slc30a10 (slc30a10,ypel5,LOC107672346,LOC107601641,LOC107568027,LOC107683860,LOC107568031)


Basic Information

Item Value
gene id slc30a10
gene name slc30a10,ypel5,LOC107672346,LOC107601641,LOC107568027,LOC107683860,LOC107568031
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22317240 ~ 22323509 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254650.1
tatataatacgatatttatataattcttctccctcagattccaggtTTTCTAATAGTCGTATCTCAGATATGGTCTGATCAGAAGAAACCAGGCATCGATGGAGAGATGGTTTCTTCAgcttcagatgatgtataaatctcctTCCGACGCGTGTTGCTCCAGGGTGTTTATAAAAACGagactaatttatttattcgtttatatatatattttaattgcattcatttatttgaacgCGTTTCGCTGGAGGACTGGAGGACGTGGTGACATCAGTGACCTGTCTTCAGTTGTTTTCTTCACCTGTGCTGTGCTGCTTTAAACAGATCCTCTGGGTTTTGATTTTCCAGCAAACACCAAACCAACGAAAAACACGTGTGtcgtaaaagaaataaagattgCGAATTTTCTCAGTTGTCTGAGGACACGAGGAGAAACAAACCTTGACTATCAGGATGCGAATCAGCTCGTATAGAGTTAGATAGGAGCGCTTGTTTATGATGGAGATGAAAGCCTATCTTATCCGGCGGGGCGTGCCAGAGGCTGTTTAATGTGTGACAGCGTTTACAGCGCGCGCTGGATAAATAACCCCGCTGACCTGCATggaactaactaactaaccaaCCCAGTCAGCAGAAAAAACCAGCTGGATGACTGTTCAAAGGTGACAATGACAAGAATCCGCTGAGGAGGAGACGCGCGCACAATCGCCAGAGACCTCAAGGCAAGCGGCGCGGCGCGTCACCATCGCGTGGAAAAGTGCCAACTCATGATCGCCAACGTGAGACAGAAGGTGAAGAGCAGAGACAGGAGGAGGTGAAGAGCAGAGAGACGGACGGGCAGGTGAGCATCTCtccgcacgcacgcacgcacgcgatCATGGGGCGCTACAGCGGCAAGACGTGCCGCCTGATCCTGATGCTCGTCATCACCGTCATCTTCTTCGTGGCGGAGATCGTGGCGGGGTACATGGGCAACTCCATCGCGCTGGTGTCGGACTCCTTCAACATGCTGTCGGACATTCTGTCGCTGTGCGTCGGGCTGACGGCGGCCCGGGTGTCGCGGCGCGCGAGCTCGGGGCGCTTCACGTACGGCATGGGCCGCGCGGAGGTGGTGGGCGCGCTGGCCAACGCCGTGTTCCTCGCCGCGCTCTGCTTCTCCGTGTCCATGGAGTCTCTGAAGAGGCTCGCCATGCCGCAGGCCATCGACGACCCGCCGCTGGTGCTGATCGTGGGCTCGCTCGGGCTCGCGGTGAACGTGGTCGGGCTGCTCATCTTCCAGGACTGCAGCAGCTGCCGGCGCGCGACGCGGAAGAACGACGCCCCTGTGCCGCGCGAGGCGGAGGAGGACGCGGCGGCGGCGGAGGAAGAAACAGGCctgcaggagaagaagaagccTGAGAGCGACGGGCCTCCGCTAAACATCCGCGgTGTACTGCTTCATGTTCTGAACGACGCGCTGGGCtcggtggtggtggtggtggccTCGGCTCTGTTCTACGTGTGGCCCCTGGCCCCTGAGAGCCCGTGTAACTGGCAGTGTTACGTGGACCCCAGTCTGACGCTGGTCATGGTGGCCATCATCATGTCGTCAGCCGCTCCTCTGGTCAAAGAAACGACGGGGATCCTGCTGCAGATGAGTCCTCCGGACCTGCAGCTCAGCTCTGTCTtggaGAGTGTGTGTAAGCTCCCGGGCGTGGCGAGCGTTCACGAGGCTCACGTCTGGGAGTTATCTAAAGGACGAAACGTGGCCTCGCTGCACGTGAAGGTGAGCGCTGACCTGCAGGATTCGACCCTTCAGACTCAGATCCAGCAGCTGTTCCAGCGCGCCGGGGTCCACAGCGTCACGGTTCAGCTGGAGCGAGCCGACGTAGAGATGTCCTGCTGTCCTCCGGCCTCCAGAGACGTGACCGTCGACATGCTGCCCGAGAAAGAGAAGCAGATATCAGctaaacacacagagagcacCAAGTTCTGAAGGACTGgaacacagaacaaacagacCTGGTTTTATTCCTCCTCACGACTGTGCCTCGCTGCCCTTTAAGACTCCAGCTAATGATTCCTAGTAATTGCACTCGGTTAGTTTGAGACGCGAGTTTGACGGGACCCAGATCAACAGTCGAATTATTCAGCAGCTTATTTATTGCTCTGAAAGAGAGACATGTCCAGCTCATATTTCAGCccaaaataacagaataaaaaaacacacaaatcaagCCAAAGTCTCACGAGTGTGTAAAGAATGTAAACATGAAGATAGTATTTGCTGTAGTGCCTTTAATGCTTACGCTGATGTATGTAATAAATAGTAATCTATTACagtaatatgcaaaatattttttaaattagttccttttgattttggggtgaaatttAACCTGGACATAGTTTCAAGAGATTTGTTCTGATAGCGTGTTTGCATTCCTTGCTGTTATTTATGACATTTTGCTCTTAATGATCTTTATAACTTGCTAATTCAGGGAAATATGAttagttgttgttgtgtgtgagtgtgtgtgtgtgtgtgtgtgtttgaaagacAATCAAATGTACTTCAAAACTGTATACACTTATATTAAACATTCTGGTTGAAATCAAA

Function

symbol description
slc30a10 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within manganese ion homeostasis and manganese ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in hypermanganesemia with dystonia 1. Orthologous to human SLC30A10 (solute carrier family 30 member 10).
ypel5 Predicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5).

NR:

description
PREDICTED: zinc transporter 10-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K16264 czcD, zitB; cobalt-zinc-cadmium efflux system protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254650.1 True 2599 mRNA 0.51 4 22317240 22323509

Neighbor

gene id symbol gene type direction distance location
zmp:0000000755 LOC107672344,LOC107742077,LOC103371009 coding downstream 33594 22254179 ~ 22283646 (-)
ptk7b LOC107672339,LOC107577581,LOC107742082 coding downstream 90236 22185040 ~ 22227004 (-)
srfb LOC107689574,LOC107570739 coding downstream 134066 22157665 ~ 22183174 (-)
pwwp2b pwwp2b,LOC107670800,LOC107754010,LOC107744923,LOC107653191 coding downstream 265554 22041455 ~ 22051686 (-)
LOC122356328 inpp5a,LOC107744939 coding downstream 292630 21908358 ~ 22024610 (-)
LOC122356263 ypel5,slc30a10,slc30a1b,LOC107568027,LOC107672346,LOC107601641 coding upstream 161780 22485289 ~ 22489323 (-)
LOC122356266 LOC107671403,LOC107756883,LOC107688264,LOC107592480,LOC107592170 coding upstream 479209 22802718 ~ 22819457 (-)
c1d c1d,LOC107551342,LOC107754748,LOC107717833,LOC107702672,LOC107660245 coding upstream 811309 23134818 ~ 23136642 (-)
LOC122356317 psap,LOC107575616 coding upstream 833593 23157102 ~ 23167091 (-)
mrps6 LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615 coding upstream 844364 23167873 ~ 23168903 (-)
G95941 NA non-coding downstream 13459 22303305 ~ 22303781 (-)
G95934 NA non-coding downstream 72763 22174326 ~ 22244477 (-)
G95933 NA non-coding downstream 86701 22228184 ~ 22230539 (-)
G95922 NA non-coding downstream 180849 22135936 ~ 22136391 (-)
G95902 NA non-coding downstream 196798 22114696 ~ 22120442 (-)
G95971 NA non-coding upstream 99610 22423119 ~ 22424220 (-)
G95937 lbh non-coding upstream 141637 22465146 ~ 22471340 (-)
G95984 NA non-coding upstream 197507 22521016 ~ 22521948 (-)
G95985 NA non-coding upstream 198446 22521955 ~ 22523449 (-)
G95990 NA non-coding upstream 297533 22621042 ~ 22621428 (-)
G95936 lbh other downstream 20013 22296341 ~ 22297227 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other downstream 66927 22231449 ~ 22250313 (-)
G95932 NA other downstream 78670 22236104 ~ 22238570 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other downstream 160381 22151742 ~ 22156859 (-)
LOC122357128 NA other downstream 173270 22137388 ~ 22143970 (-)
ypel5 ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471 other upstream 3196 22326705 ~ 22329292 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other upstream 48058 22371567 ~ 22448011 (-)
G95972 NA other upstream 97427 22420936 ~ 22422869 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other upstream 498472 22821981 ~ 22823259 (-)
G96053 NA other upstream 670528 22994037 ~ 22995599 (-)

Expression


Co-expression Network