LOC122356994


Basic Information

Item Value
gene id LOC122356994
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18452872 ~ 18456126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU140300
GGTTCATTTTTGGTGTGTAGAAATTATACACTTTTCAAGCCATACACtaaagtttattttcataagTTGCAACCCGCTTGCAGCGTTTTTCAATGCACAGATCGTCTACACAGATGCTGAGctcCTGGAGATGACTGGACCAAAGCGGAGGGGGGAAAAACAGTGAGTCTGAAGGAGAGCGAGCGCTGAAAAGGTGCTTTGTCCTGGGCTCCAGGTTGACAGAGGTGGACCCGTCAGCGCTTGTGGTTCTAGGCGGACGTCCAGGCCCTCGCTGGCACCGTCTGCAGAGCACACAGCTGGGCTCAACACCTCAACCCGGCCCAGCTACAACTACAACCAGCCACCGCCGATGGAAAAACAAACCAGAGACTCAACCCCCCTGTGAAAAACAAGTACGCTTAGAATACTTTATTACAAAGCTAATATACTCCACATTAAAATTAGTGCAAACtgggtgtaatgtttttaaacacttCATAACATATTagttgcaattaaatgaaaatgtgttggtgtattttaaatgcattacgtTTCTGACCCATGTAAGCagaactattattatatattatattatattatgatttattattattgctattgttgtttttattattaactataatttCATGAATTATAAATAGTTGTAGAGCAAGG
>XR_006252406.1
GGTTCATTTTTGGTGTGTAGAAATTATACACTTTTCAAGCCATACACtaaagtttattttcataagTTGCAACCCGCTTGCAGCGTTTTTCAATGCACAGATCGTCTACACAGATGCTGAGctcCTGGAGATGACTGGACCAAAGCGGAGGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU140300 True 657 lncRNA 0.41 2 18452872 18456126
XR_006252406.1 False 154 lncRNA 0.44 2 18453375 18456126

Neighbor

gene id symbol gene type direction distance location
ftr69 LOC107597643,LOC107679211 coding downstream 69162 18380035 ~ 18383710 (-)
LOC122356930 NA coding downstream 72849 18373868 ~ 18380023 (-)
fndc5a fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678 coding downstream 372266 18073731 ~ 18080606 (-)
rhd rhd,LOC107597651,LOC107679155,LOC107724598 coding downstream 472763 17972876 ~ 17980109 (-)
rsrp1 LOC107597652,LOC107679156,LOC107724580 coding downstream 488002 17960037 ~ 17964870 (-)
fgfr2 fgfr2,LOC107724577 coding upstream 2072 18458198 ~ 18504277 (-)
LOC122356087 ate1,LOC107655512 coding upstream 118658 18574784 ~ 18585116 (-)
LOC122356886 ate1,LOC107724575,LOC107679187,LOC107655512,LOC107597680 coding upstream 250223 18706349 ~ 18743542 (-)
LOC122356860 NA coding upstream 321542 18777668 ~ 18780239 (-)
slc29a1a slc29a1a,LOC107655740,LOC107733356 coding upstream 324249 18780375 ~ 18809580 (-)
G94826 marcksl1a,LOC107597644,LOC107724621,LOC107679202,LOC107734268,LOC107655702,LOC107585455 non-coding downstream 81521 18218993 ~ 18371351 (-)
G94734 NA non-coding downstream 311088 18141523 ~ 18141784 (-)
G94731 NA non-coding downstream 315231 18137427 ~ 18137641 (-)
G94728 NA non-coding downstream 316258 18134445 ~ 18136614 (-)
G94723 NA non-coding downstream 332256 18119803 ~ 18120616 (-)
G94843 NA non-coding upstream 84259 18540385 ~ 18540700 (-)
G94845 NA non-coding upstream 87526 18543652 ~ 18543984 (-)
G94849 NA non-coding upstream 167357 18623483 ~ 18627312 (-)
G94941 NA non-coding upstream 460119 18916245 ~ 18916650 (-)
G94961 NA non-coding upstream 622434 19078560 ~ 19078839 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 1065866 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 2026337 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 2160493 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 2283668 16009687 ~ 16169204 (-)
G94216 NA other downstream 2567650 15877527 ~ 15885222 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 89445 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 501577 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 829904 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 1406404 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 1453069 19909195 ~ 19921669 (-)

Expression


Co-expression Network