mrps6 (LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615)


Basic Information

Item Value
gene id mrps6
gene name LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23167873 ~ 23168903 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254877.1
TAGATGGAGCGCGACGTCAAACTCCACGTGCGTCTCCGCGGTGTCTCCTTGAAGAAGACTCTCACGCGCACCTCCGTGACAGCTTTACGTCGAGAGTGGTTCGTTTCTCCTAAACCTCGTTCAGCCAGCAGCGGGAGATGCCGCGGTACGAGCTGTGCGTGATCCTGAAGGCGATGCAGAGGCCGGAGACGGCCGCGGCGCTGCGGCGCACGGTGGAGACGCTGCTGGAGCGCGGCGCTGTGGTCAGGGCTCTGGAGAACCTCGGCGATCGCAGACTGCCCTACAAGATCTCCAAACACGACTCTCGGCACACGCACGGCGGATACTTCTCCGTCGACTTCCACTCCTCGCCGGGGATCGTGAGCGAGCTGCTGAATCACCTCGAGCGGGACGTCGACGTGCTGCGACCGACAGTTTTAAAGAAAGACGAGCGGCTCGTCGCAGCGCGGTGCTGTGAAGCTCAAGCTCAGAAAGCGAAGAGGGCCACTTCCAGATAAACGTGAGAATCGGACTGTGTAGAAGGCATCATCTGCTGGATTATGTGAATGGACTGTTGCAACGAGACAAAACGAATAAATGTCAGcatcctttttatatttttgccgGAACGCATTTAACTTAAGCTAATTATGTGATGGGGTTTTTCCACAAAGAACTGTACATATGACCGCTTTGCGGGATCAGCGTTTTTGGAGTATTCAGTGTTAATATGACAGTTTCTGCTTCAGTGAATACGTGCATAAATAAACCACATAAAAATATA
>XM_043254878.1
GTAGATGGAGCGCGACGTCAAACTCCACGTGCGTCTCCGCGGTGTCTCCTTGAAGAAGACTCTCACGCGCACCTCCGTGACAGCTTTACGTCGAGAGTGGTTCGTTTCTCCTAAACCTCGTTCAGCCAGCAGCGGGAGATGCCGCGGTACGAGCTGTGCGTGATCCTGAAGGCGATGCAGAGGCCGGAGACGGCCGCGGCGCTGCGGCGCACGGTGGAGACGCTGCTGGAGCGCGGCGCTGTGGTCAGGGCTCTGGAGAACCTCGGCGATCGCAGACTGCCCTACAAGATCTCCAAACACGACTCTCGGCACACGCACGGCGGATACTTCTCCGTCGACTTCCACTCCTCGCCGGGGATCGTGAGCGAGCTGCTGAATCACCTCGAGCGGGACGTCGACGTGCTGCGACCGACAGTTTTAAAGAAAGACGAGCGGCTCGTCGCAGCGCGGTGCTGTGAAGCTCAAGCTCAGAAAGCGAAGAGGGCCACTTCCAGATAAACGACTGTGTAGAAGGCATCATCTGCTGGATTATGTGAATGGACTGTTGCAACGAGACAAAACGAATAAATGTCAGcatcctttttatatttttgccgGAACGCATTTAACTTAAGCTAATTATGTGATGGGGTTTTTCCACAAAGAACTGTACATATGACCGCTTTGCGGGATCAGCGTTTTTGGAGTATTCAGTGTTAATATGACAGTTTCTGCTTCAGTGAATACGTGCATAAATAAACCACATAAAAATATA

Function

NR:

description
28S ribosomal protein S6, mitochondrial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02990 RP-S6, MRPS6, rpsF; small subunit ribosomal protein S6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254877.1 True 763 mRNA 0.53 2 23167873 23168902
XM_043254878.1 False 754 mRNA 0.53 2 23167873 23168903

Neighbor

gene id symbol gene type direction distance location
LOC122356317 psap,LOC107575616 coding downstream 782 23157102 ~ 23167091 (-)
c1d c1d,LOC107551342,LOC107754748,LOC107717833,LOC107702672,LOC107660245 coding downstream 31231 23134818 ~ 23136642 (-)
LOC122356266 LOC107671403,LOC107756883,LOC107688264,LOC107592480,LOC107592170 coding downstream 348416 22802718 ~ 22819457 (-)
LOC122356263 ypel5,slc30a10,slc30a1b,LOC107568027,LOC107672346,LOC107601641 coding downstream 678550 22485289 ~ 22489323 (-)
slc30a10 slc30a10,ypel5,LOC107672346,LOC107601641,LOC107568027,LOC107683860,LOC107568031 coding downstream 844364 22317240 ~ 22323509 (-)
micu1 micu1,LOC107702683,LOC107754762,LOC107717828,LOC107660220 coding upstream 15012 23183915 ~ 23238517 (-)
pla2g12b pla2g12b,LOC107702679,LOC107551354,LOC107564523,LOC107660215 coding upstream 155879 23324782 ~ 23329933 (-)
pde10a pde10a,LOC107754764,LOC107717825,LOC107564529 coding upstream 163917 23332820 ~ 23416851 (-)
tbxtb tb,t,LOC107717823,LOC107660241,LOC107564521,LOC107702670,LOC107572025,LOC107750753 coding upstream 256129 23425032 ~ 23429064 (-)
prr18 prr18,LOC107750748,LOC107702669,LOC107717824,LOC107660240,LOC107564522 coding upstream 275276 23444179 ~ 23446166 (-)
G96108 NA non-coding downstream 13378 23152205 ~ 23154495 (-)
G96061 NA non-coding downstream 137973 23017198 ~ 23029900 (-)
G96060 NA non-coding downstream 160410 23006279 ~ 23007463 (-)
G96044 NA non-coding downstream 333461 22833829 ~ 22834412 (-)
G95997 NA non-coding downstream 508561 22658667 ~ 22659312 (-)
G96117 NA non-coding upstream 7899 23176802 ~ 23178096 (-)
G96254 myom2,LOC107566060,LOC107660212,LOC107702662,LOC107717844,LOC107572023 non-coding upstream 369875 23538778 ~ 23542300 (-)
G96265 NA non-coding upstream 758428 23927331 ~ 23928060 (-)
G96279 NA non-coding upstream 873625 24042528 ~ 24067735 (-)
G96286 NA non-coding upstream 901257 24070160 ~ 24070488 (-)
G96053 NA other downstream 172274 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 344614 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 719862 22371567 ~ 22448011 (-)
G95972 NA other downstream 745004 22420936 ~ 22422869 (-)
ypel5 ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471 other downstream 838581 22326705 ~ 22329292 (-)
si:ch211-130h14.4 LOC107660236 other upstream 260743 23429646 ~ 23444063 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 1173846 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 1230220 24399123 ~ 24404715 (-)

Expression


Co-expression Network