crtac1b (crtac1b,crtac1,LOC107665558,LOC107702729,LOC107601025,LOC108443504)


Basic Information

Item Value
gene id crtac1b
gene name crtac1b,crtac1,LOC107665558,LOC107702729,LOC107601025,LOC108443504
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15609866 ~ 15632570 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254712.1
ATGTCAGCATGGATATTACTGCTCACTGTGGGTGTTTCTGTCCTGGGACTGTCCTGGGGTCAGCGGACTGAACCCATGTTTGCTTCAGTAACTCAGAATGTTTTCCCGCCGGACTATGATAATAACCCCACACAGCTCAACTACGGCGTGGCAGTGACCGACGTGGATGGAGACGGAGATCTGGAGATGTTTGTGACGGGctACAATGGCCCAAATCTGGTGCTGAAATACGACAAGTTTAAGAAGAGGCTTGTTAACATCGCGGTTGACAACCGCAGTTCTCCGTATTATGCACTGAGAGATCGACAGGGCAATGCCATCGGAGTGACAGCATGTGACATAGATGGTGACGGCAAAGAGGAAATTTACGTCCTCAACACTAATAACGCCTTCTCAGGGAGAGCAACGTACACCGACAAGCTCTTTAAGTTTCGTAATGGGCGGTTCGAGGATCTCCTGAACGATGACATAAATGAACATAGAGACGTCGCCAATCGCGTGGCTGGCCGGTCAGTCGCCTGTGTGGACAGAAAGggAACAGGCCGCTATTCCATCTACATTGCCAACTATGCCAGCGGAACTGTAGGTCCACATGCTCTGATTGAAATGGATGAAAGCTCAAGTGACCCTTCCAAGGGAATCATCGCCCTGATAAACGTGGCTGAGCAGGCCGGAGTCAACAAGTTCACAGGCGGACGGGGGGTCGTGGTCGGTCCCATCCTCAGTCAGACCCTCCCTGACATTTTCTGTGACAATGAGTACAGCCCTAACTTTCTGTTTCGCAACAACGGAGACGGTACGTTTGCAGATGTGGCGGCACAAGCGGGGGTCGATGACCCGATGCAGCATGGCCGCGGAGTGGCTCTAGCAGATTTTAATCGGGATGGCAAGACTGACATTGTCTACGGAAACTGGAACGGGCCGCATCGTCTGTTCCTACAACTCAGCAATAATCGCAAGCAAAGGTTTAAGGACATCGCCACACAGAAGTTTTCCATGCCATCTCCTGTTCGCACCGTCATCGCAGCCGACTTTGATAATGACAACGAACTGGAGGTTTTTTTCAACAACATTGCCTACAGAGGACCTTCAGCCAACAGACTGTTCAGAGTTTCTCGGAGAGAACACGGAGATCCACAGATCGAGGAGCTGAACGTCGGGGAGGCCGCCGAACCAGAGGGACGGGGAACCGGAGCAGCCGTGACTGATTTTGATGGAGATGGACAGCTGGATCTTCTGGTGACGCACGGGGAAAGTGCAGCTCAGCCCATCTCAGTGTATCGAGTCACTCAGGGCTCGTCTAATAAATGGCTCCGAGTGATTCCACGCACGCAGTTTGGGGCTTTTGCTCGTGGGGCAAAGGTGAAAGTCTACACCAAGCGAAACGGCCCTCACATGCGCATTATAGACGGAGGATCAGGGTACTTGTGCGAGATGGAGCCAGTGGCTCACTTCGGACTCGGGAAAGATGTGGCCACCAGTGTGGAGGTGTTCTGGCCAGATGGATGTTCTGTGGCGAGAGCTCTGGAGCCCAGCGATATGAACAAAGTGATAGAGATCTATTACCCTGAGAATGAGGAAGAGGCGACCCAAGTGGTGAAGATCGAGTGTGGACCGGGATTTGAGGTCAATGAAAATGGCCGTTGCACTGACCAAGATGAGTGCACACAGTTTCCGTCTGTCTGTCCCTCTGAGCGACCTGTCTGCACCAACACCTACGGGAGCTTCAAGTGCCGTGCAAACAAGAGGTGTAACCAAGGATACGAGCCCAATGACGAAGGGACAGCATGTGTAGCCCAGGTAGCATATTTTGGAGGAAACAGATCCTCAGCCTCTAAGCTCTTGGCGTCCCATCTTTGGCCTCTCATACTAACTCTTCTCGCTGTCTTTACTGCTTGCTTGGGGGCATGAAGGGCAGTGCCTCTCCCCTCTCCTGACATCTCCCACCCTGCTTGGTCTCCGATTCTCcgctttcctttcttttttcgcACTGAGGTGTTTGGGAGTCAGCTGTAAAACGAACTCTCCATGGACCTGTCGCTCTTGCAATGTCGTCACTAACAGACCTGTAGAAATAACGCTTCGCTTTCCAGTCGGGAACCACATAAGATCCctgtttttcagataaagacAAGTATTCCCACACAAAGATCTTCATGTTCATCAACCGTGATGTGGGATAAGATTGCGATTGTAATGATCTTAGCGAAAGGCCGTGTCCCAGCGTGTTACGGGCAATTATGTGTTCTAGCGCATTCAGTCTCAAATCGGCAGCAGCGTGCTAGCAGGTTTTCCAGGAGAGCATATGCCGGGCCATCTGTTTCACGCAAGGTTGCATTCCTTGTGCTCTGAATAATACATTCACGAGAGTCGTACCATACACTTTTGACCCTCGCCAGCACTCACGACTGCCCTTAGGATCGGTGCATGTTTTTGGCATGGACGAGTTTCATTTAGCAAAATGTTGTTCAGATTTCTACATGTGGGATTTCACAGCGATCTAGCTGCAGAAACACAGGCCCAGACCACATTGTGAagtaaaactttcatttttaatcatgtttgATGTTCTCAGCTTTAAATACTACAATAGAAATAAGCCAAGGTTTCATTTGCGTGTTGGTAGTCGCTTTGATAGGATATGATGTCTTTTTATAATTTGCTATGGCCATAACcaaaaacttaatattttttttcttttagatattttcttttaaatattttaacttctGTCAGTGGccattgttcaaaaaaaaaccccttaaAAGTAGTCCATACATCTGTGCAGTCAAGACAAATAATAGTTTTGTGTGAGAAATAAgctgatattttaaaagattggCTAATGCATATTGTATATACTTTGAAAATGTGTGAATACAATGAAAATTATTTGGTGTAGGATTTATTTGAATCAATTGTCCCTAAAAATTTAActcaatttaatacaatttcaattttgaagtagaaatatgaactgtttttttcctcatgtgaACCAttgtaaattgattttttttttttttttttaggcaaacatattttttatatatttttttttattattcacacCTTCACTTTAGTTTTAAACTtttatgctgttatttattttaatagaacaTAGAAAAGAATCTTcacaaagctttttttccccaaaaaactaaaaccaccccccaaaacaataatatacatACTTTAAAAGATCATATTGTGTGAAAAACAGACCAAAGTTtaggtaatttttttaatgaaaatgatggtttctcacacaaagcttGCCTGTGGCTTCTGAAATCTGGAAAGATAGCACATAATTCATAAGGAccacttttattgtgttttgtttagttcCTTTTAAAGGATAAGTAAATACACAATGACTAAATTTTATTGGTGagtgaactaaccttttaagtcattattcactGGTAATGGCTTTGGATTTTCCCCTTATTCTAAAGCGGTCGGCTTAGTAAATGCATCACTATGTATTGtagatgtttcttttttttcattcatttttataaattgatttaatttagcattttcaaCCTTAGTTATTGGGATTGCTATGCAGAATATTCACCCAGGGTTAATGAACCGTCTGCGGCTCAAtgaaaaaggcattttaaaatgcagtacGAGCTCTGTTTGCTTTGGATGTAAATATCATTTCCTACAGAACGTCGTTGACTGGAATGAGACCGCTTATACGGGATCACCGATTTGCCGCAGAGCTCAGAATCCACATTcgctgcattttttaaaacatcgtGTATTGTCATAACTGGACTCGATGCTTTCGAACAGTCGCACCAGTTAAATTTGACATGAATTCACCGGTCTTTGATGGAGGTGTTAAATAGCTTCTGAACTGACTCACGATGTGTGCGTTGGCTGAAGACCCCTCAGTCTCCAGGGGCGAATATAgattctctttattttattacgcCGTTCTAATTTTCCATGTCATGACTCAGACGAAACATGTGCCGACTGCTTCGGGAAAAACGTCAGATCTCACAAAAGCTGACAGATGCCacctataattattatttaaatgatacatGTAGTTAGAAAGCAGATTAAATCAAGCTTACCTCAGTGTCATGGTTACAAGCAAAGGCACGGTGTGGAATCTCAATAAATGCATGTCGTGGTGAAGGGATACGTGAAAATACGAGCTGTCTTTGTAATGTCTGCCAAAGCGATTCTGTTGGAAATTCCAGCATGAGTTTCTATGCTAGTCTAGAGCGGTTCGAGCCGCTTAACCAGTAAAAAGATTGGTTAAGCTGGTTAAGAAGCTTGGTGGGCTGCAGACCGGCATGCAAAACATAACATGCACTGGTGTTTTCAACAGGGATGAATACAGAAGTGTTGAACGATTAATCAGATTATATGATAAGCTGCTGCCAATGAAGATGTAATTTCCACTTTTATGTCGAAATCATTTATATGGAAAAAGTAACTATAGTTTCAGTGAAAAGATGGCAATGTTTACTTGATCCCGTCTTTTGGTTTTCGAATGAATAGTTGCTCATTTTCTTTGCAGAATTCACTATAGTTTGGGATCCATGTGTAAAATAAAGTCAagtctttttctgtttt

Function

symbol description
crtac1b Predicted to enable calcium ion binding activity. Predicted to be involved in axonal fasciculation. Orthologous to human CRTAC1 (cartilage acidic protein 1).
crtac1 Predicted to enable calcium ion binding activity. Predicted to be involved in axonal fasciculation. Predicted to act upstream of or within negative regulation of receptor binding activity and olfactory bulb development. Located in extracellular exosome.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254712.1 True 4608 mRNA 0.43 15 15609866 15632570

Neighbor

gene id symbol gene type direction distance location
sfrp5 sfrp5,LOC107747303,LOC107665568,LOC107728441,LOC107601040,LOC107564685 coding downstream 48309 15546586 ~ 15561557 (-)
zgc:171482 zgc:171482,LOC107747266,LOC107665614,LOC107702738,LOC107564682,LOC107728442,LOC108262817 coding downstream 102154 15443065 ~ 15507712 (-)
slc35f3b slc35f3,LOC107747268,LOC107665565,LOC107664233,LOC107736862 coding downstream 239516 15319657 ~ 15370350 (-)
eys si:ch211-69e5.1,LOC107553185,LOC107736852,LOC107664247,LOC107747288,LOC107683858 coding downstream 822762 14630594 ~ 14787104 (-)
LOC122356920 NA coding downstream 990867 14616799 ~ 14618999 (-)
loxl4 loxl4,LOC107665580,LOC107601038,LOC107702733,LOC107719235,LOC107586088 coding upstream 21895 15654465 ~ 15681394 (-)
pyroxd2 pyroxd2,LOC107747264,LOC107601051,LOC107665597,LOC107586065,LOC107702741,LOC107719216 coding upstream 68857 15701427 ~ 15710148 (-)
nkx3.3 nkx3.3,LOC107747300,LOC107665572,LOC107586090,LOC107579953 coding upstream 111347 15743917 ~ 15748460 (-)
st3gal7 st3gal7,LOC107665608,LOC107601047,LOC107747259 coding upstream 239505 15872075 ~ 15876837 (-)
morn4 morn4,LOC107719210,LOC107702749,LOC107747296 coding upstream 257403 15889973 ~ 15893677 (-)
G94132 NA non-coding downstream 4153 15604687 ~ 15605713 (-)
G94063 NA non-coding downstream 325811 15279407 ~ 15284055 (-)
G94016 NA non-coding downstream 614166 14980996 ~ 14995700 (-)
G94003 NA non-coding downstream 736852 14872432 ~ 14873014 (-)
G93905 NA non-coding downstream 1419962 14187539 ~ 14189904 (-)
G94145 NA non-coding upstream 7705 15640275 ~ 15640633 (-)
G94199 NA non-coding upstream 129981 15762551 ~ 15762843 (-)
G94200 NA non-coding upstream 130854 15763424 ~ 15763745 (-)
G94232 NA non-coding upstream 274700 15907270 ~ 15907491 (-)
G94247 NA non-coding upstream 334444 15967014 ~ 15967343 (-)
G94128 NA other downstream 25949 15564617 ~ 15583917 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other downstream 356509 15227332 ~ 15253357 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other downstream 510633 15024832 ~ 15099233 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 1445452 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 1527076 14079532 ~ 14082790 (-)
G94147 NA other upstream 9461 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 53700 15686270 ~ 15720816 (-)
nkx2.3 nkx2.3,LOC107747299,LOC107665571,LOC107702735,LOC107601037,LOC107586108,LOC107719236 other upstream 120066 15752636 ~ 15755128 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other upstream 142207 15774777 ~ 15793540 (-)
G94216 NA other upstream 244957 15877527 ~ 15885222 (-)

Expression


Co-expression Network