LOC122356193 (slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862)


Basic Information

Item Value
gene id LOC122356193
gene name slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17374750 ~ 17387006 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU139972
cagCTATCGACGTGCTGAAGCATGAGGTCATCTTCAGCGTGGTGCGTCTGGCTGCCACCTGCATCATCTGCCTGGgcttcctgctgctgctgctccctgAGGAGTGGGATACGGTCACCCTGCGCTTCCTCACCACCCTCGCCGACAAGAAGACGGAGGAGCACGGCGAGGAGCTCACGGAGTCCAGCGTCCACACGCGCAGCCGGAGTAGAGCCAACGGAGCCGTATCAATCCCCATggcatgacctttgacctgtgaATGAACAGCCAGCGATCGACACCGATCCTCCCTGTGGCAGCCTATaaggGATCTAGCAATCTCTTCCCTGCAATCTCTATGGGAAGATACGCATCCATTCCATAGAAATGGACTTTCAGACTTTGGTCTCCCGCTGCACGACAAACCCCGCCCCCCTGAACCCCCTCCGCTAGCCCCTTCCCATGGAATGTATTCTGTGAATATCGACTCTGTCAGGGCCAGTTCGGCTCACTGTACACATGAATGCATTCAGAgattggatatatatatatatatgtatatgaagtATGAGGATTATTTGCATTGCACGTAGTAGTGTAATACATGTAGGAGTAATATATTATGCTTTAATGAATGagcctttcttttctttttataataaaagacaaaaatctgCTTTGAAAAGCGCTTGTTATTTTTTGACACTTGACGCGTAGAGCTGCAATCaatattcttttctttatttcagagAAACCTAACACGAGAAATGGGGACACTCCATACTCTAGGCCCTC
>XM_043254696.1
GGCTGGAGTGTGCGCGAGAGAGCGGGTGAGCGGACCGTTCCAGTCCGTGTGTCTCTGTGCGCGTGAGCAGTGGTCTGCCGTCATTCATGGGGATCATGTACGGAGATGGAGACCGGCTCGGACCCCCGCGGAGGGACTGCATGTGTTACCTGGGACCCCCGACCACCTTGATGCCCATCGGAATGCGCAAATCCCCCGAGGTGAGTCCCAGAAGGCTGTCCGACATCAGCCCCCAACTCCGCCAGCTCAAGTACCTGGTGGTGGATGAATCGATTAAAGAGGACCTGAAGTCATCTCGATCAGTTGAGGACATCAACAGCGCGTCCATCGAGGAGAGGATCTTGAGAATCACCGGCTATTATGGCTACCAGCCGTGGAATGCCGTGTATAAGAGGGAGGACCGGCCGAGGGAGAACATCGTGGGCACTGCCGATGGACAGGCGATGGTGGGCGGAGCAGGGGCGGAGTCAGGGACCGGAAGGCAGAAATTAAACTGCTGTGTGCGAGTGACAGCCGTCCAAGTGCGAAAAGCAATATGGGGCGTGGCCATGGTGATGTGCGTGTGCTCGTCGTGGGCAGGCTCCACCCAGCTGGCCAAACTGACCTTCAAGCAGTACGACGCGCCTTTCACTCTCACGTGGTTCGCCACCACGTGGAACTGCCTCTTCTTTCCTCTGTACTACATTGGACATCTGTGCAAGAGTCCTGAGAGACAGACACCAAAACAGAGGTTTAGAGAGTGCTGTCGGTTCTTCGGGGACGATGGACTGACGGCGAAGGTGTTCTTCACTAAAGTGGCTCCTTTTGGCCTGCTGTGGATTATGACAAACTACCTATACCTTCAGGCTCTGAGAAAGATCAACAGCACTGATGTATCGGCCCTCTTCTGCTGTAACAAAGCCTTCGTCTTTCTCCTGTCCTGGATTGTGCTGCGGGATCGCTTCATGGGCGTCAGGATTGTTGCTGCCATTCTGGCCATCGCTGGGATCGTGATGCTGACCTACGCTGATGGCTTTCACAGTCACTCCGTTATCGGCATAACGCTTGTAGTGGCCTCTGCATCTGCCTCTGCCCTCTATAAGGTGCTTTTCAAGCTCGTCTTGGGCAGTGCCAAGTTTGGTGAGGCGGCTCTGTTTCTGACCATTGTCGGAGGCGCAAACTTTGTCTTTATGAGCTTTGTTCCAGTCATACTGTACTTCACACATGTTGAGTACTTCACATCCATTGTTGATCTTCCCTGGGCCTACCTGTGTGGAGTAGCTGGACTCTTGCTAGcatTCAATATTCTGGTGAATTTTGGCATTGCCATTACATACCCTACGCTGATTTCACTTGGAATTGTGCTGAGTGTTCCAGTCAATGCAATGGTGGACCTGTACACCTGTGATATCCACTTCAACACAGTTCGACTCATCGCTGTGTTTATCATCTGTCTGGGCTTCCTGATGCTGCTGTTACCGGAGGACTGGGATCAGTGTTTGATTGAGCTCGGCACCAAACTCAGAAAGCGAGAACAGCCTGTTGAGCCGGCTGAGACTGGAACCAGCTCAGGACTCAACTGGACCCGACGGGCCAGGACCTCGATGTCCACATTCTCCCACTGACACCCATTTACCTTTTCGGGTTTAAAGTCCAGTGACTGGATGATGCTGGAAAGAGCGTTCATTCCATAGGCTATAATTCACAATCATACACATTACAGCAAAAGCTTTCAGTCgtgcaaaagaaacatttatatatttttttgcagttcacCCAACTGTAAGTGGATTTGAAAAACGACTTGGGTCTTTATTTGGAACTAAAGAGCAGGGGTCTCAAACTACAAACATACAGGCTATTGGGTTAATAGTTTATCAGTTTATagacttttttcccctttcagTATAAATtgaaactttaataaataaatattacatttaaaaatatatttcaaattattatctgtaatttaatgtatattatatattgtaatttaa
>XM_043254697.1
ACGGCTGGAGTGTGCGCGAGAGAGCGGGTGAGCGGACCGTTCCAGTCCGTGTGTCTCTGTGCGCGTGAGCAGTGGTCTGCCGTCATTCATGGGGATCATGTACGGAGATGGAGACCGGCTCGGACCCCCGCGGAGGGACTGCATGTGTTACCTGGGACCCCCGACCACCTTGATGCCCATCGGAATGCGCAAATCCCCCGAGGTGAGTCCCAGAAGGCTGTCCGACATCAGCCCCCAACTCCGCCAGCTCAAGTACCTGGTGGTGGATGAATCGATTAAAGAGGACCTGAAGTCATCTCGATCAGTTGAGGACATCAACAGCGCGTCCATCGAGGAGAGGATCTTGAGAATCACCGGCTATTATGGCTACCAGCCGTGGAATGCCGTGTATAAGAGGGAGGACCGGCCGAGGGAGAACATCGTGGGCACTGCCGATGGACAGGCGATGGTGGGCGGAGCAGGGGCGGAGTCAGGGACCGGAAGGCAGAAATTAAACTGCTGTGTGCGAGTGACAGCCGTCCAAGTGCGAAAAGCAATATGGGGCGTGGCCATGGTGATGTGCGTGTGCTCGTCGTGGGCAGGCTCCACCCAGCTGGCCAAACTGACCTTCAAGCAGTACGACGCGCCTTTCACTCTCACGTGGTTCGCCACCACGTGGAACTGCCTCTTCTTTCCTCTGTACTACATTGGACATCTGTGCAAGAGTCCTGAGAGACAGACACCAAAACAGAGGTTTAGAGAGTGCTGTCGGTTCTTCGGGGACGATGGACTGACGGCGAAGGTGTTCTTCACTAAAGTGGCTCCTTTTGGCCTGCTGTGGATTATGACAAACTACCTATACCTTCAGGCTCTGAGAAAGATCAACAGCACTGATGTATCGGCCCTCTTCTGCTGTAACAAAGCCTTCGTCTTTCTCCTGTCCTGGATTGTGCTGCGGGATCGCTTCATGGGCGTCAGGATTGTTGCTGCCATTCTGGCCATCGCTGGGATCGTGATGCTGACCTACGCTGATGGCTTTCACAGTCACTCCGTTATCGGCATAACGCTTGTAGTGGCCTCTGCATCTGCCTCTGCCCTCTATAAGGTGCTTTTCAAGCTCGTCTTGGGCAGTGCCAAGTTTGGTGAGGCGGCTCTGTTTCTGACCATTGTCGGAGGCGCAAACTTTGTCTTTATGAGCTTTGTTCCAGTCATACTGTACTTCACACATGTTGAGTACTTCACATCCATTGTTGATCTTCCCTGGGCCTACCTGTGTGGAGTAGCTGGACTCTTGCTAGcatTCAATATTCTGGTGAATTTTGGCATTGCCATTACATACCCTACGCTGATTTCACTTGGAATTGTGCTGAGTGTTCCAGTCAATGCAACTATCGACGTGCTGAAGCATGAGGTCATCTTCAGCGTGGTGCGTCTGGCTGCCACCTGCATCATCTGCCTGGgcttcctgctgctgctgctccctgAGGAGTGGGATACGGTCACCCTGCGCTTCCTCACCACCCTCGCCGACAAGAAGACGGAGGAGCACGGCGAGGAGCTCACGGAGTCCAGCGTCCACACGCGCAGCCGGAGTAGAGCCAACGGAGCCGTATCAATCCCCATggcatga

Function

symbol description
slc35f4 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F4 (solute carrier family 35 member F4).
slc35f3 Involved in thiamine transport. Predicted to be integral component of membrane.

NR:

description
PREDICTED: putative thiamine transporter SLC35F3 isoform X1

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15288 SLC35F3_4; solute carrier family 35, member F3/4

RNA

RNA id representative length rna type GC content exon number start site end site
TU139972 False 774 lncRNA 0.49 2 17374750 17376237
XM_043254696.1 True 1979 mRNA 0.50 8 17376718 17387004
XM_043254697.1 False 1609 mRNA 0.56 8 17375993 17387006

Neighbor

gene id symbol gene type direction distance location
LOC122356833 mdga1,LOC107679144,LOC107676363,LOC107561756 coding downstream 8901 17212933 ~ 17365849 (-)
fhip2a LOC107568115,LOC107679198,LOC107724610,LOC107734297,LOC107676387,LOC107575459 coding downstream 399261 16964295 ~ 16975489 (-)
ablim1a ablim1a,LOC107676391,LOC107724609 coding downstream 412271 16923937 ~ 16962479 (-)
LOC122356703 eif3s6ip,eif3l,LOC107679167,LOC107676390 coding downstream 542510 16827009 ~ 16832240 (-)
vsir LOC107679168,LOC107549146,LOC107724606,LOC107676381,LOC107568522 coding downstream 569609 16795555 ~ 16805141 (-)
LOC122356215 marveld1,LOC107564681,LOC107664302,LOC107736855,LOC107665576 coding upstream 160408 17547414 ~ 17548604 (-)
zfand3 zfand3,LOC107566515,LOC107679194,LOC107724624,LOC107734288,LOC107676388,LOC107561772 coding upstream 311931 17698937 ~ 17713567 (-)
trnav-cac_10 NA coding upstream 332101 17719107 ~ 17719179 (-)
trnav-aac_26 NA coding upstream 332628 17719634 ~ 17719706 (-)
btbd9 btbd9,LOC107724625,LOC107566514,LOC107679175,LOC107734308,LOC107667966,LOC107561768 coding upstream 335425 17722431 ~ 17730987 (-)
G94516 NA non-coding downstream 344687 17022103 ~ 17030063 (-)
G94511 NA non-coding downstream 359093 16984506 ~ 17015657 (-)
G94455 mrpl14,LOC107676385,LOC107679189,LOC107734281 non-coding downstream 780019 16593425 ~ 16594731 (-)
G94453 mlh1 non-coding downstream 805500 16567915 ~ 16569250 (-)
G94425 NA non-coding downstream 855924 16515857 ~ 16518826 (-)
LOC122356952 NA non-coding upstream 245243 17632249 ~ 17672523 (-)
G94608 NA non-coding upstream 334722 17721728 ~ 17722300 (-)
G94619 NA non-coding upstream 403878 17790884 ~ 17791890 (-)
LOC122356989 NA non-coding upstream 505031 17892037 ~ 17900115 (-)
LOC122356279 NA non-coding upstream 516191 17903197 ~ 17910716 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 948215 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 1082371 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 1205546 16009687 ~ 16169204 (-)
G94216 NA other downstream 1489528 15877527 ~ 15885222 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other downstream 1581210 15774777 ~ 15793540 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 1158565 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 1570697 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 1899024 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 2475524 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 2522189 19909195 ~ 19921669 (-)

Expression


Co-expression Network