nkx2.3 (nkx2.3,LOC107747299,LOC107665571,LOC107702735,LOC107601037,LOC107586108,LOC107719236)


Basic Information

Item Value
gene id nkx2.3
gene name nkx2.3,LOC107747299,LOC107665571,LOC107702735,LOC107601037,LOC107586108,LOC107719236
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15752636 ~ 15755128 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU139376
GACAGTTTAACACCGACGAGTGGCGGTCCTCACCTCTCTTCATGCAAATCAAGCAGCCGTGACAAAATGGGAGATTAATCGACACATTTAGCGCCCGATGATGCTTCCGAGCCCGGTCACATCAACGCCGTTTTCTGTGAAGGATATACTGAAACTGGAGCAGCAATCTCGCCACCTTCAATCTCTGCATCCCGCGCAGCACCACGCGCAACTGCATCCGGAACTGCACGAGAGATTCCAGGCGCCGTCATCCTGCTTTCTCGGAGGTGGAGACAGCTCCGGCTTCTCAGACAACGACGAGAAGATGTCTTTTCTGAACTCTCTCTCCATGCAGGACAGCTTAGCGGAGAGCAGCCTTTCGCCTCCGATGTTTGTCCACCCGGCCCTGGGACACGTCGACACTAAACTTGAAGATGAACTTGAGGAGCACGAAACGAGTGGgtgatttgttgttttacagCCGGCGAGAGGATCGAACTCGTCGTGTCTGTGAATATAAGACGGAGGGGGAAAGAAAGATTACAGTAATTCAAAGCGGCGTTGTGTTTTTTGATGAAAAAGTCtagtgcagtttttattttattcatatcatttttttagtgCAACATACATATAGTAAACAAACTAACTAAACAAGCTGGCACTAAAAAAAGGCGCAAATTAGGACAACcacaacatttttgtaacatgtTATAAATTAGTATTGTTTTTTGGATTGCGTAAAAGAGCAGCTTTGATGAAGGCCTATTTTTATGCGCCTTCGATGCAAGGCACCTCGTAAAAGCATGCAATTATGATTGagttatacaattattataaagcTGTATTGCTTATGTtaatattgcatgttttttttttttataactttcgTACTTTACGTCGGTCTAACCCTGAAGAGGCATCTATAGGCACATGCAGAAACGTAtctaaaatgaatacataaaatataaataacaccgACTGACCACATGTTTGCTGTTTATGTGCCGCACGACATAATTAAAACACTGACCGCTATACAATATGCACTAAGTTCTATTAGTCGATCTTTGCACtacatatattaattaatagctaatgcaattaaaattgtaattttattttacattattgaaTGATAAACTAAATGATTTTCTATCCGCGAGCGCCAAAGCGCAGCCAAAGGCCTACTGCACCCAGAACTCGCCGCAATTTCACGCTCTTGTTTCGTTCGCGCGAGTCAATGCTTCTGTGAATTGCGCGAAGTGAGAGTTGACCGAGTTAGCTCTGCGTATTTTGTGCCTCCTGTTTTTTCCAGAGAGCTGCGGCGCCATCCTCAGATCCCCGGAGTGCGAGGGAGAGGCGCACTCGGACACGGAGCGGGCGCAGCGGCAGAGGACGCGCAGGAAGCCGCGGGTTCTCTTCAGCCAGGCGCAGGTCTTCGAGCTCGAGCGGCGCTTCAAGCAGCAGCGCTACTTATCGGCTCCCGAGAGGGAGCACCTGGCCAGTACCCTGAAACTGACGTCGACGCAGGTCAAAATCTGGTTCCAGAACCGCAGATACAAGTGCAAGCGACAGCGTCAGGACAAAACACTGGAAATGGCGGGACACCATcaccgccgccgccgccgccgcccaGGAGGGTGGCGGTGCCGGTGCTAGTCCGGGACGGCAAACCCTGCTTAACGGGATCGCAGAGCTACAACGCCACTTACGCGGTGAACCCGGGCCCGTACACGTATAACGGCTACTCGTCTTATAACAACGCCGCCGCGTACACAAACCCTTACAGCTGTGCATACCCCAGCCTCCCTCCTCTCCCAGCGAACACATCCACTAACGCGCTGATGAGCATGAGTCTGAACAACCTCGGAACGTATTCCCAACCCCAGACAACGCAAGGAACGCCCGTGTCCGCGTGCCAAGGGACCCTGCAGGGTATTCGGGCATGGTAGCGCCATTGCAACCCGCTCGCCTGTATATAAATGGCAACTTTACAATATTAGCAAACAGTTAGCCACGTGTTATAGGCCTAGGGTCCCGTATAGTCTACCTTTTCAGTATAAACTTGAGTGAATTTCTTCTCGCAACTCTTCCGTGACGGCTGAACGAGTGCACACGAATAATCGTGGCAATTTTTCGACCACCTATTCGGACGACACACTCCCTGTACATTTGCCGGTCTCGTTTCAGACCGGCACTATCAGAGACAGCCGTTTTCTCATTCGTTGCACTTATCCATGAAAATGTCATTGCCTAAAATGTTAACGAATACTGACAAcggtgtgtgtgattttgtgcaAACctacattgtaaaaataaaaac
>XM_043254609.1
GCCCCGGTAACGTGACATCACCGGGCAGAAGAACTGCCTTGTGCTGCCGGACTCCAAGAAAAACACACGACAGTTTAACACCGACGAGTGGCGGTCCTCACCTCTCTTCATGCAAATCAAGCAGCCGTGACAAAATGGGAGATTAATCGACACATTTAGCGCCCGATGATGCTTCCGAGCCCGGTCACATCAACGCCGTTTTCTGTGAAGGATATACTGAAACTGGAGCAGCAATCTCGCCACCTTCAATCTCTGCATCCCGCGCAGCACCACGCGCAACTGCATCCGGAACTGCACGAGAGATTCCAGGCGCCGTCATCCTGCTTTCTCGGAGGTGGAGACAGCTCCGGCTTCTCAGACAACGACGAGAAGATGTCTTTTCTGAACTCTCTCTCCATGCAGGACAGCTTAGCGGAGAGCAGCCTTTCGCCTCCGATGTTTGTCCACCCGGCCCTGGGACACGTCGACACTAAACTTGAAGATGAACTTGAGGAGCACGAAACGAAGAGCTGCGGCGCCATCCTCAGATCCCCGGAGTGCGAGGGAGAGGCGCACTCGGACACGGAGCGGGCGCAGCGGCAGAGGACGCGCAGGAAGCCGCGGGTTCTCTTCAGCCAGGCGCAGGTCTTCGAGCTCGAGCGGCGCTTCAAGCAGCAGCGCTACTTATCGGCTCCCGAGAGGGAGCACCTGGCCAGTACCCTGAAACTGACGTCGACGCAGGTCAAAATCTGGTTCCAGAACCGCAGATACAAGTGCAAGCGACAGCGTCAGGACAAAACACTGGAAATGGCGGGACACCATcacccgccgccgccgccgcccaGGAGGGTGGCGGTGCCGGTGCTAGTCCGGGACGGCAAACCCTGCTTAACGGGATCGCAGAGCTACAACGCCACTTACGCGGTGAACCCGGGCCCGTACACGTATAACGGCTACTCGTCTTATAACAACGCCGCCGCGTACACAAACCCTTACAGCTGTGCATACCCCAGCCTCCCTCCTCTCCCAGCGAACACATCCACTAACGCGCTGATGAGCATGAGTCTGAACAACCTCGGAACGTATTCCCAACCCCAGACAACGCAAGGAACGCCCGTGTCCGCGTGCCAAGGGACCCTGCAGGGTATTCGGGCATGGTAGCGCCATTGCAACCCGCTCGCCTGTATATAAATGGCAACTTTACAATATTAGCAAACAGTTAGCCACGTGTTATAGGCCTAGGGTCCCGTATAGTCTACCTTTTCAGTATAAACTTGAGTGAATTTCTTCTCGCAACTCTTCCGTGACGGCTGAACGAGTGCACACGAATAATCGTGGCAATTTTTCGACCACCTATTCGGACGACACACTCCCTGTACATTTGCCGGTCTCGTTTCAGACCGGCACTATCAGAGACAGCCGTTTTCTCATTCGTTGCACTTATCCATGAAAATGTCATTGCCTAAAATGTTAACGAATACTGACAAcggtgtgtgtgattttgtgcaAACctacattgtaaaaataaaaacagtaaacttta

Function

symbol description
nkx2.3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including cranial ganglion; endoderm; heart; pharyngeal arch; and pharynx. Orthologous to human NKX2-3 (NK2 homeobox 3).

NR:

description
PREDICTED: homeobox protein Nkx-2.3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139376 True 2305 TUCP 0.48 2 15752647 15755060
XM_043254609.1 False 1522 mRNA 0.55 4 15752636 15755128

Neighbor

gene id symbol gene type direction distance location
nkx3.3 nkx3.3,LOC107747300,LOC107665572,LOC107586090,LOC107579953 coding downstream 4176 15743917 ~ 15748460 (-)
pyroxd2 pyroxd2,LOC107747264,LOC107601051,LOC107665597,LOC107586065,LOC107702741,LOC107719216 coding downstream 42488 15701427 ~ 15710148 (-)
loxl4 loxl4,LOC107665580,LOC107601038,LOC107702733,LOC107719235,LOC107586088 coding downstream 71242 15654465 ~ 15681394 (-)
crtac1b crtac1b,crtac1,LOC107665558,LOC107702729,LOC107601025,LOC108443504 coding downstream 120066 15609866 ~ 15632570 (-)
sfrp5 sfrp5,LOC107747303,LOC107665568,LOC107728441,LOC107601040,LOC107564685 coding downstream 191079 15546586 ~ 15561557 (-)
st3gal7 st3gal7,LOC107665608,LOC107601047,LOC107747259 coding upstream 116947 15872075 ~ 15876837 (-)
morn4 morn4,LOC107719210,LOC107702749,LOC107747296 coding upstream 134845 15889973 ~ 15893677 (-)
ipmka LOC107747295,LOC107665575,LOC107719230,LOC107586076,LOC107549139 coding upstream 524537 16279665 ~ 16289717 (-)
LOC122356736 nanp,LOC107586073,LOC107736515,LOC107665564,LOC107549144,LOC107676393,LOC107719206 coding upstream 547081 16302209 ~ 16304328 (-)
LOC122356349 rmdn2,LOC101884968,LOC107719222,LOC107549137,LOC107665553,LOC107747279,LOC107676373 coding upstream 579896 16335024 ~ 16361805 (-)
G94145 NA non-coding downstream 112003 15640275 ~ 15640633 (-)
G94132 NA non-coding downstream 146923 15604687 ~ 15605713 (-)
G94063 NA non-coding downstream 468581 15279407 ~ 15284055 (-)
G94016 NA non-coding downstream 756936 14980996 ~ 14995700 (-)
G94003 NA non-coding downstream 879622 14872432 ~ 14873014 (-)
G94199 NA non-coding upstream 7423 15762551 ~ 15762843 (-)
G94200 NA non-coding upstream 8296 15763424 ~ 15763745 (-)
G94232 NA non-coding upstream 152142 15907270 ~ 15907491 (-)
G94247 NA non-coding upstream 211886 15967014 ~ 15967343 (-)
G94298 LOC107549156,LOC107665613,LOC107747251,LOC107676394,LOC107719205 non-coding upstream 575014 16330142 ~ 16332347 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other downstream 31820 15686270 ~ 15720816 (-)
G94147 NA other downstream 110133 15642031 ~ 15642503 (-)
G94128 NA other downstream 168719 15564617 ~ 15583917 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other downstream 499279 15227332 ~ 15253357 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other downstream 653403 15024832 ~ 15099233 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other upstream 19649 15774777 ~ 15793540 (-)
G94216 NA other upstream 122399 15877527 ~ 15885222 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other upstream 254559 16009687 ~ 16169204 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other upstream 535026 16290154 ~ 16292379 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other upstream 670569 16425697 ~ 16426535 (-)

Expression


Co-expression Network