rhd (rhd,LOC107597651,LOC107679155,LOC107724598)


Basic Information

Item Value
gene id rhd
gene name rhd,LOC107597651,LOC107679155,LOC107724598
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17972876 ~ 17980109 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255013.1
GCTGTAGTCTTGGGGAAGAAACAATCATTCAAGTTGCTGTAGGACAGGATGAACGCTAACAATAATTCttgcattataaaacaatataaaacaaagcCTGTCAAAGATGTTACACAATACCACATATTGATTAATTGCACACGTTGTAGGTGGCATTTTGGGAAACATCTCCATGCCTCTCACATGCACGTGATCTTACATATTCCTCGTCTCTGGTGGGTGTAGATTACAGACATTCAGAGTTTGTCACGTAATAATGGCTCCTCAGTACAGCCCCAGTCTCCGCTCAAGACTTCCTCTCGTGGCCTTCCTACTGGAAACCATCTTTCTCCTactgtttgtcttttttgtgaaaacagagCAGCAGACAGGCAGAGAGTCTGACAGCAAGCTTTTCATCAGCTCATATGCAGAATTCCAAGATGTTCACGTGATGATATTCATGGGGTTTGGGTTCCTAGCCACTTTCCTTGTACGGTATGGTTTCAGCGGGTCGGGGTTTAACGTGCTTTTGGCAGCCATGGCCATTCAGTGGGCCGTCTTGATAAATGGCTTCCTGTTGCCACGACGACACCACGGAAGAGAGATCCACGTCGATATGAAGAGTTTGATCGAGGCAGAGCTCTGTGCAGCATCCGCTCTGGTTGCCATGGGAGCGGTCCACGGGAAGACAAATCCTGTCCAGCTTTTACTGATGGCTTTAGCGGAGGTCACAGGATTTGTGGTCAATCAGTGGATCCTGCAAACTCTGCTCAGTGTAGGTCCAGTGTACAGCGTCATGCTGCTGCACGTCTTCGGAGCTCTGTTCGGTGTGATGGTGTCATGGGTGCTGCACAGAGAGGGGATCAAACCAGTGCACGAGAAAGAGAAAACTGACAGGAAGACTGGCCTATTTGCAATGTTTGGAACGCTGTTTCTGTGGATGTTCTGGCCCAGTTTTAACTCAGCGCTGCTGAGAGATTACCGGTGGCAGGGAGGACTGAAACTTTCTGTCATTTATGGAACGTATCTGTCGCTGGCTGTCGGTGTTGTCATGGCGATGTCTGTCTCTATGCTCACTAGCTCCAAAGGAAAGATGAACATGGTTCACGTCCAGAGCTCTGCTCTGTGCGGCGTGGCCTTTGGAGTTGCAATGACAGCAGTTCACACGCCGTGGATTGCCATGACGATTGGATTCTGTGCCGCTTTATTATCAGCTCTGGGCTTCCGGTACATGAAGAATCACATGCTGTTTGCGTTCGAATGTCACGACACCTGCGGCGTCCTCAGCGTGCATGCCATACCGGGAATTCTGGGATGGTTCGCTCATTTCTTTCTACGGCTGGCCAGTAACGAGGGCAcggtGTTCGCCGTGTATCACATCTGTGTTCTCCTCATAACAGCATCCATGAGTCTGGTGATGGGCACGGCTACAGGGCTTTTTCTTAAATGGAGTATCTGGAGACCCCAGCAGGACAGGAAGTGCTTTGATGACCAGGCATTCTGGGAGTTTCCGAATTTGATGGAACGGAAATGAAGAACCCGCGGACGCATTAACAAGAGGACCCCGACTGAATGAacgcgtttgtgtgtgttttgagaggTTAGATATCGCTTAAGCAAACAATTTACAAGATAAAATGTCCTTGAATGGAAAGCATTGTGCTTCTTAAGagacaaatcatacaaaacatCGCCAAAGAAATTTCCAAGCCCCTGGAAATTGAGGCTGgattaaattactttaatggaagcaagaaaaacagagaagagTTTGTTCAGCCTGACAATGACAAACCGATACACAGCACCTAAACGCAATATGCGAAAACACCCTCATGGTGACTCTAATATGTTTTTCATCAGcttttgaatgtaataaaacattgctctttctaaaagaaaaaaaaaaaaacaccggcTCCGtccatatttacaataattttattcatttaaacccACAGTTGGATGAAGTTCGGCTACTTTTTtgtcagaaagagagacacggattacattaaaatgttacattcttTTTAACAGGTAGAAATCACAGAATCTCTAATTTGTTAGTTGACGAGTCGAGTCGACTCGCATTTCATCTTATTCATCCCATAACCActgaaataataagaaattgtgcttttaaaaacattaacatttttatacaacTCCCATATCGCCCACACATACACAGGAGAGTCGACTTAAAGCTCCCAAAGCTACAAAATATATAACCAGGCTTCCCACAGTCaagaaaaactcaaaagaaataGGCTGTTTGGTTTGACTAGTcgcacagaaatgaaaaatattgacAGCGAATATACGTTTCTAGTTACGCTCGGCTATGAGAAACTGCTTGTGCTCAGTGCAATCGgtgtaaagtttaaaaattaaacaactgaATGGCTGCGTAAAGCATGGGAAACCACATAAAgcgatatataaaaaaaaaaatcttacaaaagTAAGACGTAGAATAAAGAGCTTGTTGTGATATCAGCTGGCTGAAAGTTGAGCCGTGTTCTCGACTGCACGGAAATGAAAGTTTACCGAAAGATACAATTTCGGTGGCTTATTCAAAAAAGAagagacttttatttaaatgatttaaaaaaaaaaaaaaaaaaagacacagtgaaGCTGAAAAGACTGAAAGCCAGTCACACTCATTTTGGTTATTGATTATGCTCAAAAACTCGcgtaacaatattttt

Function

symbol description
rhd Predicted to enable ammonium transmembrane transporter activity. Predicted to be involved in ammonium transmembrane transport. Predicted to act upstream of or within ammonium transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in blood. Orthologous to several human genes including RHD (Rh blood group D antigen).

NR:

description
Rh30-like3

GO:

id name namespace
GO:0015696 ammonium transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255013.1 True 2696 mRNA 0.43 11 17972876 17980109

Neighbor

gene id symbol gene type direction distance location
rsrp1 LOC107597652,LOC107679156,LOC107724580 coding downstream 8006 17960037 ~ 17964870 (-)
runx3 runx3,LOC107724626,LOC107734303,LOC107597655,LOC107561777,LOC107667963 coding downstream 119503 17800984 ~ 17853373 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 184745 17776719 ~ 17788131 (-)
khdrbs1a khdrbs1a,LOC107597656,LOC107679143,LOC107724614,LOC107561769,LOC107734287 coding downstream 199025 17769381 ~ 17773851 (-)
LOC122356377 NA coding downstream 207616 17752801 ~ 17765260 (-)
fndc5a fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678 coding upstream 93622 18073731 ~ 18080606 (-)
LOC122356930 NA coding upstream 393759 18373868 ~ 18380023 (-)
ftr69 LOC107597643,LOC107679211 coding upstream 399926 18380035 ~ 18383710 (-)
fgfr2 fgfr2,LOC107724577 coding upstream 478089 18458198 ~ 18504277 (-)
LOC122356087 ate1,LOC107655512 coding upstream 594675 18574784 ~ 18585116 (-)
G94672 NA non-coding downstream 1900 17970213 ~ 17970976 (-)
LOC122356279 NA non-coding downstream 62160 17903197 ~ 17910716 (-)
LOC122356989 NA non-coding downstream 72761 17892037 ~ 17900115 (-)
G94619 NA non-coding downstream 180986 17790884 ~ 17791890 (-)
G94608 NA non-coding downstream 250576 17721728 ~ 17722300 (-)
G94709 NA non-coding upstream 127321 18107430 ~ 18107801 (-)
G94711 NA non-coding upstream 127729 18107838 ~ 18108189 (-)
G94713 olig4,LOC107597691,LOC107679159,LOC107735633,LOC107734277,LOC107585473,LOC107655687 non-coding upstream 131581 18111690 ~ 18113621 (-)
G94723 NA non-coding upstream 139694 18119803 ~ 18120616 (-)
G94728 NA non-coding upstream 154336 18134445 ~ 18136614 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 585870 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 1546341 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 1680497 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 1803672 16009687 ~ 16169204 (-)
G94216 NA other downstream 2087654 15877527 ~ 15885222 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 565462 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 977594 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 1305921 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 1882421 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 1929086 19909195 ~ 19921669 (-)

Expression


Co-expression Network