fndc5a (fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678)


Basic Information

Item Value
gene id fndc5a
gene name fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18073731 ~ 18080606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254799.1
gagagagagagagagagagagagagagagagagagagagagagagagagagagatgccaCAGGCTCACCGCACACTCCttcagtcagttttttttagcttcttagTGTTGCAGGTATGAAGACAGCCGTATGAAGAACCGCACAGACAAAAGGGGCTCGTTTCAGTGTCTCCGCTGTGCAGAGCGATGCGGGCGTGGAGCTGTCCCCGGTGCTGAACCGCCGCTGTCCGCGGTGCTGAAACACGGCGCTCCGGTCCCACAGCGACGTTCATCGACGTGAATGCTAGACCAGCGGAGGACATTCACATCAAGCCTGCGTGGAAAGGATGAGGAGGGTTTTCATGTCCACATCGCTGCTCATATTGAGCTGTTTCGGAGCGTCGTGGGTCTTGGCTGACAGTTTGGCTGCTCCGGTGAACGTGTCCATCAGAGATCTAAAGGGCAGCTCTGCTGTGGTGACATGGGACATCCCAGACGGGGAGCCAGTCATCGGCTTTGCCATCACGCAACAGAAAAAAGACGTTCGCATGCTGCGCTTCATCCAGGAAGTGAACACTACCACACGGAGCTGTGCATTGTGGGATCTGGAGGCAGATACGGACTACATAGTGCATGTCCAGTCCATCAGCGTAAGCGGGCCGAGTCCCCTCAGCGAACCTCTGCAGTTCAAAACCCCCAAAGAAGCCGAAACGCAGGCCTCTAAGAGCAAAGACGAAGTGACCATGGAAGAAGTGGGTCAGAACGCTCAGCTCCGGGCCGGGGAGATCATCATCATCGTGGTGGTTCTGATCATGTGGGCCGGTGTGATCGCTCTCTTCTGCCGTCAGTACGACATCATCAAAGACAACGAGCCCAACAATAACAAGGACAAAGCCAAGAACTCGTCCGAGTGCAGCACCCCGGAGCATCCGTCGGGAGGTCTGCTGCGCAGTAAGTTCTCagagaacaacaacaataaccGAACACCATCTGTGAACATTATCAATGCGTGACAGGATGGTTTCCGCCTCGCTGGATTCTGCTTTTTACCGCACGGATACGGAGCGGCCGCATGCGCTCATCCTCCAAACGGGAAGCAGGAATGCTGGAAGTTCCCTGAGAACAGCCGGAATAATCCTGCACCTGAAAGAGAAGCCAGAAAGATGATGTTTCGCACAGCTCTGGCTCCAGCGGTATGGAGACAAAACCGAATCTGTGGCTGTAAGCggcaggagaaagaaagaaataccgggggggaaaaaagaccCTTCTCACTTCTCCATCACTTTTCAGACAACTGGCGTCTGCAAGGAGATCTAAAACTCTCTCTTTTAACCTCGAAAACTCCCGTTTCTCTTTTACCCTTTTCAAACGGCATGATCCACATTCTTCTCAACGGCGGCGAAAGCTTTTATAACAAACCTGTAGCAAGCCACTACACGCAGGACAAACATTTCTAGCGGTCAAAAAAATTGCTCATTCCTATGTCGCGAAAAACAGTACGTCCGAACATTTAAATCAGCTTGGGTATGCAAGCATTAAGGGGACGTTCCTTTTTAGAATTTTGAGAACGCAGGAACGTTATTTTCGAATGTTCTCCGTTCTCTTGGATTTCAAATGTCTGAAACAACATTCGAAATCCGGGATTTAAAACACCAGTTAAAACACGAGGTTTGAGGGTTTTAAACAAAGGAAAGCTGTAAAGTAAATTCCCGCCCAATCCCTGCACGAATGAGACATTATTCGTGCGATTATGAAGCACACGGGGTCAGATCAGTTCCACTGAAGCTCAAGATCAGTGTTGCTTTTGTTAAGCAGAACTAAACTgttaaaagctgcatttaacGAAATAaagctggaataaaaaaaaaactta
>XM_043254800.1
gagagagagagagagagagagagagagagagagagagagagagagagagagagatgccaCAGGCTCACCGCACACTCCttcagtcagttttttttagcttcttagTGTTGCAGGTATGAAGACAGCCGTATGAAGAACCGCACAGACAAAAGGGGCTCGTTTCAGTGTCTCCGCTGTGCAGAGCGATGCGGGCGTGGAGCTGTCCCCGGTGCTGAACCGCCGCTGTCCGCGGTGCTGAAACACGGCGCTCCGGTCCCACAGCGACGTTCATCGACGTGAATGCTAGACCAGCGGAGGACATTCACATCAAGCCTGCGTGGAAAGGATGAGGAGGGTTTTCATGTCCACATCGCTGCTCATATTGAGCTGTTTCGGAGCGTCGTGGGTCTTGGCTGACAGTTTGGCTGCTCCGGTGAACGTGTCCATCAGAGATCTAAAGGGCAGCTCTGCTGTGGTGACATGGGACATCCCAGACGGGGAGCCAGTCATCGGCTTTGCCATCACGCAACAGAAAAAAGACGTTCGCATGCTGCGCTTCATCCAGGAAGTGAACACTACCACACGGAGCTGTGCATTGTGGGATCTGGAGGCAGATACGGACTACATAGTGCATGTCCAGTCCATCAGCGTAAGCGGGCCGAGTCCCCTCAGCGAACCTCTGCAGTTCAAAACCCCCAAAGAAGCCGAAACGCAGGCCTCTAAGAGCAAAGACGAAGTGACCATGGAAGAAGTGGGTCAGAACGCTCAGCTCCGGGCCGGGGAGATCATCATCATCGTGGTGGTTCTGATCATGTGGGCCGGTGTGATCGCTCTCTTCTGCCGTCAGTACGACATCATCAAAGACAACGAGCCCAACAATAACAAGGACAAAGCCAAGAACTCGTCCGAGTGCAGCACCCCGGAGCATCCGTCGGGAGGTCTGCTGCGCAGTAAGGTATAAGCGCTGCCCTGGGGGACAGACCACACTAGGCAGTTCTCagagaacaacaacaataaccGAACACCATCTGTGAACATTATCAATGCGTGACAGGATGGTTTCCGCCTCGCTGGATTCTGCTTTTTACCGCACGGATACGGAGCGGCCGCATGCGCTCATCCTCCAAACGGGAAGCAGGAATGCTGGAAGTTCCCTGAGAACAGCCGGAATAATCCTGCACCTGAAAGAGAAGCCAGAAAGATGATGTTTCGCACAGCTCTGGCTCCAGCGGTATGGAGACAAAACCGAATCTGTGGCTGTAAGCggcaggagaaagaaagaaataccgggggggaaaaaagaccCTTCTCACTTCTCCATCACTTTTCAGACAACTGGCGTCTGCAAGGAGATCTAAAACTCTCTCTTTTAACCTCGAAAACTCCCGTTTCTCTTTTACCCTTTTCAAACGGCATGATCCACATTCTTCTCAACGGCGGCGAAAGCTTTTATAACAAACCTGTAGCAAGCCACTACACGCAGGACAAACATTTCTAGCGGTCAAAAAAATTGCTCATTCCTATGTCGCGAAAAACAGTACGTCCGAACATTTAAATCAGCTTGGGTATGCAAGCATTAAGGGGACGTTCCTTTTTAGAATTTTGAGAACGCAGGAACGTTATTTTCGAATGTTCTCCGTTCTCTTGGATTTCAAATGTCTGAAACAACATTCGAAATCCGGGATTTAAAACACCAGTTAAAACACGAGGTTTGAGGGTTTTAAACAAAGGAAAGCTGTAAAGTAAATTCCCGCCCAATCCCTGCACGAATGAGACATTATTCGTGCGATTATGAAGCACACGGGGTCAGATCAGTTCCACTGAAGCTCAAGATCAGTGTTGCTTTTGTTAAGCAGAACTAAACTgttaaaagctgcatttaacGAAATAaagctggaataaaaaaaaaactta
>XM_043254801.1
gagagagagagagagagagagagagagagagagagagagagagagagagagagatgccaCAGGCTCACCGCACACTCCttcagtcagttttttttagcttcttagTGTTGCAGGTATGAAGACAGCCGTATGAAGAACCGCACAGACAAAAGGGGCTCGTTTCAGTGTCTCCGCTGTGCAGAGCGATGCGGGCGTGGAGCTGTCCCCGGTGCTGAACCGCCGCTGTCCGCGGTGCTGAAACACGGCGCTCCGGTCCCACAGCGACGTTCATCGACGTGAATGCTAGACCAGCGGAGGACATTCACATCAAGCCTGCGTGGAAAGGATGAGGAGGGTTTTCATGTCCACATCGCTGCTCATATTGAGCTGTTTCGGAGCGTCGTGGGTCTTGGCTGACAGTTTGGCTGCTCCGGTGAACGTGTCCATCAGAGATCTAAAGGGCAGCTCTGCTGTGGTGACATGGGACATCCCAGACGGGGAGCCAGTCATCGGCTTTGCCATCACGCAACAGAAAAAAGACGTTCGCATGCTGCGCTTCATCCAGGAAGTGAACACTACCACACGGAGCTGTGCATTGTGGGATCTGGAGGCAGATACGGACTACATAGTGCATGTCCAGTCCATCAGCGTAAGCGGGCCGAGTCCCCTCAGCGAACCTCTGCAGTTCAAAACCCCCAAAGAAGCCGAAACGCAGGCCTCTAAGAGCAAAGACGAAGTGACCATGGAAGAAGTGGGTCAGAACGCTCAGCTCCGGGCCGGGGAGATCATCATCATCGTGGTGGTTCTGATCATGTGGGCCGGTGTGATCGCTCTCTTCTGCCGTCAGTACGACATCATCAAAGACAACGAGCCCAACAATAACAAGGACAAAGCCAAGAACTCGTCCGAGTGCAGCACCCCGGAGCATCCGTCGGGAGGTCTGCTGCGCAGTAAGGTATAAGCGCTGCCCTGGGGGACAGACCACACTAGTTCTCagagaacaacaacaataaccGAACACCATCTGTGAACATTATCAATGCGTGACAGGATGGTTTCCGCCTCGCTGGATTCTGCTTTTTACCGCACGGATACGGAGCGGCCGCATGCGCTCATCCTCCAAACGGGAAGCAGGAATGCTGGAAGTTCCCTGAGAACAGCCGGAATAATCCTGCACCTGAAAGAGAAGCCAGAAAGATGATGTTTCGCACAGCTCTGGCTCCAGCGGTATGGAGACAAAACCGAATCTGTGGCTGTAAGCggcaggagaaagaaagaaataccgggggggaaaaaagaccCTTCTCACTTCTCCATCACTTTTCAGACAACTGGCGTCTGCAAGGAGATCTAAAACTCTCTCTTTTAACCTCGAAAACTCCCGTTTCTCTTTTACCCTTTTCAAACGGCATGATCCACATTCTTCTCAACGGCGGCGAAAGCTTTTATAACAAACCTGTAGCAAGCCACTACACGCAGGACAAACATTTCTAGCGGTCAAAAAAATTGCTCATTCCTATGTCGCGAAAAACAGTACGTCCGAACATTTAAATCAGCTTGGGTATGCAAGCATTAAGGGGACGTTCCTTTTTAGAATTTTGAGAACGCAGGAACGTTATTTTCGAATGTTCTCCGTTCTCTTGGATTTCAAATGTCTGAAACAACATTCGAAATCCGGGATTTAAAACACCAGTTAAAACACGAGGTTTGAGGGTTTTAAACAAAGGAAAGCTGTAAAGTAAATTCCCGCCCAATCCCTGCACGAATGAGACATTATTCGTGCGATTATGAAGCACACGGGGTCAGATCAGTTCCACTGAAGCTCAAGATCAGTGTTGCTTTTGTTAAGCAGAACTAAACTgttaaaagctgcatttaacGAAATAaagctggaataaaaaaaaaactta

Function

symbol description
fndc5a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular region and plasma membrane. Orthologous to human FNDC5 (fibronectin type III domain containing 5).
fndc5 Predicted to enable hormone activity. Predicted to be involved in positive regulation of brown fat cell differentiation and response to muscle activity. Predicted to be located in endoplasmic reticulum. Predicted to be active in extracellular region and plasma membrane.

NR:

description
fibronectin type III domain-containing protein 5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254799.1 False 1854 mRNA 0.50 6 18073731 18080606
XM_043254800.1 True 1893 mRNA 0.50 6 18073731 18080606
XM_043254801.1 False 1889 mRNA 0.50 6 18073731 18080606

Neighbor

gene id symbol gene type direction distance location
rhd rhd,LOC107597651,LOC107679155,LOC107724598 coding downstream 93622 17972876 ~ 17980109 (-)
rsrp1 LOC107597652,LOC107679156,LOC107724580 coding downstream 108861 17960037 ~ 17964870 (-)
runx3 runx3,LOC107724626,LOC107734303,LOC107597655,LOC107561777,LOC107667963 coding downstream 220358 17800984 ~ 17853373 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 285600 17776719 ~ 17788131 (-)
khdrbs1a khdrbs1a,LOC107597656,LOC107679143,LOC107724614,LOC107561769,LOC107734287 coding downstream 299880 17769381 ~ 17773851 (-)
LOC122356930 NA coding upstream 293262 18373868 ~ 18380023 (-)
ftr69 LOC107597643,LOC107679211 coding upstream 299429 18380035 ~ 18383710 (-)
fgfr2 fgfr2,LOC107724577 coding upstream 377592 18458198 ~ 18504277 (-)
LOC122356087 ate1,LOC107655512 coding upstream 494178 18574784 ~ 18585116 (-)
LOC122356886 ate1,LOC107724575,LOC107679187,LOC107655512,LOC107597680 coding upstream 625743 18706349 ~ 18743542 (-)
G94663 NA non-coding downstream 79482 17940403 ~ 17994249 (-)
G94672 NA non-coding downstream 102755 17970213 ~ 17970976 (-)
LOC122356279 NA non-coding downstream 163015 17903197 ~ 17910716 (-)
LOC122356989 NA non-coding downstream 173616 17892037 ~ 17900115 (-)
G94619 NA non-coding downstream 281841 17790884 ~ 17791890 (-)
G94709 NA non-coding upstream 26824 18107430 ~ 18107801 (-)
G94711 NA non-coding upstream 27232 18107838 ~ 18108189 (-)
G94713 olig4,LOC107597691,LOC107679159,LOC107735633,LOC107734277,LOC107585473,LOC107655687 non-coding upstream 31084 18111690 ~ 18113621 (-)
G94723 NA non-coding upstream 39197 18119803 ~ 18120616 (-)
G94728 NA non-coding upstream 53839 18134445 ~ 18136614 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 686725 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 1647196 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 1781352 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 1904527 16009687 ~ 16169204 (-)
G94216 NA other downstream 2188509 15877527 ~ 15885222 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 464965 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 877097 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 1205424 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 1781924 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 1828589 19909195 ~ 19921669 (-)

Expression


Co-expression Network