ypel5 (ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471)


Basic Information

Item Value
gene id ypel5
gene name ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22326705 ~ 22329292 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU141850
GGATGTTGATATAAAGTCTGGAGGAAGAGCAGGAAGAAAACATCAGCGCGAGCTCGAGCTGTTTAACGGAAATATACAAAACCTCGATCGGAAGCGGCTGGTGAGTTTAAGGAGATCATGGGCCGCATCTTCTTGGATCACATCGGCGGGACGCGTCTGTTCTCGTGCGCTAACTGTGACACCATCCTGACCAACCGCTCCGAGCTGATCTCCACCCGCTTCACCGGCGCCACCGGACGGGCCTTCCTCTTCAACAAgGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGCGTGATGCTGACCGGCAGGCACATGGTCCGAGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTCGCCACCGAGGACAGCCAGCGCTACAAAGAGGGCCGCGTGATCCTGGAGCGAGCGCTGGTGCGTGAGAGCGAGGGCTTCGAGGAGCACGTGCCTTCAGACGCCTCCTGATCCTCCAGGACTGATTCAGATGCACAATCTCTTCTGTCATTGGCTAAAACAAACGCGGCACGTAATCACCAGAACATCTGCTCCTGAAGGATGGAGATTATTTGACAGAAATGCATACGTTTGTGGCTTTTTTCACACGTCTTTCCTCCGTATGGAGTTAGGTTTGGGCCGCTCCGTCTGCTGTTACTGctggtttgttttgttcataaCTTTGTGAATGCTCTGTATGGATAtccatataaacaaatataaatttgcTCAATAATGAGTTTCTAAAAGTCTCTGACAACATAGATGATTACAGAATGAATGCATCTAGAAGTTTGAGCACACTCTTATTGTTGATTCTTCTGGATGTTTGTGAAAGCCTGACATGAACAGCAGACGGCCTTCTGGCTCAAACGTAACTCCATACAAACATCTATAAGATCTCGTGTTAGTATTAGAGTTGTTGGACTAACATCACCTTCCCTGGAGACGAGGGTTAAAGAGCCGGATGATGAAGGCCACCGAAGTGATGTAGGTGGAGAAGTTGAGGACCATTGCAAGCCTTCTTTGTCATCCTTTAATAACGGAGCGGTGCTTCTCTACACCCGTGTGACTCCTGAAAGAGTTTAGATCACACCCGTCTGTGTTACTTCTCGCTGATTCTCGTCTTCTTTTGTGATTTCTTCAAGACTTTGTGGATCGTTCTGGTCTCTAAACTGAGTTCAAGCTCAGCATGTTGGTCTTCACCGTTCTGTTTCTCTCGGTCCTTGGATTAAAGCCGCTTCTGTTGATTATTGTGTTCTAAAGCTCAGTTGTGTTTAGCATGAGGTTCATTGTGTTATATTTGATGTCTGACTTGAAGAATAAATCATTTCCTAAAG
>XM_043254651.1
CGCAACTGCGTCATCACGTACGTCACCGCGCCGGATGTTGATATAAAGTCTGGAGGAAGAGCAGGAAGAAAACATCAGCGCGAGCTCGAGCTGTTTAACGGAAATATACAAAACCTCGATCGGAAGCGGCTGGTGAGTTTAAGGAGATCATGGGCCGCATCTTCTTGGATCACATCGGCGGGACGCGTCTGTTCTCGTGCGCTAACTGTGACACCATCCTGACCAACCGCTCCGAGCTGATCTCCACCCGCTTCACCGGCGCCACCGGACGGGCCTTCCTCTTCAACAAgGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGCGTGATGCTGACCGGCAGGCACATGGTCCGAGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTCGCCACCGAGGACAGCCAGCGCTACAAAGAGGGCCGCGTGATCCTGGAGCGAGCGCTGGTGCGTGAGAGCGAGGGCTTCGAGGAGCACGTGCCTTCAGACGCCTCCTGATCCTCCAGGACTGATTCAGATGCACAATCTCTTCTGTCATTGGCTAAAACAAACGCGGCACGTAATCACCAGAACATCTGCTCCTGAAGGATGGAGATTATTTGACAGAAATGCATACGTTTGTGGCTTTTTTCACACGTCTTTCCTCCGTATGGAGTTAGGTTTGGGCCGCTCCGTCTGCTGTTACTGctggtttgttttgttcataaCTTTGTGAATGCTCTGTATGGATAtccatataaacaaatataaatttgcTCAATAATGAGTTTCTAAAAGTCTCTGACAACATAGATGATTACAGAATGAATGCATCTAGAAGTTTGAGCACACTCTTATTGTTGATTCTTCTGGATGTTTGTGAAAGCCTGACATGAACAGCAGACGGCCTTCTGGCTCAAACGTAACTCCATACAAACATCTATAAGATCTCGTGTTAGTATTAGAGTTGTTGGACTAACATCACCTTCCCTGGAGACGAGGGTTAAAGAGCCGGATGATGAAGGCCACCGAAGTGATGTAGGTGGAGAAGTTGAGGACCATTGCAAGCCTTCTTTGTCATCCTTTAATAACGGAGCGGTGCTTCTCTACACCCGTGTGACTCCTGAAAGAGTTTAGATCACACCCGTCTGTGTTACTTCTCGCTGATTCTCGTCTTCTTTTGTGATTTCTTCAAGACTTTGTGGATCGTTCTGGTCTCTAAACTGAGTTCAAGCTCAGCATGTTGGTCTTCACCGTTCTGTTTCTCTCGGTCCTTGGATTAAAGCCGCTTCTGTTGATTATTGTGTTCTAAAGCTCAGTTGTGTTTAGCATGAGGTTCATTGTGTTATATTTGATGTCTGACTTGAAGAATAAATCATTTCCTAAAGTGGAA

Function

symbol description
slc30a10 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within manganese ion homeostasis and manganese ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in hypermanganesemia with dystonia 1. Orthologous to human SLC30A10 (solute carrier family 30 member 10).
ypel5 Predicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein yippee-like 5

GO: NA

KEGG:

id description
K23339 YPEL5; protein yippee-like 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU141850 False 1352 TUCP 0.48 3 22326710 22329260
XM_043254651.1 True 1389 mRNA 0.48 3 22326705 22329292

Neighbor

gene id symbol gene type direction distance location
slc30a10 slc30a10,ypel5,LOC107672346,LOC107601641,LOC107568027,LOC107683860,LOC107568031 coding downstream 3196 22317240 ~ 22323509 (-)
zmp:0000000755 LOC107672344,LOC107742077,LOC103371009 coding downstream 43059 22254179 ~ 22283646 (-)
ptk7b LOC107672339,LOC107577581,LOC107742082 coding downstream 99701 22185040 ~ 22227004 (-)
srfb LOC107689574,LOC107570739 coding downstream 143531 22157665 ~ 22183174 (-)
pwwp2b pwwp2b,LOC107670800,LOC107754010,LOC107744923,LOC107653191 coding downstream 275019 22041455 ~ 22051686 (-)
LOC122356263 ypel5,slc30a10,slc30a1b,LOC107568027,LOC107672346,LOC107601641 coding upstream 155997 22485289 ~ 22489323 (-)
LOC122356266 LOC107671403,LOC107756883,LOC107688264,LOC107592480,LOC107592170 coding upstream 473426 22802718 ~ 22819457 (-)
c1d c1d,LOC107551342,LOC107754748,LOC107717833,LOC107702672,LOC107660245 coding upstream 805526 23134818 ~ 23136642 (-)
LOC122356317 psap,LOC107575616 coding upstream 827810 23157102 ~ 23167091 (-)
mrps6 LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615 coding upstream 838581 23167873 ~ 23168903 (-)
G95941 NA non-coding downstream 22924 22303305 ~ 22303781 (-)
G95934 NA non-coding downstream 82228 22174326 ~ 22244477 (-)
G95933 NA non-coding downstream 96166 22228184 ~ 22230539 (-)
G95922 NA non-coding downstream 190314 22135936 ~ 22136391 (-)
G95902 NA non-coding downstream 206263 22114696 ~ 22120442 (-)
G95971 NA non-coding upstream 93827 22423119 ~ 22424220 (-)
G95937 lbh non-coding upstream 135854 22465146 ~ 22471340 (-)
G95984 NA non-coding upstream 191724 22521016 ~ 22521948 (-)
G95985 NA non-coding upstream 192663 22521955 ~ 22523449 (-)
G95990 NA non-coding upstream 291750 22621042 ~ 22621428 (-)
G95936 lbh other downstream 29478 22296341 ~ 22297227 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other downstream 76392 22231449 ~ 22250313 (-)
G95932 NA other downstream 88135 22236104 ~ 22238570 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other downstream 169846 22151742 ~ 22156859 (-)
LOC122357128 NA other downstream 182735 22137388 ~ 22143970 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other upstream 42275 22371567 ~ 22448011 (-)
G95972 NA other upstream 91644 22420936 ~ 22422869 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other upstream 492689 22821981 ~ 22823259 (-)
G96053 NA other upstream 664745 22994037 ~ 22995599 (-)
si:ch211-130h14.4 LOC107660236 other upstream 1100354 23429646 ~ 23444063 (-)

Expression


Co-expression Network