G90573


Basic Information

Item Value
gene id G90573
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 3952600 ~ 4049612 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU134102
CTGAAAAttagatttcttttatttgaaggTATTGGTGGCGcgatataaaatcatatataaaatgaaaacaaagatgACAGAGGCATGAACGAAGCTGGCTGTTAGCAGACTCCGTTTGAGGATTGAGCGTTGCACCGGTTTTCATTACAACATTGCCAGCCTTTCTTTTGACAGAATACCTCGCTGACGCAGCCTTTCTCTCCAGTTGCCTAGTGTAGCAGACTTGAGGAACTTTACTCTTGCACTGCAGAGGCATGTTCCTCACCATCAGGAAGTCTTCACCGCAGCACTCAATGAAATGATCCGCTgGCAGAGAGGCAGCAGCAGGAGCAGAACGAACCAGGCCTTCATCTTGGCTCTGTGGGTTTGTGATGTGGTTTCAGCGCTGTCTGGTTGCTCCGAAATGCCTGCTGGAATCCGA
>TU134103
CTGAAAAttagatttcttttatttgaaggTATTGGTGGCGcgatataaaatcatatataaaatgaaaacaaagatgACAGAGGCATGAACGAAGCTGGCTGTTAGCAGACTCCGTTTGAGGATTGAGCGTTGCACCGGTTTTCATTACAACATTGCCAGCCTTTCTTTTGACAGAATACCTCGCTGACGCAGCCTTTCTCTCCAGTTGCTGTGGAAGAGATATCAGATGTCGGTTCTTAACTGCTAAATCATGCACAGTTATTTATGGTTGGTAGACTTTATTAcgttacaaatatattatactgCAGGGCAGTTGAATGCttggatctgattggctgacagaCATTCTAAAGCGGGGACGTCAAACTCAATTCCCGGAAGGCCGCAGAGTTAAGTTTCAACCCTGCTTCAACACACGTACCGCGTAGCTTTCAAATAAGCCCGAAggacttgattagctggatcaggtgtgtttaattagagctGTATTTGAACTCTTCAGGGCTCCGGacctccaggaactgagttcGACCCGCCTGTTCTAAGGTGTGCTATTGTTTTCAGGGAAATGCGCATGGAACGTGGTTCCAAGCAGGTCATGGTCGCATTGTGACCACTTCACCAAACGATTTCAGGTATTTTGAAAGTCCTGTAAACGAACCAAACCCAACAGCGACACAAGCCgtgcaaataaatatagtaacGTTAAACGTAAGGTTAAAAACGACAGATTATGTACCTGTTTTGCTgccaaattacattttattatgtacgGAATGCATCTACTCTCccg
>TU134104
CTGAAAAttagatttcttttatttgaaggTATTGGTGGCGcgatataaaatcatatataaaatgaaaacaaagatgACAGAGGCATGAACGAAGCTGGCTGTTAGCAGACTCCGTTTGAGGATTGAGCGTTGCACCGGTTTTCATTACAACATTGCCAGCCTTTCTTTTGACAGAATACCTCGCTGACGCAGCCTTTCTCTCCAGTTGCTACAAACCTTT

Function

GO:

id name namespace
GO:0034170 toll-like receptor 11 signaling pathway biological_process
GO:0045088 regulation of innate immune response biological_process
GO:0045089 positive regulation of innate immune response biological_process
GO:0002253 activation of immune response biological_process
GO:0031347 regulation of defense response biological_process
GO:0031349 positive regulation of defense response biological_process
GO:0002218 activation of innate immune response biological_process
GO:0002221 pattern recognition receptor signaling pathway biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0002757 immune response-activating signal transduction biological_process
GO:0002758 innate immune response-activating signal transduction biological_process
GO:0002764 immune response-regulating signaling pathway biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU134102 False 421 lncRNA 0.47 3 3952600 3955913
TU134103 True 793 lncRNA 0.43 2 3952600 3953707
TU134104 False 220 lncRNA 0.40 2 3952600 4049612

Neighbor

gene id symbol gene type direction distance location
LOC122356299 eml4,LOC107586470 coding upstream 3645 3881586 ~ 3948955 (+)
ubr2 ubr2,LOC107669566,LOC107696377 coding upstream 193465 3729913 ~ 3759135 (+)
si:ch73-193i2.2 LOC107728794,LOC107590009,LOC107696375,LOC107739482 coding upstream 223132 3717296 ~ 3729468 (+)
LOC122356793 LOC107669554,LOC107696371,LOC107578696 coding upstream 235306 3713833 ~ 3717294 (+)
LOC122356604 LOC107739472,LOC107565599,LOC107669574 coding upstream 512286 3434523 ~ 3440314 (+)
trnai-uau_4 NA coding downstream 22194 4071806 ~ 4071899 (+)
plekhh2 LOC107678558,LOC107707149,LOC107699295,LOC107586497,LOC107590017,LOC107727353 coding downstream 276026 4325638 ~ 4348853 (+)
LOC122356796 NA coding downstream 310923 4360535 ~ 4362542 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding downstream 314411 4364023 ~ 4373553 (+)
LOC122356983 LOC107727362,LOC107586506,LOC107699285,LOC107678514,LOC107590018,LOC107756817 coding downstream 323602 4373214 ~ 4377830 (+)
G90571 NA non-coding upstream 57645 3872759 ~ 3894955 (+)
G90564 NA non-coding upstream 97057 3852210 ~ 3855543 (+)
G90514 NA non-coding upstream 383108 3569068 ~ 3569492 (+)
G90388 NA non-coding upstream 408948 3502068 ~ 3543652 (+)
G90381 NA non-coding upstream 462809 3469447 ~ 3489791 (+)
G90646 LOC107707147,LOC108422651 non-coding downstream 7648 4057260 ~ 4062779 (+)
G90650 NA non-coding downstream 55635 4105247 ~ 4105471 (+)
LOC122356176 NA non-coding downstream 87705 4137317 ~ 4142502 (+)
LOC122357002 NA non-coding downstream 194996 4244608 ~ 4245790 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding downstream 410027 4459639 ~ 4465868 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 120050 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 238837 3620406 ~ 3713763 (+)
G90377 NA other upstream 502583 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 671603 3277837 ~ 3280997 (+)
G90343 ppp2r5d,LOC107696374,LOC107559765 other upstream 678228 3271325 ~ 3274372 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other downstream 132887 4182499 ~ 4353931 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 512036 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 942541 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 1128106 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 1211424 5261036 ~ 5271247 (+)

Expression


Co-expression Network