ifi30 (LOC107722513,LOC107688478,LOC107586582,LOC107680256,LOC107550617,LOC107709898)


Basic Information

Item Value
gene id ifi30
gene name LOC107722513,LOC107688478,LOC107586582,LOC107680256,LOC107550617,LOC107709898
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 11536965 ~ 11538807 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264027.1
ttaaaatgtaGGACACTCACTCGTTTTCATTGAGACTCCAAGGCAAGCTGGTGGACAGGGATCATGTTGGGCTTTAATCTGTCTGTGCTGCTCTTCGCCGTATGTtctctaaataaatgcagcggCGCGTTTATTAACTCCTGCAGGTATCCACCTTCACAGTGGTGCGACTCTCGAGACACCGCAGCAGAATGTGGGGTGCTGGAACAGTGCACGAAGTTTAACGAAACCAAGCCCAACGCTGACCCGGTCAAGCTGAGCCTGTACTATGAATCTCTGTGTCCTGGATGCAGAGGGTTTCTTGTAGCGCAGCTCGTGCCAACGTTCATTATGTTGTCGGACATTATGAATGTCGAACTGGTGCCGTATGGAAATGCAcagGAGAAAGAAGATCAAGGGAAGTATACCTTCATTTGTCAGCACGGAGAGAATGAATGTCTTGGTAACATGATTGAGACCTGCATATTGAATATGTTGGGAGCGAAGGCCGTTCTAGTTATTTTCTGCATGGAGTCAGGTGATGATGTGCTGAAAGCTGCCCAGCCTTGTCTTCAAGTCTATTTTCCTGATACGACATGGGATTCGGTGATGAAGTGTGTGAAGGGAGACGAGGGCAACAAAttaatgcatgaaaatgcaCTGAAAACAAATGCTCTGAAACCACCTCATGAATATGTGCCTTGGATAACCATTAATGGAGAGCACACTGACGATCTTCAGGAGAAAGCTATGACTTCTCTTTTCAATCTTGTGTGCAGCTTGTACAAGGGTGAGAAACCACCAGCTTGTGGTCAAGGGTTGAAGAAGAAAACCAACAGTTACTGCATGAACTAATCAATGACTGATAACAGCACTACTCAAGTCAGGAATGAAGACGATGTGTGGAACACAAGTGCAtaaatgcaaagtttttttattatttttttatgtttgtatgtacATGAAAACCTGATTTTGAACATGGGTTTCTGTTGCAAACTGCAAAAGCTGACAACCATTTTTTTATACGATCACGTTTCAAATAGTTTTGTATGCATAcaattaaaaagctaatttcCATTCCCTTGTAA

Function

NR:

description
PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like

GO: NA

KEGG:

id description
K08059 IFI30, GILT; interferon, gamma-inducible protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264027.1 True 1070 mRNA 0.43 7 11536965 11538807

Neighbor

gene id symbol gene type direction distance location
pik3r2 pik3r2,LOC107688475,LOC107709897,LOC107550618,LOC107586063,LOC107722495 coding upstream 1069 11508712 ~ 11535896 (+)
angptl4 LOC107585108,LOC107688469,LOC107680254,LOC107709905,LOC107550621,LOC107722496 coding upstream 98248 11433089 ~ 11438717 (+)
nr2f6a nr2f6a,LOC107722588,LOC107688466,LOC107585161,LOC107680251 coding upstream 169314 11360339 ~ 11367651 (+)
map4l si:dkey-77a20.5,LOC107722549,LOC107688456,LOC107676095,LOC107589807,LOC107718078 coding upstream 236930 11265291 ~ 11300035 (+)
LOC122361723 gyg1a,LOC107550614,LOC107709894,LOC107722604,LOC107688484,LOC107585020 coding upstream 398137 11137101 ~ 11138828 (+)
mpv17l2 mpv17l2,LOC107585061,LOC107688480,LOC107709899,LOC107722522,LOC107680257,LOC107550616 coding downstream 142 11538949 ~ 11540984 (+)
pde4ca pde4ca,LOC107688476,LOC107680260,LOC107709896,LOC107722623,LOC107585054 coding downstream 2738 11541545 ~ 11580423 (+)
rab3aa rab3aa,LOC107585037,LOC107722633,LOC107688479,LOC107709895,LOC107550615 coding downstream 42359 11581166 ~ 11585710 (+)
LOC122354667 NA coding downstream 47018 11585825 ~ 11587904 (+)
agtr1a LOC107584999,LOC107722527,LOC107688540,LOC107680245,LOC107550594,LOC107709880 coding downstream 54344 11593151 ~ 11598650 (+)
G11191 NA non-coding upstream 80101 11456326 ~ 11456864 (+)
G11190 NA non-coding upstream 81557 11454258 ~ 11455408 (+)
G11189 NA non-coding upstream 82854 11453571 ~ 11454111 (+)
G11186 crsp7,LOC107688472,LOC107722610,LOC107585090,LOC107550620 non-coding upstream 87532 11448763 ~ 11449433 (+)
G11179 crsp7,LOC107722610,LOC107585090,LOC107688472,LOC107550620,LOC107709903 non-coding upstream 88404 11446512 ~ 11448561 (+)
LOC122328936 NA non-coding downstream 70444 11609251 ~ 11613566 (+)
G11207 LOC107688485,LOC107585026,LOC107550612,LOC107709892,LOC107722651 non-coding downstream 75434 11614241 ~ 11618863 (+)
G11419 NA non-coding downstream 562068 12100875 ~ 12101126 (+)
G11505 NA non-coding downstream 798860 12337667 ~ 12339049 (+)
G11590 NA non-coding downstream 1006546 12545353 ~ 12545592 (+)
mast3a LOC107722547,LOC107688474,LOC107680242,LOC107550619,LOC107709878,LOC107586070 other upstream 29261 11482104 ~ 11507704 (+)
rps28 NA other upstream 92394 11422090 ~ 11444571 (+)
mrpl34 LOC107688463,LOC107585198,LOC107722555,LOC107680228 other upstream 195854 11339735 ~ 11341111 (+)
fitm1l LOC107589905,LOC107718171,LOC107585187,LOC107688462,LOC107722554 other upstream 198496 11303678 ~ 11338469 (+)
kcnh2a kcnh2a,LOC107718079,LOC107589806,LOC107722642,LOC107676096,LOC107586123 other upstream 272731 11229760 ~ 11264234 (+)
pld1a pld1a,LOC107688495,LOC107550602,LOC107680234,LOC107722545,LOC108442335 other downstream 369266 11908073 ~ 11937590 (+)
LOC122358236 NA other downstream 1085016 12623823 ~ 12626387 (+)
rnf152 rnf152,LOC107729101,LOC107679332,LOC107567413,LOC107674343,LOC107714840,LOC107584540 other downstream 1329122 12867929 ~ 12874008 (+)
G11854 jph1b,jph1,LOC107584332,LOC107550709,LOC107746914,LOC107732545,LOC107664083,LOC107686034,LOC107740042 other downstream 2636557 14175364 ~ 14179615 (+)
plxdc2a LOC107686089,LOC107713976,LOC107751571 other downstream 3207300 14746107 ~ 14753161 (+)

Expression


Co-expression Network