LOC122356263 (ypel5,slc30a10,slc30a1b,LOC107568027,LOC107672346,LOC107601641)


Basic Information

Item Value
gene id LOC122356263
gene name ypel5,slc30a10,slc30a1b,LOC107568027,LOC107672346,LOC107601641
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 22485289 ~ 22489323 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254794.1
TGATGATTAATTTTTCTGGTCCGTCGCGCAACTGTCAAGTCGTGAGTTGCCAATAGCAACAGCTCTTGCGCgtttattttcaactttaacGACATTTAAAACGAAATGTGAATTATTCCAAGCGCTAAAAGAAACCGGTTACACTTAGTTTTGTTTCGCCGTTGAAGACAAACATGGGTTTGGGACAGAACCGGGCGCGTTTGCTGTGCATGCTGTCCTTAACGCTCGTGTTTTTCGTCGTTGAAGTTGTGGTGAGCAGGATAACTGCGTCCCTCGCGATGCTGTCCGACTCTTTTCACATGCTGTCGGACGTGATCGCGCTGATAGTGGCTTTAATCGCGGTGGGCTTCGCGGAGACGGCTCGCGTTACAAGTAAAAACACGTACGGGTGGATCCGAGCAGAAGTGATGGGAGCGCTGGTTAACGCCGTGTTTCTGACGGCCCTCTGCTTCACCATCGCGCTGGAGGCGGTCGAGCGCTACACGCTGCCGCACGAGATCGAGAATCCGCGCGTGGTCATCTGGGTCGGCGTCGCCGGTCTCCTCGTGAACGTCCTCGGTCTTTTCCTGTTCCACGGGCACGCGGGGTTCGGCGGGCACGGGCACTCTCATGGGGGTCACTCTCATGCGGGTCACTCTCATGGGGGTCACTCTCACTCCGGACACCCTCACCTCCACAAGACAACCCGCAGGGAGTATGAAAAACCAAAAGCACACGAAGAAGCCTACAATCTCATGATAAACAGCAACAGCTCTCAAGGAGATCGAGCCTCTGATCTAAAACCAGGCAGCCTGAACATCAAAATCACCGCTAAGGGCTCGTTGGAGGACCTGGACCACAGCCCCGAGTCGGCCTCCCAGATGAACATGCGCGGGGTGTTCCTGCACGTGCTCGGTGACGCCTTAGGCTCCGTCATTGTGGTGGTCAACGCCTTGATCTTCACTTTCGTGTGGACACCGTGCCAGAGCGACGCAGTCTGTTTCAACCCCTGcatgtctctctctctctctctctctctctcaagggcatgtctctctctctctgtgttaacagcatgtctctctctctctctctctctccacacaggTGTACTGCTTCATGTTCTGAACGACGCGCTGGGCtcggtggtggtggtggtggccTCGGCTCTGTTCTACGTGTGGCCCCTGGCCCCTGAGAGCCCGTGTAACTGGCAGTGTTACGTGGACCCCAGTCTGACGCTGGTCATGGTGGCCATCATCATGTCGTCAGCCGCTCCTCTGGTCAAAGAAACGACGGGGATCCTGCTGCAGATGAGTCCTCCGGACCTGCAGCTCAGCTCTGTCTtggaGAGTGTGTGTAAGCTCCCGGGCGTGGCGAGCGTTCACGAGGCTCACGTCTGGGAGTTATCTAAAGGACGAAACGTGGCCTCGCTGCACGTGAAGGTGAGCGCTGACCTGCAGGATTCGACCCTTCAGACTCAGATCCAGCAGCTGTTCCAGCGCGCCGGGGTCCACAGCGTCACGGTTCAGCTGGAGCGAGCCGACGTAGAGATGTCCTGCTGTCCTCCGGCCTCCAGAGACGTGACCGTCGACATGCTGCCCGAGAAAGAGAAGCAGATATCAGctaaacacacagagagcacCAAGTTCTGAAGGACTGgaacacagaacaaacagacCTGGTTTTATTCCTCCTCACGACTGTGCCTCGCTGCCCTTTAAGACTCCAGCTAATGATTCCTAGTAATTGCACTCGGTTAGTTTGAGACGCGAGTTTGACGGGACCCAGATCAACAGTCGAATTATTCAGCAGCTTATTTATTGCTCTGAAAGAGAGACATGTCCAGCTCATATTTCAGCccaaaataacagaataaaaaaacacacaaatcaagCCAAAGTCTCACGAGTGTGTAAAGAATGTAAACATGAAGATAGTATTTGCTGTAGTGCCTTTAATGCTTACGCTGATGTATGTAATAAATAGTAATCTATTACagtaatatgcaaaatattttttaaattagttccttttgattttggggtgaaatttAACCTGGACATAGTTTCAAGAGATTTGTTCTGATAGCGTGTTTGCATTCCTTGCTGTTATTTATGACATTTTGCTCTTAATGATCTTTATAACTTGCTAATTCAGGGAAATATGAttagttgttgttgtgtgtgagtgtgtgtgtgtgtgtgtgtgtttgaaagacAATCAAATGTACTTCAAAACTGTATACACTTATATTAAACATTCTGGTTGAAATCAAA

Function

symbol description
slc30a10 Predicted to enable zinc ion transmembrane transporter activity. Acts upstream of or within manganese ion homeostasis and manganese ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; liver; and yolk syncytial layer. Human ortholog(s) of this gene implicated in hypermanganesemia with dystonia 1. Orthologous to human SLC30A10 (solute carrier family 30 member 10).
ypel5 Predicted to enable metal ion binding activity. Predicted to be part of ubiquitin ligase complex. Orthologous to human YPEL5 (yippee like 5).
slc30a1b Predicted to enable calcium channel inhibitor activity and zinc ion transmembrane transporter activity. Predicted to be involved in cellular zinc ion homeostasis; detoxification of zinc ion; and zinc ion transmembrane transport. Predicted to act upstream of or within transmembrane transport and zinc ion transport. Predicted to be located in membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Predicted to be integral component of membrane. Orthologous to human SLC30A1 (solute carrier family 30 member 1).

NR:

description
PREDICTED: protein yippee-like 5

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254794.1 True 2258 mRNA 0.51 4 22485289 22489323

Neighbor

gene id symbol gene type direction distance location
slc30a10 slc30a10,ypel5,LOC107672346,LOC107601641,LOC107568027,LOC107683860,LOC107568031 coding downstream 161780 22317240 ~ 22323509 (-)
zmp:0000000755 LOC107672344,LOC107742077,LOC103371009 coding downstream 201643 22254179 ~ 22283646 (-)
ptk7b LOC107672339,LOC107577581,LOC107742082 coding downstream 258285 22185040 ~ 22227004 (-)
srfb LOC107689574,LOC107570739 coding downstream 302115 22157665 ~ 22183174 (-)
pwwp2b pwwp2b,LOC107670800,LOC107754010,LOC107744923,LOC107653191 coding downstream 433603 22041455 ~ 22051686 (-)
LOC122356266 LOC107671403,LOC107756883,LOC107688264,LOC107592480,LOC107592170 coding upstream 313395 22802718 ~ 22819457 (-)
c1d c1d,LOC107551342,LOC107754748,LOC107717833,LOC107702672,LOC107660245 coding upstream 645495 23134818 ~ 23136642 (-)
LOC122356317 psap,LOC107575616 coding upstream 667779 23157102 ~ 23167091 (-)
mrps6 LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615 coding upstream 678550 23167873 ~ 23168903 (-)
micu1 micu1,LOC107702683,LOC107754762,LOC107717828,LOC107660220 coding upstream 694592 23183915 ~ 23238517 (-)
G95949 lclat1,LOC107568033,LOC107742083,LOC107601640 non-coding downstream 2070 22313656 ~ 22483219 (-)
G95937 lbh non-coding downstream 13949 22465146 ~ 22471340 (-)
G95971 NA non-coding downstream 61069 22423119 ~ 22424220 (-)
G95938 LOC107711401,LOC107568028,LOC107683865 non-coding downstream 114664 22248056 ~ 22370625 (-)
G95941 NA non-coding downstream 181508 22303305 ~ 22303781 (-)
G95984 NA non-coding upstream 31693 22521016 ~ 22521948 (-)
G95985 NA non-coding upstream 32632 22521955 ~ 22523449 (-)
G95990 NA non-coding upstream 131719 22621042 ~ 22621428 (-)
G95992 NA non-coding upstream 144943 22634266 ~ 22634490 (-)
G95995 NA non-coding upstream 168347 22657670 ~ 22657904 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 37278 22371567 ~ 22448011 (-)
G95972 NA other downstream 62420 22420936 ~ 22422869 (-)
ypel5 ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471 other downstream 155997 22326705 ~ 22329292 (-)
G95936 lbh other downstream 188062 22296341 ~ 22297227 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other downstream 234976 22231449 ~ 22250313 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other upstream 332658 22821981 ~ 22823259 (-)
G96053 NA other upstream 504714 22994037 ~ 22995599 (-)
si:ch211-130h14.4 LOC107660236 other upstream 940323 23429646 ~ 23444063 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 1853426 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 1909800 24399123 ~ 24404715 (-)

Expression


Co-expression Network