LOC122356087 (ate1,LOC107655512)


Basic Information

Item Value
gene id LOC122356087
gene name ate1,LOC107655512
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18574784 ~ 18585116 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254551.1
atttcatttataataatgattattgtTCTGTCTTTGTCTTTCGCTCTCCTCCAGGCTGAGACCACTCCCGACGGCCCTGATGTGGGCTACGGCTCGTTTCATCAGCAGTATTGGTTGGATGGCAGAATAGTAGCTGTAGGAGTTGTGGACATCCTTCCCTCCTGTGTGTCGTCCGTGTACCTGTACTACCACCCCGACTTCTCCTCGCTCTCATTGGGCACCTACTCTGCTCTCAGGGAGATTGCCTTCACCAGGCAGTTGCAGCAGCAGTCGCCCAAACTGTCCTACTACTATCTGGGTTTCTACGTCCATTCATGTCCCAAGATGCGCTATAAGAAGTCATGACAAATTCAGCGATCA

Function

symbol description
ate1 Predicted to enable arginyltransferase activity. Predicted to act upstream of or within protein arginylation. Orthologous to human ATE1 (arginyltransferase 1).

NR:

description
arginyl-tRNA--protein transferase 1

GO:

id name namespace
GO:0016598 protein arginylation biological_process
GO:0004057 arginyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254551.1 True 360 mRNA 0.50 3 18574784 18585116

Neighbor

gene id symbol gene type direction distance location
fgfr2 fgfr2,LOC107724577 coding downstream 70507 18458198 ~ 18504277 (-)
ftr69 LOC107597643,LOC107679211 coding downstream 191074 18380035 ~ 18383710 (-)
LOC122356930 NA coding downstream 194761 18373868 ~ 18380023 (-)
fndc5a fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678 coding downstream 494178 18073731 ~ 18080606 (-)
rhd rhd,LOC107597651,LOC107679155,LOC107724598 coding downstream 594675 17972876 ~ 17980109 (-)
LOC122356886 ate1,LOC107724575,LOC107679187,LOC107655512,LOC107597680 coding upstream 121233 18706349 ~ 18743542 (-)
LOC122356860 NA coding upstream 192552 18777668 ~ 18780239 (-)
slc29a1a slc29a1a,LOC107655740,LOC107733356 coding upstream 195259 18780375 ~ 18809580 (-)
LOC122356218 vip,LOC107655780,LOC107585469,LOC107597641,LOC107679148 coding upstream 245152 18830268 ~ 18832948 (-)
LOC122356839 acoxl coding upstream 390715 18975831 ~ 19008866 (-)
G94845 NA non-coding downstream 30800 18543652 ~ 18543984 (-)
G94843 NA non-coding downstream 34084 18540385 ~ 18540700 (-)
LOC122356994 NA non-coding downstream 118658 18452872 ~ 18456126 (-)
G94826 marcksl1a,LOC107597644,LOC107724621,LOC107679202,LOC107734268,LOC107655702,LOC107585455 non-coding downstream 203433 18218993 ~ 18371351 (-)
G94734 NA non-coding downstream 433000 18141523 ~ 18141784 (-)
G94849 NA non-coding upstream 38367 18623483 ~ 18627312 (-)
G94941 NA non-coding upstream 331129 18916245 ~ 18916650 (-)
G94961 NA non-coding upstream 493444 19078560 ~ 19078839 (-)
G94978 NA non-coding upstream 584752 19169868 ~ 19170089 (-)
G94997 mertk,LOC107724611 non-coding upstream 616727 19201843 ~ 19208269 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 1187778 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 2148249 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 2282405 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 2405580 16009687 ~ 16169204 (-)
G94216 NA other downstream 2689562 15877527 ~ 15885222 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 372587 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 700914 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 1277414 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 1324079 19909195 ~ 19921669 (-)
LOC122356211 gng4 other upstream 1679610 20264726 ~ 20275386 (-)

Expression


Co-expression Network