LOC122356218 (vip,LOC107655780,LOC107585469,LOC107597641,LOC107679148)


Basic Information

Item Value
gene id LOC122356218
gene name vip,LOC107655780,LOC107585469,LOC107597641,LOC107679148
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18830268 ~ 18832948 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254727.1
TTCAGACATATAAAACGAGGCGAGGGGTGAGACTATTCAAAGAGACGCAAGACCGCGCAAaggaacttaaaaaaaaacaaaccaagcaCCTGGTCACTTTGGGAGGTTTGACTGGAGGTGTTTCAGGACCCCGATCAGCGCGCGGATCACATCTCTATAGCACATGTGTAAAGCAATGCTCGTGAGGAACGGCTCTCAGCTTTTGCTCTTCATAACTCTCTCCAGTGTTTTATACGCCCGGACCTTAAGTTTACCCTTCGCCTCAATGAGaGATACCAGACACGCAGACGGGCTCTTCACAAGCGGATACAGTAAACTTCTAGGACAGTTATCTGCCAGACGGTACCTGGAGTCATTGATCGGAAAGCGGGTCAGCGATGATCTGATGGAAGACCAGGCGCCGATGAAGCGTCATTCAGACGCAATATTCACAGACAACTACAGCCGCTTTCGCAAGCAGATGGCGGTGAAGAAATATCTCAACTCGGTTCTCACAGGAAAGAGAAGTCAAGAAGACCCTCCCAGCATGCAGGAGGAGTCGGCCGGAGGGGAGACCACGTATCGGGAGAGCTACGATGACGTCACCGTAGACCGACTTCTCAATCATATACCACTGCCCCTCTGAGGTCGGCCCGGAAGGCAAGAAATCTACTCTCCGAGACCATCATAGGTTTTCCATTTACACCGTCTAGTATAGGACATCAGCAGCATACtactaaaaacaagaaaaatgtggTTACCTATGGCGTAAATGTTTGCACTGTACATAGAAAATAAACTTGGATGAGAGATGTCAGCCTGAAGATGTACATAGTGTGCTTTGGCCTCGGAAACCCGGTTTGCTTTGACATGTTTCCTGTAAATTGTAgatcaataaatgcattgaaacaAGC

Function

symbol description
vip Enables hormone activity. Acts upstream of or within adenylate cyclase-modulating G protein-coupled receptor signaling pathway and phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be active in neuron projection and perikaryon. Is expressed in several structures, including brain; eye; gut; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in pulmonary sarcoidosis. Orthologous to human VIP (vasoactive intestinal peptide).

NR:

description
histidine-isoleucine/vasoactive intestinal polypeptide

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05264 VIP; vasoactive intestinal peptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254727.1 True 893 mRNA 0.48 6 18830268 18832948

Neighbor

gene id symbol gene type direction distance location
slc29a1a slc29a1a,LOC107655740,LOC107733356 coding downstream 20688 18780375 ~ 18809580 (-)
LOC122356860 NA coding downstream 50029 18777668 ~ 18780239 (-)
LOC122356886 ate1,LOC107724575,LOC107679187,LOC107655512,LOC107597680 coding downstream 86726 18706349 ~ 18743542 (-)
LOC122356087 ate1,LOC107655512 coding downstream 245152 18574784 ~ 18585116 (-)
fgfr2 fgfr2,LOC107724577 coding downstream 325991 18458198 ~ 18504277 (-)
LOC122356839 acoxl coding upstream 142883 18975831 ~ 19008866 (-)
LOC122357016 fbln7,LOC107679196,LOC107754577,LOC107585467,LOC107733340,LOC107688955,LOC107597673 coding upstream 389108 19222056 ~ 19244847 (-)
zmp:0000001138 LOC107733342,LOC107679128,LOC107754581,LOC107597635,LOC107585445 coding upstream 412656 19245604 ~ 19247578 (-)
LOC122357009 NA coding upstream 425438 19258386 ~ 19266509 (-)
golga4 golga4,LOC107724992,LOC107688375,LOC107733336,LOC107679131 coding upstream 530624 19363572 ~ 19399890 (-)
G94849 NA non-coding downstream 202956 18623483 ~ 18627312 (-)
G94845 NA non-coding downstream 286284 18543652 ~ 18543984 (-)
G94843 NA non-coding downstream 289568 18540385 ~ 18540700 (-)
LOC122356994 NA non-coding downstream 374142 18452872 ~ 18456126 (-)
G94826 marcksl1a,LOC107597644,LOC107724621,LOC107679202,LOC107734268,LOC107655702,LOC107585455 non-coding downstream 458917 18218993 ~ 18371351 (-)
G94941 NA non-coding upstream 83297 18916245 ~ 18916650 (-)
G94961 NA non-coding upstream 245612 19078560 ~ 19078839 (-)
G94978 NA non-coding upstream 336920 19169868 ~ 19170089 (-)
G94997 mertk,LOC107724611 non-coding upstream 368895 19201843 ~ 19208269 (-)
G95068 NA non-coding upstream 592615 19425563 ~ 19427926 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other downstream 157375 18545571 ~ 18672893 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 1443262 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 2403733 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 2537889 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 2661064 16009687 ~ 16169204 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 124755 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 453082 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 1029582 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 1076247 19909195 ~ 19921669 (-)
LOC122356211 gng4 other upstream 1431778 20264726 ~ 20275386 (-)

Expression


Co-expression Network