usp14 (usp14,LOC107660400,LOC107711695,LOC107671702,LOC107727520,LOC102778130)


Basic Information

Item Value
gene id usp14
gene name usp14,LOC107660400,LOC107711695,LOC107671702,LOC107727520,LOC102778130
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3658015 ~ 3664392 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264309.1
CCACGGTAGTCGCTCGCCGAGCTCGTCGATCCAGTCATCATGCAGTTGCAGCGTCATTGTGGGCTGCTGTTTGAATGAAGTTAGAAGACACTCAAATCTTCCGCACCCCGACTTAAACCCGGCTTTCGGAGTTGAGCTGAATAAAGGACAAGTGAACGGAAAGATGCCCGTGTTTACAGTGAATGTGAAATGGGGGAAGGAGAAGTTTGACGCGGTCGAGCTGAATACGGAGGAGCCGCCCATGGTGTTCAAAGCCCAGCTTTTTGCTCTAACGGGGGTTCAGCCGGAGAGACAGAAAGTCATGGTGAAAGGAGGAACGCTGAAGGATGACGAATGGGGCAACATCAAGTTGAAAAACGGGATGACTCTTCTGATGATGGGCTCTGCTGACGCCCTGCCCGAGGAGCCTGTAGTGCGACCCATGTTCGTGGAGGACATGACGGAGGAGCAGCTTGCGTCAGCGATGGAGTTGCCGTGTGGATTGACAAATCTGGGCAACACGTGTTACATGAATGCAACGGTGCAGTGTCTACGCTCTGTGCCCGAGCTCAAAGACTCTCTCAGGAGGTACTCCGGTGCCTTGCGGTCTTCTGGAGCTAATGCACCTTCCCAGTACATCACAGCAGCTCTGCGCGATTTGTACGAGTCCATGGATAAGACCGCCTCAAGCATTCCACCCATCATCCTGCTGCAGTTCCTGCACATGGCCTTCCCACAGTTCGCCGAAAAAGGAGACCAGGGCCAGTATCTCCAGCAGgaTGCCAATGAGTGCTGGGTTCAGATGATGCGGGTCCTTCAGCAGAAATTAGAACCTCAAGAATCAGAAACCCCACTGGAGACTGACAGCGACAGTGGAGCTGCTGCTGCctcaaaaaagaagaatttcATCGATCAGTATTTTGGTGTTGAATTTGAAACGACTATGAAGTGTACCGAGTCAGAGGATGAGGAACCAACTAAAGGCACAGAGAGCCAGCTGCAGCTCAGCTGCTTCATCAATCAGGAAGTCAAATATCTCGCCACCGGACTCCGATTGAGGCTACAGGAGGACATCACAAAGCTGTCTCCATCCTTACAAAGAAATGCGCTCTATATCAAATCGTCCAAAATCAGCCGTCTCCCGGCATACCTCACGGTGCAGATGGTCCGGTTCTTCTACAAAGAAAAAGAGTCAGTGAATGCCAAAGTCCTGAAGGATGTCAAATTTCCTCTTATGCTGGACGTCTATGAGCTGTGCACTGCTGAGCTGCAGGAGAAGATGGTTGCTGTGAGGTCGAAGTTTAAGGAGGTTGAAGACAAGAAGCTGGAGATGCAGCAGCAGCCGAAAGAGAGTCAAAAGGTTGGCGCTCCAAAGGAAACAAAATACgaacctttctgtttttctgaagATTTGGGCTCCAACAACAGCGGTTACTACGACCTGCAAGCGGTTCTGACGCATCAGGGGCGATCCAGTTCATCTGGACACTACGTCGCCTGGGTTAAAAGGAAAGAAGATGAATGGGTGAAATTCGACGACGATAAGGTCAGCATCGTGACCCCTGAGGACATCTTGAAGCTGTCTGGTGGTGGCGATTGGCATATAGCATACGTGCTTCTGTACGGCCCTCGACGTCTGGAGATACTGGAGTAACTGGTTCAGAGGGAACTTAAACCATAATTGCCATTTCAGAGCACTGTCTGTATAGATGTGCAAATAAATTTTggtgtctttaaaaaaacatgaccttAATATTTCCTGAACTCTTCATGCATCAACACACAAGTGGCATGTTtaagggtgttttttttctttttccttttttggatGATTGATTGCTGGACGTGATCCTTGTTTGGATTTGGAGCAAtggttttataaatgttttctatatgcattgatttgttttttttaagcctgTGAAAAGGTGTTCATGTTCAATAGACGGTATCCTCCTGTGAGAGAAGTAGTGACTTGGTATATAAAGATGTTCTTGGCCACAAGTTTCAGACTTAAATACATCAAGAACCGTTGTATGATACTGGGATCTCACCAAAAGAAATGCAGTTTGTTTATAAggatatgttgtgtgtgtgtgtggattgaAACTTAGAGGTGGATTTCATATCAAAGCACTTTGAGAGGATGTCTTTATGCTCAATTACTGCTTCTGTCTTTAGCTACCATGCAACAAATGCCACTGTAAACTCATCTGTCCTTAAATACTCAAATACAAAGTGAGAGAACTTGAGCTCTGTAATAAGTTATTGACTACTGGCTTTTCATAAAAGGTGAAATAAACATGCCATTAACAGCTAA

Function

symbol description
usp14 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome complex. Predicted to be active in nucleus. Orthologous to human USP14 (ubiquitin specific peptidase 14).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 14

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11843 USP14, UBP6; ubiquitin carboxyl-terminal hydrolase 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264309.1 True 2299 mRNA 0.46 16 3658015 3664392

Neighbor

gene id symbol gene type direction distance location
LOC122362766 LOC107660396,LOC107727523,LOC402879,LOC107593822 coding upstream 67883 3585341 ~ 3590132 (+)
serbp1b serbp1b,LOC107660393,LOC107567863,LOC107671652 coding upstream 73975 3575656 ~ 3584040 (+)
zyg11l LOC107671664,LOC107574786,LOC107711672 coding upstream 95145 3550235 ~ 3562870 (+)
guk1a LOC107727516,LOC107711703,LOC107593754,LOC107661890,LOC107574785 coding upstream 135239 3512889 ~ 3522776 (+)
arf1 arf1,LOC103038497,LOC107671731,LOC107727518 coding upstream 153760 3499580 ~ 3504255 (+)
pth1r pth1r,pth1ra,LOC107660418,LOC107671674 coding downstream 148921 3813313 ~ 3875726 (+)
slc22a23 LOC107705121,LOC107660403,LOC107708605,LOC107671742,LOC107573857 coding downstream 286891 3951283 ~ 3991543 (+)
tubb2 LOC101473957,LOC100702414,LOC107660405,LOC108239677,LOC103371147 coding downstream 328999 3993391 ~ 3997726 (+)
LOC122323258 LOC107660407,LOC107671708,LOC107705103,LOC107562845 coding downstream 389632 4054024 ~ 4149787 (+)
prkacbb prkacbb,LOC107600310,LOC107705125,LOC107660409,LOC108411205,LOC103034112,LOC106599750,LOC108267323 coding downstream 495764 4160156 ~ 4171747 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding upstream 84940 3572437 ~ 3573075 (+)
G9141 NA non-coding upstream 93776 3563708 ~ 3564239 (+)
G9130 ipp non-coding upstream 133444 3523270 ~ 3524571 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 536962 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 745228 2912291 ~ 2912787 (+)
G9232 NA non-coding downstream 116148 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 119947 3784339 ~ 3784667 (+)
G9235 NA non-coding downstream 120525 3784917 ~ 3785295 (+)
G9241 NA non-coding downstream 221690 3886082 ~ 3916483 (+)
G9302 LOC107600331,LOC107705102 non-coding downstream 348714 4013106 ~ 4021316 (+)
G9154 rock1,LOC107671690 other upstream 40972 3615482 ~ 3617043 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 493192 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 918108 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 968388 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 1021429 2635241 ~ 2636586 (+)
G9173 NA other downstream 12033 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 91779 3756171 ~ 3790339 (+)
G9361 NA other downstream 557847 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 899505 4563897 ~ 4570094 (+)
mylk4a mylk4,LOC107671735,LOC107562868,LOC107708588 other downstream 908553 4572945 ~ 4589827 (+)

Expression


Co-expression Network