LOC122362766 (LOC107660396,LOC107727523,LOC402879,LOC107593822)


Basic Information

Item Value
gene id LOC122362766
gene name LOC107660396,LOC107727523,LOC402879,LOC107593822
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 3585341 ~ 3590132 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043264326.1
GGCGGGGTTTGCGCTTCACCGGTTCGTAAACCACGCTAGTAAGGACGCTCACTTCCTAGTGAAGTATACTTCTTATTGTCTATCAGTGGGAGTGTGTTTTCTTCATCAGAGTCCTCCTGTGGACACACACGAACACTGCAAGTAAAGTGATGGCGGATTGGACGTGTCTTCAATAAACTTCAGagCAGAAATGAGTGACCATCTCCTCAACCCACTGACCGTCATATGTGCGGGATCCTGCTTCGCCTTCTCCGGCCTGTTTTATAAACTATATTCAGATAAAAGACTAGAAGTACAGAAGCTGAAGGAGATTCCAAACTTTCAAGCAGACCATCACCTGCTCAGGATCCTGAATGCGTCGTCCAACAAGAGACTTCATTATGTTGCCGTAGAAGGGTTGGTGCAGGCCGTCGGAGAGCCCATTTCCAGCCAGTTCGTGCCACGCTGTCACGGCGTCATCCAAAAGATAACTTTACACGAGCACTGGAAGTACTGGAACTCTGCTCTAAAAACATGGGTCTCCAAGAAAGTGAACAAGCAGCAGACCACCAACACGGTGCCCTTCAGCTTGGTCCAGCCCGGCTCATACATCAGCGAGGTGTCCGTGCGGGTGGATTCTCCTCTGGAGGCGCGCGGAGATTACCTGGAGCAGGTGCACAAGAGGCTCAGGcaggccaaggaggggctgatGGACGCGGTCGTGCGGGAGCTGAGCGGGGAGAAGCCCGTGGCCCTCGAGGAGCGAGAGGAGCTGCTGCGCGTGGGATCGGCCCTCACCGGGTTCGGGGAGCTCGTTCTGGAGCACGATAAGGTCATGAGGCTACAGCCGCCCAAAGATGGCCGCAGCTACATCCTGATCCCCAGCGATTACAAGAGCTTCATCCAGCGGCACGAGAACAGCACCAACATGTGGAAGAGCTTGACGGCGCTGTTCGGAATTACGGGGTTTGCGCTCGTAGCCGGTTTCGTCCACAGTGCCATTAACAAGGATAAAAACAACTAGCCGACTGAACCGTGAGGGTTTTTGATTTAGgttcccccaaaaatgaaaaatgatcatTATTTGCTTAACCTCGAATAGTTCCGAACCTGCGTGAATTagtttgttctgccgaacacaaaagatactttgaaaaaggtttgtaaccaggctttATTTTCCACTGTGGAAGTCAAAGCGGCTCGATTGCAAACTTTCTTCACAATatctttgtgttcaacagaattCATACAGGTTTTCACACGTTCAAAATCAGGCGCATAATAGCTTTGAATCATTTTgccaatgaaaatattttttcaagcatagcacactggatccaaactgTCTTTATACttgcatttccttttttgtgAATCCAAAATAATGAGCTCTGTTCTACTTTGATTTACCAATATTTAAAGTCATTCCTAACTCACGGGTGATCCTGTCTGTTGTGGACTTTCTCATCAAGGTTCACCAAAAAACTCAAATGGTATCTCCAAATGAGTGTGGAAGACATTCGTAACCATTAATctgtataaatcatttattatcgAAAGGGTCTGCATGTCGTAAGAGGTTTAAAGGGCCACAATAGGGCTTCAAATTATCTGTTTTCTTATCCATAAAATTCGTTCAGAATATTGTGTTCCCTAGGAGAAATGCTTATTTGGAACATGATGGTAAATAAAAGGTGCCGTGTATAATTCTTTTGACtgtactaaagcataaaaatgtttcCTAAATCTCTGCAAAGTAAAACAATGCTACAGGCAGCTATTCTACAGAAA
>XM_043264332.1
GGCGGGGTTTGCGCTTCACCGGTTCGTAAACCACGCTAGTAAGGACGCTCACTTCCTAGTGAAGTATACTTCTTATTGTCTATCAGTGGGAGTGTGTTTTCTTCATCAGAGTCCTCCTGTGGACACACACGAACACTGCAAGTAAAGTGATGGCGGATTGGACGTGTCTTCAATAAACTTCAGAAATGAGTGACCATCTCCTCAACCCACTGACCGTCATATGTGCGGGATCCTGCTTCGCCTTCTCCGGCCTGTTTTATAAACTATATTCAGATAAAAGACTAGAAGTACAGAAGCTGAAGGAGATTCCAAACTTTCAAGCAGACCATCACCTGCTCAGGATCCTGAATGCGTCGTCCAACAAGAGACTTCATTATGTTGCCGTAGAAGGGTTGGTGCAGGCCGTCGGAGAGCCCATTTCCAGCCAGTTCGTGCCACGCTGTCACGGCGTCATCCAAAAGATAACTTTACACGAGCACTGGAAGTACTGGAACTCTGCTCTAAAAACATGGGTCTCCAAGAAAGTGAACAAGCAGCAGACCACCAACACGGTGCCCTTCAGCTTGGTCCAGCCCGGCTCATACATCAGCGAGGTGTCCGTGCGGGTGGATTCTCCTCTGGAGGCGCGCGGAGATTACCTGGAGCAGGTGCACAAGAGGCTCAGGcaggccaaggaggggctgatGGACGCGGTCGTGCGGGAGCTGAGCGGGGAGAAGCCCGTGGCCCTCGAGGAGCGAGAGGAGCTGCTGCGCGTGGGATCGGCCCTCACCGGGTTCGGGGAGCTCGTTCTGGAGCACGATAAGGTCATGAGGCTACAGCCGCCCAAAGATGGCCGCAGCTACATCCTGATCCCCAGCGATTACAAGAGCTTCATCCAGCGGCACGAGAACAGCACCAACATGTGGAAGAGCTTGACGGCGCTGTTCGGAATTACGGGGTTTGCGCTCGTAGCCGGTTTCGTCCACAGTGCCATTAACAAGGATAAAAACAACTAGCCGACTGAACCGTGAGGGTTTTTGATTTAGgttcccccaaaaatgaaaaatgatcatTATTTGCTTAACCTCGAATAGTTCCGAACCTGCGTGAATTagtttgttctgccgaacacaaaagatactttgaaaaaggtttgtaaccaggctttATTTTCCACTGTGGAAGTCAAAGCGGCTCGATTGCAAACTTTCTTCACAATatctttgtgttcaacagaattCATACAGGTTTTCACACGTTCAAAATCAGGCGCATAATAGCTTTGAATCATTTTgccaatgaaaatattttttcaagcatagcacactggatccaaactgTCTTTATACttgcatttccttttttgtgAATCCAAAATAATGAGCTCTGTTCTACTTTGATTTACCAATATTTAAAGTCATTCCTAACTCACGGGTGATCCTGTCTGTTGTGGACTTTCTCATCAAGGTTCACCAAAAAACTCAAATGGTATCTCCAAATGAGTGTGGAAGACATTCGTAACCATTAATctgtataaatcatttattatcgAAAGGGTCTGCATGTCGTAAGAGGTTTAAAGGGCCACAATAGGGCTTCAAATTATCTGTTTTCTTATCCATAAAATTCGTTCAGAATATTGTGTTCCCTAGGAGAAATGCTTATTTGGAACATGATGGTAAATAAAAGGTGCCGTGTATAATTCTTTTGACtgtactaaagcataaaaatgtttcCTAAATCTCTGCAAAGTAAAACAATGCTACAGGCAGCTATTCTACAGAAA

Function

NR:

description
PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009987 cellular process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043264326.1 True 1773 mRNA 0.46 5 3585341 3590132
XM_043264332.1 False 1768 mRNA 0.46 5 3585341 3590132

Neighbor

gene id symbol gene type direction distance location
serbp1b serbp1b,LOC107660393,LOC107567863,LOC107671652 coding upstream 1301 3575656 ~ 3584040 (+)
zyg11l LOC107671664,LOC107574786,LOC107711672 coding upstream 22471 3550235 ~ 3562870 (+)
guk1a LOC107727516,LOC107711703,LOC107593754,LOC107661890,LOC107574785 coding upstream 62565 3512889 ~ 3522776 (+)
arf1 arf1,LOC103038497,LOC107671731,LOC107727518 coding upstream 81086 3499580 ~ 3504255 (+)
wnt3a wnt3a,LOC107727506,LOC107558010,LOC107661901 coding upstream 104162 3460727 ~ 3481179 (+)
usp14 usp14,LOC107660400,LOC107711695,LOC107671702,LOC107727520,LOC102778130 coding downstream 67883 3658015 ~ 3664392 (+)
pth1r pth1r,pth1ra,LOC107660418,LOC107671674 coding downstream 223181 3813313 ~ 3875726 (+)
slc22a23 LOC107705121,LOC107660403,LOC107708605,LOC107671742,LOC107573857 coding downstream 361151 3951283 ~ 3991543 (+)
tubb2 LOC101473957,LOC100702414,LOC107660405,LOC108239677,LOC103371147 coding downstream 403259 3993391 ~ 3997726 (+)
LOC122323258 LOC107660407,LOC107671708,LOC107705103,LOC107562845 coding downstream 463892 4054024 ~ 4149787 (+)
G9142 LOC107579015,LOC107671680,LOC107711685 non-coding upstream 12266 3572437 ~ 3573075 (+)
G9141 NA non-coding upstream 21102 3563708 ~ 3564239 (+)
G9130 ipp non-coding upstream 60770 3523270 ~ 3524571 (+)
G9022 prtfdc1,LOC107711679,LOC107558005,LOC107671666,LOC104918289 non-coding upstream 464288 3116848 ~ 3121053 (+)
G8816 NA non-coding upstream 672554 2912291 ~ 2912787 (+)
G9232 NA non-coding downstream 190408 3780540 ~ 3780778 (+)
G9234 NA non-coding downstream 194207 3784339 ~ 3784667 (+)
G9235 NA non-coding downstream 194785 3784917 ~ 3785295 (+)
G9241 NA non-coding downstream 295950 3886082 ~ 3916483 (+)
G9302 LOC107600331,LOC107705102 non-coding downstream 422974 4013106 ~ 4021316 (+)
gpr158b gpr158b,LOC107593759,LOC107711710,LOC107671743,LOC107727549 other upstream 420518 3123124 ~ 3164823 (+)
kdsr kdsr,LOC107681813,LOC107727538,LOC107671756,LOC102792240 other upstream 845434 2729636 ~ 2739907 (+)
LOC122356587 tsc22d2,LOC107727513,LOC107681775,LOC103360179,LOC107559349 other upstream 895714 2675370 ~ 2689627 (+)
G8768 zbtb41,LOC107671738,LOC107559347,LOC107709336,LOC107681803 other upstream 948755 2635241 ~ 2636586 (+)
LOC122329004 NA other upstream 966892 2618316 ~ 2618449 (+)
G9154 rock1,LOC107671690 other downstream 25350 3615482 ~ 3617043 (+)
G9173 NA other downstream 86293 3676425 ~ 3678934 (+)
LOC122355245 crhr2,LOC107593817,LOC107660401,LOC100335005,LOC107671670 other downstream 166039 3756171 ~ 3790339 (+)
G9361 NA other downstream 632107 4222239 ~ 4223112 (+)
G9416 wrnip1 other downstream 973765 4563897 ~ 4570094 (+)

Expression


Co-expression Network