAGACTAGAGTGACAGGAGCTATAAAAAGGTACAATGGCAAAGCTCACGGCATCTATCTGCAACAGGACTGATGAACAGCAAGAGAAAGgtTTCCACAGGTCTGGACTTGCTGTTTACTCGAGGAGGTTTGACGAATCTAACGAACCCAAAGAGACCATGCGACGGAAGCTGAGGCAGAGATACTGCGGTGTGGCTCTTTTCCTCATTGTGCTTGTGTTTGCGGGAGGCCTCGTTCTTCAGGGTCAATGGCCTAGTCAAATCAGCCAGGACTCTGCTGCTCAAGAACTCCAAACCATGAAAACCTTCTCCAACTTCAACACGATGAATACAAAAAAGTTAAGGGAGCTTGAGGAGTCCTCTTTGCCACTTAATTCACATGAAAATGTCATCTCGATTTTGGATGGAAGTTTGCAGCAGGGCTCAGACTCCTTGCTTTCGAACATTAGTTCGCAGGAACAGATAAGTGTGGCGAGGCTACTTAAAGAGGAGCCTTACGACTACATCCTCAACGAGCGGAACGCATGTCTGTTGCGAGCTCCTTTCTTAGTGCTTTTGATTGAGGTTGAGCCCAAGAAAACCGATGCCAGGGATGCCATCAGAAAAACGTGGGCTAATGAAAGCATGGCTGAAGATTTGGGCTTCATACGTCTTTTTTTCTTAGGTGTAAATAAAGACACCCAAACAGACGGAGGCAAACTGCAGCAGACAATAGAGGAAGAAAGTCATCGATATCATGACATCATCCAGCAAGATTACAGGGACACCTACAACAACCTGACCCTAAAAACGCTGATGGGGACGTACTGGATCACAAAATACTGTCCCGAGGCCAAATACGTCATGAAGACAGACAGTGACATGTTTGTCAACACCGAATACCTCATAGAAAAACTCCTAAAGCCCAAAGAGCAACCAgcacagaaatattttacaggACATCTTATGCCAGACATGTCCCCAATTCGAAACCAAGAGAGTAAATGGTACATGCCCCAAGAAGTGTACCCTGGTGAGCGATACCCCACCTTTTGCTCTGGGACTGGGTACGTCTTCTCAGGAGATGTGGCCCAAAGCATATACGTGGTATCTCTGACCATACCTAGAGTGCATTTAGAAGATGTTTATGTGGGTATGTGTCTAGCTAAGCTGAAGATAGAGCCAACACCACCACCAAATGATCAGCTGTTCAATCACTGGCGAGTGCCCTACTCGAGCTGTAGATACAGCAACCTGATCACCTCTCACGGATTTCATCCCAATGAAATCATCCAGTTCTGGCAACACCTGCAGAGCAACAAGCAGAATCCCTGCCAAACGACTGGGTAAAAGGTTCAATAAACAGATTTAGTCTATCTTGAAGGTTTTATTATCAGGTTGAAAAGACCTGTAACATTAACActttaaagtaaagtaaacaggtcaaaagttatttttctgAGGTTTCTGGACAACCTTACCTGGGCTTAGACCATTTTTCCATTACTGCAATCTTAATGATCTTGACAAGCTTGACTGTTTAAATATTGTggcttaaatatttttgataaatctTAGAGGATTGTAAATAAGCAAGATGCGGAAGGCTAATAGATAGCCACTTTTTTGTACCAATAAagccataaaaaaaagta

Function

NR:

description
PREDICTED: beta-1,3-galactosyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263882.1 True 2051 mRNA 0.45 2 3209152 3213666

Neighbor

gene id symbol gene type direction distance location
LOC122355741 LOC107661905,LOC107711709,LOC107671722,LOC107727480,LOC107558019 coding upstream 11705 3194012 ~ 3197447 (+)
kcnt2 LOC107661911,LOC107727504,LOC107593757 coding upstream 18564 3170451 ~ 3190588 (+)
dpp6b dpp6b,LOC107658692,LOC107711712,LOC107671710,LOC107727490,LOC107558008 coding upstream 144550 2955709 ~ 3064602 (+)
bcl2b bcl2b,LOC107727540,LOC107593762,LOC107671740,LOC107711715,LOC107559382 coding upstream 428474 2742715 ~ 2780678 (+)
vps4b vps4b,LOC107710065,LOC107681797,LOC107727524,LOC107671729 coding upstream 479659 2717573 ~ 2729493 (+)
abhd3 abhd3,LOC107727531,LOC107671728,LOC107711708,LOC107661904 coding downstream 21568 3235234 ~ 3253124 (+)
LOC122355375 LOC107727511,LOC107593880,LOC107711692,LOC107671684,LOC107661913 coding downstream 92596 3306262 ~ 3308298 (+)
LOC122324044 cyp8b1,cyp8b3,LOC107727542,LOC107661909,LOC107558014,LOC107593879,LOC107711691,LOC107671665 coding downstream 97270 3310936 ~ 3312851 (+)
gjc2 LOC107661908,LOC107727543,LOC107711690,LOC107671673,LOC107558016,LOC107593878 coding downstream 99335 3313001 ~ 3333005 (+)
iba57 iba57,LOC107727502,LOC107593877 coding downstream 122733 3336399 ~ 3339974 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 88099 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 296365 2912291 ~ 2912787 (+)
G8794 NA non-coding upstream 336403 2819072 ~ 2872749 (+)
G8764 NA non-coding upstream 596048 2612522 ~ 2613104 (+)
G8724 NA non-coding upstream 599633 2511622 ~ 2609519 (+)
G9130 ipp non-coding downstream 309604 3523270 ~ 3524571 (+)
G9141 NA non-coding downstream 350042 3563708 ~ 3564239 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding downstream 358771 3572437 ~ 3573075 (+)
G9232 NA non-coding downstream 566874 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 570673 3784339 ~ 3784667 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 44329 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 469245 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 519525 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 572566 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 590703 2618316 ~ 2618449 (+)
G9154 rock1,LOC107671690 other downstream 401816 3615482 ~ 3617043 (+)
G9173 NA other downstream 462759 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 542505 3756171 ~ 3790339 (+)
G9361 NA other downstream 1008573 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 1350231 4563897 ~ 4570094 (+)

Expression


Co-expression Network