rsrp1 (LOC107597652,LOC107679156,LOC107724580)


Basic Information

Item Value
gene id rsrp1
gene name LOC107597652,LOC107679156,LOC107724580
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17960037 ~ 17964870 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255014.1
TTGAGTTTCGGttaagaagaaaaacaagccGCGCGCGAGACGCTTCACGCTCGCGAGAAAACTACGGTGTTTGCTACAGATAGCCGCTGACTACTCGGAATCGCGTTTTTCGTTTCAAGCATTCGGACGTGTTTTTGCAATAAACGCACGTTTATTTCACAGCTGTTGAGTTTCGAAACGTTTCTGTTTTGAACTCGCTCGAGGAGGGTCGAGCGATACAGAGGTTTGTTCGAAATCGCTCATCTTACTGTTGTATCAAGTCTCTTTTGACGGTTTGATCATGAAGGAGGCCAACCCTGGGCATCGCAGTGAGGGCATGAGGCTCATCTTTGATCAGAAGGCTCCATCCGGTCGCAGCTCCTCTcgctccagcagcagcagcagcgacAGCTCGTACTCCAGCAGCAGGGGGAGCCGCTTTTCCCGCAGGTCACGGAGCGTTTCACGGAGCTCATCTTCTGACAGCGGCTCTTCCTCACCCGCACGCTCTCGCTCACGTTCCCGCTCTCATCCACGCTGCTCGGGCCGCTTACACTGCCGTCACAGACGCGATTCTCCTCCTCGCCGTTACCGGGCTCGCTCTCGCTCTTACAGCCCTTCTCCTGAGCGTTCCTCCCACCGCAGACGCTACCATCGTCGCAGTCGCTCTCCATCGCCCTATAGCTACTCCAGGCGTTACAGGCGTTCTCCGTCGCGGCCTCGCTCTCGCAGTCGTTCCCCGGTTTGCTGGAGGGGAAGCAGGTTCGTGGGGAGGTACAGGTGCCGTTTCTCCCGCTCACCCAGGTCCTCCACAGATTACAGAAGCCGGTCTCGCAGCCGTGAACGCTCTGCAGTCTGCCTCAGCCTTGAGGAGAAGAAGTATCTGTTAAATGTGGCCAAAGCAAATGCCACCAGGATTCTGGGAGTGCAGAACTTAGAGCTGCCAGCTAGCCTGAAGGacctggaggaggaggaggaggagaggagatcTTCATCAGATAAAGAGGAAAGGGTGAGCGCTGACCGGGCATCACAGAAGACACCAGCACAGgGAAACATTGCCAATGATGATGGTGAGGCAGAGGCTTCTTCGACATCTCCCAAGAGAAAGTCAATTGCCTTCAGCATTAATAATACCATTGCCAGACCTTCGAACAGCCCAATGCTCCATGACAGTAAGGTAACATCAAGAGCTGACAGCGTAGCAGACAGGAAACCATATGGACAGTGGGTCCCCATCAGCAGATCATCGTCTAAGAAATAAACACTTGAGATTCAGCAGTGATGTAAAAAAGAGTGTATATAGTGTAAATAGTTTGTAGCGATCACTTGGCGTGGGGCGGGCGGCTGGCTGGCTAGGGACGCTTGAATTcatcataaatgttttctttcagatGTAAAGTGTGTTTTGTGGAAGAAGGCAAGAGGATGTCAAACAGGTGGGAAATACTGTGTACGTTGTGGTGTTGTAcagtgtttcaaataaaaatgcaaaaaagaaaa
>XM_043255015.1
TTGAGTTTCGGttaagaagaaaaacaagccGCGCGCGAGACGCTTCACGCTCGCGAGAAAACTACGGTGTTTGCTACAGATAGCCGCTGACTACTCGGAATCGCGTTTTTCGTTTCAAGCATTCGGACGTGTTTTTGCAATAAACGCACGTTTATTTCACAGCTGTTGAGTTTCGAAACGTTTCTGTTTTGAACTCGCTCGAGGAGGGTCGAGCGATACAGAGGTTTGTTCGAAATCGCTCATCTTACTGTTGTATCAAGTCTCTTTTGACGGTTTGATCATGAAGGAGGCCAACCCTGGGCATCGCAGTGAGGGCATGAGGCTCATCTTTGATCAGAAGGCTCCATCCGGTCGCAGCTCCTCTcgctccagcagcagcagcagcgacAGCTCGTACTCCAGCAGCAGGGGGAGCCGCTTTTCCCGCAGGTCACGGAGCGTTTCACGGAGCTCATCTTCTGACAGCGGCTCTTCCTCACCCGCACGCTCTCGCTCACGTTCCCGCTCTCATCCACGCTGCTCGGGCCGCTTACACTGCCGTCACAGACGCGATTCTCCTCCTCGCCGTTACCGGGCTCGCTCTCGCTCTTACAGCCCTTCTCCTGAGCGTTCCTCCCACCGCAGACGCTACCATCGTCGCAGTCGCTCTCCATCGCCCTATAGCTACTCCAGGCGTTACAGGCGTTCTCCGTCGCGGCCTCGCTCTCGCAGTCGTTCCCCGGTTTGCTGGAGGGGAAGCAGGTTCGTGGGGAGGTACAGGTGCCGTTTCTCCCGCTCACCCAGGTCCTCCACAGATTACAGAAGCCGGTCTCGCAGCCGTGAACGCTCTGCAGTCTGCCTCAGCCTTGAGGAGAAGAAGTATCTGTTAAATGTGGCCAAAGCAAATGCCACCAGGATTCTGGGAGTGCAGAACTTAGAGCTGCCAGCTAGCCTGAAGGacctggaggaggaggaggaggagaggagatcTTCATCAGATAAAGAGGAAAGGGTGAGCGCTGACCGGGCATCACAGAAGACACCAGCACAGACGGGAATGATTTTACCTGATGGATTTAATGGAATGATGAACAGCACTTGTCCGGAATAGAGCTGAAATTCCTCCGCCCTTTGGacaaagagggagagagggggaAGTCACATGACTTGAATGACACCAGCTTTAAGTCTTATGTGCACAACTTCAAAGGTTAAGTAATTGTGTACGATGTCAGCGGTGGCACTGTGTCGAACAGAAACTGACCAAATGCATTTGTGTGACTCACTTCACACTTAACACTTTCGGCCACAACACTGCACATATGTGGAAAGGATTGGGGTcagtagaatttattttttattcataaaaaggacttttgaattgatcaaaagtcacagtaaagCCATTTATactgttgaaaataaatgctattctttaaACTCTCTATTCAAATAATCCTAAGAAAGGTATAatgattttcacaaaaatatgaagcaccAAACTGTTCAATACTGATgagttttgagaaatgtttttggaacaccaaattagcatatgagaatgatttctgaaggatcatgtgatactgaagtagctgctgaaagctgaaaattcagctttgcatcacaggaataaacataaaaattgtcTTTAAGTAGAAAAGGgttatttcaaattgtttttgcagcattttagatcaaataaatgcagccttattgAGTATGAGccttaaaaactataaaaaaaaaattaaatcatactGATCCCAAACTCTTGAATGATAGTGTATCATTACAGCTGTTAGAACTACAGGAAATGATTTATGTTTGCTGATAGTTAAACTGGGTTGCGTTGTCATTTACCAGAGTTTTCTTCTGTTCATCACGTGTGAAGACCAGAGAGCTCACTCTACAGTGATGGATggggtttggaaaaaatactgtcttattaattattactattattatttatttagtttatttatttttggggggCTTTGTTCATGCATCAAAAATCTTGTTGTTTTTGGTCCATTTCAGAGCCGTTTAATATGAAAGATTACTTCTgccacataattaaaaaaataaaataaatgcatgtaattctGAGATTCTTACAAA

Function

NR:

description
arginine/serine-rich protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255014.1 False 1482 mRNA 0.52 5 17960037 17964870
XM_043255015.1 True 2100 mRNA 0.45 5 17960959 17964870

Neighbor

gene id symbol gene type direction distance location
runx3 runx3,LOC107724626,LOC107734303,LOC107597655,LOC107561777,LOC107667963 coding downstream 106664 17800984 ~ 17853373 (-)
chp1 chp1,LOC107724623,LOC107734301 coding downstream 171906 17776719 ~ 17788131 (-)
khdrbs1a khdrbs1a,LOC107597656,LOC107679143,LOC107724614,LOC107561769,LOC107734287 coding downstream 186186 17769381 ~ 17773851 (-)
LOC122356377 NA coding downstream 194777 17752801 ~ 17765260 (-)
glo1 glo1,LOC107667967,LOC107734292,LOC107679178,LOC108426138,LOC103022823,LOC104919745 coding downstream 223077 17733938 ~ 17736960 (-)
rhd rhd,LOC107597651,LOC107679155,LOC107724598 coding upstream 8006 17972876 ~ 17980109 (-)
fndc5a fndc5,fndc5a,LOC107734275,LOC107575402,LOC107655678 coding upstream 108861 18073731 ~ 18080606 (-)
LOC122356930 NA coding upstream 408998 18373868 ~ 18380023 (-)
ftr69 LOC107597643,LOC107679211 coding upstream 415165 18380035 ~ 18383710 (-)
fgfr2 fgfr2,LOC107724577 coding upstream 493328 18458198 ~ 18504277 (-)
LOC122356279 NA non-coding downstream 49321 17903197 ~ 17910716 (-)
LOC122356989 NA non-coding downstream 59922 17892037 ~ 17900115 (-)
G94619 NA non-coding downstream 168147 17790884 ~ 17791890 (-)
G94608 NA non-coding downstream 237737 17721728 ~ 17722300 (-)
LOC122356952 NA non-coding downstream 287514 17632249 ~ 17672523 (-)
G94672 NA non-coding upstream 5343 17970213 ~ 17970976 (-)
G94709 NA non-coding upstream 142560 18107430 ~ 18107801 (-)
G94711 NA non-coding upstream 142968 18107838 ~ 18108189 (-)
G94713 olig4,LOC107597691,LOC107679159,LOC107735633,LOC107734277,LOC107585473,LOC107655687 non-coding upstream 146820 18111690 ~ 18113621 (-)
G94723 NA non-coding upstream 154933 18119803 ~ 18120616 (-)
LOC122356193 slc35f4,slc35f3,LOC107664436,LOC107586844,LOC107559881,LOC107668528,LOC107747268,LOC107665565,LOC107664233,LOC107736862 other downstream 573031 17374750 ~ 17387006 (-)
G94412 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290,LOC107719228,LOC107676370 other downstream 1533502 16425697 ~ 16426535 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other downstream 1667658 16290154 ~ 16292379 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other downstream 1790833 16009687 ~ 16169204 (-)
G94216 NA other downstream 2074815 15877527 ~ 15885222 (-)
LOC122356088 ate1,LOC107679187,LOC107655512 other upstream 580701 18545571 ~ 18672893 (-)
LOC122357020 LOC107724613,LOC107679163,LOC107733343,LOC107585413,LOC107597639 other upstream 992833 18957703 ~ 18975524 (-)
itga9 itga9,LOC107688464,LOC107679186,LOC107585444 other upstream 1321160 19286030 ~ 19362041 (-)
disc1 LOC107666898,LOC107730373 other upstream 1897660 19862530 ~ 19907062 (-)
LOC122357123 tsnax,LOC107557734,LOC107690806,LOC107564242,LOC107667162 other upstream 1944325 19909195 ~ 19921669 (-)

Expression


Co-expression Network