G94414 (opn3,LOC107665579,LOC107549142,LOC107747290,LOC107719228)


Basic Information

Item Value
gene id G94414
gene name opn3,LOC107665579,LOC107549142,LOC107747290,LOC107719228
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 16429841 ~ 16430293 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU139699
ATAAAAGCGACCGCTAAATGCttgatgtaaataaatgtaaatgttcataaaatgcaaaatgaaattatgaatagcgaaaagcatttgattttcatttaatattacacaaaacattaagaaaCACTGTATGTTGACTTTGTATCTGTGAGGATACCTGACCTGACTATATAATATACTGGCCATCCATCAGAATTAAGCTGAcctttctgctcataaaagcgTAGATGACGGGGTTATAGGCAGTGCTGGATTTGGCGAAGAGAGAGGGAATGATGGCAACCGTTGGAGAGATGACACTCGTCCTGCCAAAAGCCTCCAGCATGGAGACCACGGCATAGGGTGTCCAGCACACCAGGAAACAGGAAATCATCATCAGGAACATCATCGCCACTTTCTTCTCATATCGCAGAATCTTAATTGTCTGAACGGTCTGCAGATCCTGGATAGAGCGCA

Function

symbol description
opn3 Enables retinal binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument. Orthologous to human OPN3 (opsin 3).

NR:

description
opsin 3 (encephalopsin, panopsin), partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU139699 True 453 lncRNA 0.41 1 16429841 16430293

Neighbor

gene id symbol gene type direction distance location
LOC122356349 rmdn2,LOC101884968,LOC107719222,LOC107549137,LOC107665553,LOC107747279,LOC107676373 coding downstream 68036 16335024 ~ 16361805 (-)
LOC122356736 nanp,LOC107586073,LOC107736515,LOC107665564,LOC107549144,LOC107676393,LOC107719206 coding downstream 125513 16302209 ~ 16304328 (-)
ipmka LOC107747295,LOC107665575,LOC107719230,LOC107586076,LOC107549139 coding downstream 140124 16279665 ~ 16289717 (-)
morn4 morn4,LOC107719210,LOC107702749,LOC107747296 coding downstream 536164 15889973 ~ 15893677 (-)
st3gal7 st3gal7,LOC107665608,LOC107601047,LOC107747259 coding downstream 553004 15872075 ~ 15876837 (-)
LOC122356747 kmo,LOC107665616,LOC107549141,LOC101885014,LOC106576798 coding upstream 2402 16432695 ~ 16445739 (-)
trnah-gug_23 NA coding upstream 17398 16447691 ~ 16447762 (-)
march5 march5,LOC107719203,LOC107549154,LOC107747250,LOC107665589 coding upstream 39642 16469935 ~ 16487675 (-)
btaf1 btaf1,LOC107679172,LOC107676378,LOC107747276,LOC106604898 coding upstream 89243 16519536 ~ 16538481 (-)
LOC122356270 LOC107549152,LOC107747275 coding upstream 112788 16543081 ~ 16546492 (-)
G94411 opn3,LOC107549142,LOC107665579,LOC107747290,LOC107719228,LOC107586115 non-coding downstream 6048 16422666 ~ 16423793 (-)
G94308 NA non-coding downstream 52918 16376573 ~ 16376923 (-)
G94298 LOC107549156,LOC107665613,LOC107747251,LOC107676394,LOC107719205 non-coding downstream 97494 16330142 ~ 16332347 (-)
G94247 NA non-coding downstream 462498 15967014 ~ 15967343 (-)
G94232 NA non-coding downstream 522350 15907270 ~ 15907491 (-)
G94416 opn3,LOC107665579,LOC107747290,LOC107549142,LOC107549136,LOC107586115 non-coding upstream 381 16430674 ~ 16432430 (-)
G94425 NA non-coding upstream 85564 16515857 ~ 16518826 (-)
G94453 mlh1 non-coding upstream 137622 16567915 ~ 16569250 (-)
G94455 mrpl14,LOC107676385,LOC107679189,LOC107734281 non-coding upstream 163132 16593425 ~ 16594731 (-)
G94511 NA non-coding upstream 554213 16984506 ~ 17015657 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 3306 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 137462 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 260637 16009687 ~ 16169204 (-)
G94216 NA other downstream 544619 15877527 ~ 15885222 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other downstream 636301 15774777 ~ 15793540 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other upstream 944457 17374750 ~ 17387006 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 2115278 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 2527410 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 2855737 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 3432237 19862530 ~ 19907062 (-)

Expression


Co-expression Network