G96041 (LOC107688263)


Basic Information

Item Value
gene id G96041
gene name LOC107688263
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22831478 ~ 22833684 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU141983
AAAACACGTAAACATGAGAAAGGAGTAGAGAGTTTATGTAGCTTAACTTCTGTTCAACGTCATACTGCGTTACCGAAATATCacataaactttatttattatatttttatactgtaacaGggtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggggttCAGTCATGCATCAGATTGTTGGGACTGTGATGTTGGGCTGATGTTCAGCACAGGACTGAAGTTAGTCAGAACAGAATGTGCTCAATACAGGAGCATGTGGATACTCCTTAGATTTGCATAACAGGCAAAGTCAGATATGAATGAAAGCATGGCCAAAGGCTTTTTTCTGTGCCTGCTGCTTTGGCTGCTTGTACCAGCGGCCAGATGCCAGAACAGAAGACAGTCTGGAGAAACTCTGAACCTCACCACAAAACAGGACAATGAGTTAGTATGCACTCTAGAGATCGCGTTCATCCTGGACAGCTCAGAGAGCGCGAAGGGCCTTCTGTTCGACCGAGAGAGCGTTAGTGCGCTCCTTCAGCAAGCGCGTGGCCCAGATGCAGGTGTCTGACTGGCATCTGAAAACCCGTATGGCGCTCATCTACTACAGCAGCTCGGTCCACATCGACCAGCACTTCAGAAACTGGCAGGACCTTGACGTCTTCCTGGGCCGACTGGAGGACGCCATCTACATCGGC

Function

NR:

description
PREDICTED: collagen alpha-1(XXVIII) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU141983 True 691 TUCP 0.48 4 22831478 22833684

Neighbor

gene id symbol gene type direction distance location
LOC122356585 lbh,LOC107568035,LOC107742078,LOC107672345,LOC107601639 coding upstream 365976 22460140 ~ 22465502 (+)
LOC122356261 stk32c,LOC102790870 coding upstream 397529 22425322 ~ 22433949 (+)
LOC122356795 kiaa0907,LOC107570803,LOC107679549,LOC107698184 coding upstream 406956 22419315 ~ 22424522 (+)
npas4l NA coding upstream 460850 22365791 ~ 22370628 (+)
klhdc3 klhdc3,LOC107601643,LOC107672343,LOC107742079 coding upstream 468252 22333749 ~ 22363226 (+)
etaa1b LOC107754755,LOC107702690 coding downstream 195904 23029588 ~ 23034512 (+)
slc29a3 LOC107754759,LOC107551349,LOC107660222,LOC107702689,LOC107717832,LOC107582674 coding downstream 303377 23137061 ~ 23148093 (+)
abcg2c abcg2c,LOC107702685,LOC107754757 coding downstream 314538 23148222 ~ 23157549 (+)
nolc1 nolc1,LOC107660219,LOC107717830,LOC107754756,LOC107551338,LOC107702684,LOC107564530,LOC102780538 coding downstream 336295 23169979 ~ 23180951 (+)
LOC122356107 NA coding downstream 474940 23308624 ~ 23312940 (+)
G96033 NA non-coding upstream 10048 22820626 ~ 22821430 (+)
G96002 NA non-coding upstream 146517 22684691 ~ 22684961 (+)
G95994 NA non-coding upstream 173577 22657670 ~ 22657901 (+)
G95993 NA non-coding upstream 195077 22636164 ~ 22636401 (+)
G95989 NA non-coding upstream 291948 22539241 ~ 22539530 (+)
G96049 col28a1b,LOC107756881,LOC107688263,LOC107578563 non-coding downstream 11003 22844687 ~ 22845889 (+)
G96051 NA non-coding downstream 34257 22867941 ~ 22868257 (+)
G96052 NA non-coding downstream 160353 22994037 ~ 22994576 (+)
G96054 NA non-coding downstream 162985 22996669 ~ 22997188 (+)
G96056 NA non-coding downstream 169922 23003606 ~ 23004573 (+)
LOC122356265 ica1,LOC107688219,LOC107592479,LOC107756897,LOC107592125,LOC107726695 other upstream 29515 22794922 ~ 22801963 (+)
G95996 NA other upstream 172166 22658913 ~ 22659312 (+)
LOC122356588 lclat1,LOC107568033,LOC107601640,LOC107742083 other upstream 348253 22473515 ~ 22483225 (+)
G95886 NA other upstream 381614 22448760 ~ 22449864 (+)
LOC122356631 lbh,LOC107742078,LOC107672345,LOC107568035,LOC107601639,LOC106518440 other upstream 534251 22288495 ~ 22297227 (+)
G96048 LOC107592526,LOC107756881,LOC107688263 other downstream 7168 22840852 ~ 22843692 (+)
mcu mcu,LOC107702682,LOC107660217,LOC107754763,LOC107564525,LOC107551352 other downstream 370782 23204466 ~ 23308295 (+)
G96244 NA other downstream 1273439 24107123 ~ 24107831 (+)
G96307 LOC107694985,LOC107716324,LOC107673922,LOC107585326,LOC107588706 other downstream 1459210 24292894 ~ 24354570 (+)
sdhaf4 sdhaf4,LOC107707755,LOC107694544,LOC107588668,LOC107585375,LOC107673877,LOC107716321 other downstream 1681717 24515401 ~ 24516497 (+)

Expression


Co-expression Network